Rh2DG571600
ERF Family

Belongs to the small GTPase superfamily. Arf family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Reverse (-)
80186335 .. 80187284
950 bp
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UTR
Exon/CDS
Intron
Rh2DG571600.1

Sequence Viewer

Length: 333 bp
ATGCTTGGACTAGATGCGGCTGGTAAAACAACCATCCTTTACAAACTGCATATTGGAGAAGTCTTGTCAACTGTTCCTACAATAGGTTTTAATGTGGAAAAAGTTCAGTACAAGAATGTGATGTTCACAGTTTGGGATGTTGGTGGGCAAGAGAAACTAAGGCCGCTCTGGAGGCATTACTTTAATAATACGGATGGACTGCCTGCTGGAGGTCAGAGTAAAATCTTGGTCTGTGAACATGTTCTCAAGACTTCCAAGAAAATTCATTACCAGAAGTTTGCAGGACTGACAGGCAATGAAATAGTTGTGTTTATGACAAACATTCTGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

110

Amino Acids

12.32

Weight (kDa)

9.3

Isoelectric Point (pI)

41.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 1 - 67 2.7e-32 ADP-ribosylation factor family
Roc PF08477 1 - 66 6.7e-08 Ras of Complex, Roc, domain of DAPkinase
DUF4057 PF13266 67 - 101 4.7e-07 Protein of unknown function (DUF4057)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0030332)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0246171
rosa_samantha Rh2DG571600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 166
AciI CCGC 2 cut(s) 17, 164
AcsI RAATTY 1 cut(s) 261
AfaI GTAC 1 cut(s) 110
AfiI CCNNNNNNNGG 2 cut(s) 83, 209
AflIII ACRYGT 1 cut(s) 238
AoxI GGCC 1 cut(s) 161
ApoI RAATTY 1 cut(s) 261
Asp700I GAANNNNTTC 2 cut(s) 102, 240
BccI CCATC 2 cut(s) 41, 188
BfaI CTAG 1 cut(s) 11
BisI GCNGC 2 cut(s) 18, 164
BlsI GCNGC 2 cut(s) 19, 165
BmsI GCATC 1 cut(s) 4
BpmI CTGGAG 2 cut(s) 190, 228
BpuEI CTTGAG 1 cut(s) 230
Bsc4I CCNNNNNNNGG 2 cut(s) 83, 209
Bse3DI GCAATG 1 cut(s) 301
BseGI GGATG 3 cut(s) 33, 142, 199
BseLI CCNNNNNNNGG 2 cut(s) 83, 209
BseMI GCAATG 1 cut(s) 301
BshFI GGCC 1 cut(s) 163
BslI CCNNNNNNNGG 2 cut(s) 83, 209
BsnI GGCC 1 cut(s) 163
BspACI CCGC 2 cut(s) 17, 164
BspANI GGCC 1 cut(s) 163
BsrBI CCGCTC 1 cut(s) 166
BsrDI GCAATG 1 cut(s) 301
Bst4CI ACNGT 2 cut(s) 73, 130
BstC8I GCNNGC 1 cut(s) 204
BstDEI CTNAG 1 cut(s) 158
BstENI CCTNNNNNAGG 2 cut(s) 81, 207
BstF5I GGATG 3 cut(s) 33, 142, 199
BstMWI GCNNNNNNNGC 1 cut(s) 172
BstNSI RCATGY 1 cut(s) 242
BsuRI GGCC 1 cut(s) 163
BtsCI GGATG 3 cut(s) 33, 142, 199
Cac8I GCNNGC 1 cut(s) 204
Csp6I GTAC 1 cut(s) 109
CviAII CATG 1 cut(s) 239
CviJI RGCY 2 cut(s) 20, 163
CviKI_1 RGCY 2 cut(s) 20, 163
CviQI GTAC 1 cut(s) 109
DdeI CTNAG 1 cut(s) 158
EcoNI CCTNNNNNAGG 2 cut(s) 81, 207
FaeI CATG 1 cut(s) 242
FaiI YATR 3 cut(s) 51, 240, 314
FatI CATG 1 cut(s) 238
Fnu4HI GCNGC 2 cut(s) 18, 164
FokI GGATG 3 cut(s) 20, 149, 206
Fsp4HI GCNGC 2 cut(s) 18, 164
FspBI CTAG 1 cut(s) 11
GluI GCNGC 2 cut(s) 18, 164
GsuI CTGGAG 2 cut(s) 190, 228
HaeIII GGCC 1 cut(s) 163
Hin1II CATG 1 cut(s) 242
HincII GTYRAC 1 cut(s) 69
HindII GTYRAC 1 cut(s) 69
Hpy166II GTNNAC 3 cut(s) 69, 126, 236
Hpy188I TCNGA 1 cut(s) 216
Hpy188III TCNNGA 2 cut(s) 169, 247
Hpy8I GTNNAC 3 cut(s) 69, 126, 236
HpyCH4III ACNGT 2 cut(s) 73, 130
HpyCH4V TGCA 2 cut(s) 49, 281
HpyF10VI GCNNNNNNNGC 1 cut(s) 172
HpyF3I CTNAG 1 cut(s) 158
Hsp92II CATG 1 cut(s) 242
LpnPI CCDG 8 cut(s) 6, 154, 192, 216, 267, 276, 284, 311
LweI GCATC 1 cut(s) 4
MaeI CTAG 1 cut(s) 11
MbiI CCGCTC 1 cut(s) 166
MluCI AATT 1 cut(s) 261
MnlI CCTC 2 cut(s) 165, 203
MroXI GAANNNNTTC 2 cut(s) 102, 240
MseI TTAA 3 cut(s) 90, 183, 331
MwoI GCNNNNNNNGC 1 cut(s) 172
NlaIII CATG 1 cut(s) 242
NspI RCATGY 1 cut(s) 242
PciI ACATGT 1 cut(s) 238
PdmI GAANNNNTTC 2 cut(s) 102, 240
PkrI GCNGC 2 cut(s) 19, 165
PscI ACATGT 1 cut(s) 238
RsaI GTAC 1 cut(s) 110
RsaNI GTAC 1 cut(s) 109
SaqAI TTAA 3 cut(s) 90, 183, 331
SatI GCNGC 2 cut(s) 18, 164
SetI ASST 2 cut(s) 88, 214
SfaNI GCATC 1 cut(s) 4
SmlI CTYRAG 1 cut(s) 245
SmoI CTYRAG 1 cut(s) 245
Sse9I AATT 1 cut(s) 261
SsiI CCGC 2 cut(s) 17, 164
SspMI CTAG 1 cut(s) 11
TaaI ACNGT 2 cut(s) 73, 130
TasI AATT 1 cut(s) 261
TatI WGTACW 1 cut(s) 108
TauI GCSGC 2 cut(s) 20, 166
Tru1I TTAA 3 cut(s) 90, 183, 331
Tru9I TTAA 3 cut(s) 90, 183, 331
TspDTI ATGAA 2 cut(s) 254, 312
TspGWI ACGGA 1 cut(s) 206
XagI CCTNNNNNAGG 2 cut(s) 81, 207
XapI RAATTY 1 cut(s) 261
XceI RCATGY 1 cut(s) 242
XmnI GAANNNNTTC 2 cut(s) 102, 240
XspI CTAG 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.