RchiOBHm_Chr6g0248661

calmodulin-binding transcription activator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0030355
Physical Location & Seq
Forward (+)
4600972 .. 4603215
2244 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22288

Sequence Viewer

Length: 240 bp
ATGATTGCTCTTCCTTTTTTTGCTTACATTAAGAGTTACTTTGTCAGAGATTCCTTTGTTCTCAAATTAAAGTTACTGACTAAAAATTGTACATCCTTTCAGGTTGGAAATGTTAATGTGTTGCGCTGCAGCTACTATGACCATGGAGGAGAAAATAGAAATTTCCAGAGACGCATTTATTCAATGCTTGAAGAGGACTACAAGAAATCAAATTTTCAACCACAACTTGAGACAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00564 ko01100 map00564 map01100
Pfam Domains
Protein Families
Ank_2 CG-1 IQ TIG

Protein Analysis

79

Amino Acids

9.44

Weight (kDa)

9.39

Isoelectric Point (pI)

35.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CG-1 PF03859 31 - 66 1e-06 CG-1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0030355)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0248661
rosa_samantha Rh6BG045300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 160, 211
AfaI GTAC 1 cut(s) 91
AgsI TTSAA 3 cut(s) 183, 191, 218
AluBI AGCT 1 cut(s) 132
AluI AGCT 1 cut(s) 132
Alw26I GTCTC 2 cut(s) 163, 224
ApeKI GCWGC 2 cut(s) 126, 129
ApoI RAATTY 2 cut(s) 160, 211
AspLEI GCGC 1 cut(s) 126
BbvI GCAGC 2 cut(s) 113, 141
BcoDI GTCTC 2 cut(s) 163, 224
BfmI CTRYAG 1 cut(s) 127
BisI GCNGC 2 cut(s) 127, 130
BlsI GCNGC 2 cut(s) 128, 131
BsaJI CCNNGG 1 cut(s) 142
BseDI CCNNGG 1 cut(s) 142
BseGI GGATG 1 cut(s) 92
BseRI GAGGAG 1 cut(s) 162
BseXI GCAGC 2 cut(s) 113, 141
BsmAI GTCTC 2 cut(s) 163, 224
BsmBI CGTCTC 1 cut(s) 163
Bsp1407I TGTACA 1 cut(s) 89
Bsp19I CCATGG 1 cut(s) 142
BspMAI CTGCAG 1 cut(s) 131
BspQI GCTCTTC 1 cut(s) 15
BsrGI TGTACA 1 cut(s) 89
BssECI CCNNGG 1 cut(s) 142
BssT1I CCWWGG 1 cut(s) 142
Bst6I CTCTTC 2 cut(s) 15, 186
BstAUI TGTACA 1 cut(s) 89
BstDSI CCRYGG 1 cut(s) 142
BstF5I GGATG 1 cut(s) 92
BstHHI GCGC 1 cut(s) 126
BstMAI GTCTC 2 cut(s) 163, 224
BstSFI CTRYAG 1 cut(s) 127
BstV1I GCAGC 2 cut(s) 113, 141
BtgI CCRYGG 1 cut(s) 142
BtsCI GGATG 1 cut(s) 92
CfoI GCGC 1 cut(s) 126
CseI GACGC 1 cut(s) 180
Csp6I GTAC 1 cut(s) 90
CviAII CATG 1 cut(s) 143
CviJI RGCY 1 cut(s) 132
CviKI_1 RGCY 1 cut(s) 132
CviQI GTAC 1 cut(s) 90
Eam1104I CTCTTC 2 cut(s) 15, 186
EarI CTCTTC 2 cut(s) 15, 186
Eco130I CCWWGG 1 cut(s) 142
EcoT14I CCWWGG 1 cut(s) 142
ErhI CCWWGG 1 cut(s) 142
Esp3I CGTCTC 1 cut(s) 163
FaeI CATG 1 cut(s) 146
FaiI YATR 2 cut(s) 138, 144
FalI AAGNNNNNCTT 2 cut(s) 23, 55
FatI CATG 1 cut(s) 142
Fnu4HI GCNGC 2 cut(s) 127, 130
FokI GGATG 1 cut(s) 79
Fsp4HI GCNGC 2 cut(s) 127, 130
GlaI GCGC 1 cut(s) 125
GluI GCNGC 2 cut(s) 127, 130
HgaI GACGC 1 cut(s) 180
HhaI GCGC 1 cut(s) 126
Hin1II CATG 1 cut(s) 146
Hin6I GCGC 1 cut(s) 124
HinP1I GCGC 1 cut(s) 124
HinfI GANTC 1 cut(s) 50
Hpy188I TCNGA 1 cut(s) 47
Hpy188III TCNNGA 1 cut(s) 166
HpyCH4V TGCA 1 cut(s) 129
Hsp92II CATG 1 cut(s) 146
HspAI GCGC 1 cut(s) 124
LguI GCTCTTC 1 cut(s) 15
LpnPI CCDG 2 cut(s) 86, 179
Lsp1109I GCAGC 2 cut(s) 113, 141
MaeIII GTNAC 2 cut(s) 35, 72
MboII GAAGA 1 cut(s) 203
MluCI AATT 4 cut(s) 65, 85, 160, 211
MmeI TCCRAC 1 cut(s) 85
MnlI CCTC 2 cut(s) 140, 187
MseI TTAA 3 cut(s) 30, 68, 114
NcoI CCATGG 1 cut(s) 142
NlaIII CATG 1 cut(s) 146
PciSI GCTCTTC 1 cut(s) 15
PfeI GAWTC 1 cut(s) 50
PkrI GCNGC 2 cut(s) 128, 131
PstI CTGCAG 1 cut(s) 131
RsaI GTAC 1 cut(s) 91
RsaNI GTAC 1 cut(s) 90
SapI GCTCTTC 1 cut(s) 15
SaqAI TTAA 3 cut(s) 30, 68, 114
SatI GCNGC 2 cut(s) 127, 130
SetI ASST 2 cut(s) 105, 134
SfcI CTRYAG 1 cut(s) 127
SgeI CNNG 5 cut(s) 113, 155, 178, 200, 214
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
Sse9I AATT 4 cut(s) 65, 85, 160, 211
StyI CCWWGG 1 cut(s) 142
TasI AATT 4 cut(s) 65, 85, 160, 211
TatI WGTACW 1 cut(s) 89
TfiI GAWTC 1 cut(s) 50
Tru1I TTAA 3 cut(s) 30, 68, 114
Tru9I TTAA 3 cut(s) 30, 68, 114
TseI GCWGC 2 cut(s) 126, 129
XapI RAATTY 2 cut(s) 160, 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.