Rh6BG045300

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Forward (+)
7216591 .. 7216784
194 bp
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UTR
Exon/CDS
Intron
Rh6BG045300.1

Sequence Viewer

Length: 194 bp
ATGATTGTTCTTCCTTTTTTTGCTTACATTAAGAGTTACGTTGTCAGAGATTCCTTTGTTCTAAAATTAAAGTTACTGATTAAAAATTGTACATCCTTTCAGGTTGCAAATGTTAATGTGTTACTCTGCAGCTACTATGACCATGGAGAAGAAAGTAGAAATTTCCAGAGACACAGTAATTCAATGCTTGAAGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

64

Amino Acids

7.52

Weight (kDa)

8.69

Isoelectric Point (pI)

29.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0030355)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0248661
rosa_samantha Rh6BG045300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 160
AfaI GTAC 1 cut(s) 91
AgsI TTSAA 2 cut(s) 183, 191
AluBI AGCT 1 cut(s) 132
AluI AGCT 1 cut(s) 132
Alw26I GTCTC 1 cut(s) 163
ApeKI GCWGC 1 cut(s) 129
ApoI RAATTY 1 cut(s) 160
BbvI GCAGC 1 cut(s) 141
BcoDI GTCTC 1 cut(s) 163
BfmI CTRYAG 1 cut(s) 127
BisI GCNGC 1 cut(s) 130
BlsI GCNGC 1 cut(s) 131
BsaJI CCNNGG 1 cut(s) 142
BseDI CCNNGG 1 cut(s) 142
BseGI GGATG 1 cut(s) 92
BseXI GCAGC 1 cut(s) 141
BsmAI GTCTC 1 cut(s) 163
Bsp1407I TGTACA 1 cut(s) 89
Bsp19I CCATGG 1 cut(s) 142
BspMAI CTGCAG 1 cut(s) 131
BsrGI TGTACA 1 cut(s) 89
BssECI CCNNGG 1 cut(s) 142
BssT1I CCWWGG 1 cut(s) 142
Bst4CI ACNGT 1 cut(s) 176
BstAUI TGTACA 1 cut(s) 89
BstDSI CCRYGG 1 cut(s) 142
BstF5I GGATG 1 cut(s) 92
BstMAI GTCTC 1 cut(s) 163
BstSFI CTRYAG 1 cut(s) 127
BstV1I GCAGC 1 cut(s) 141
BtgI CCRYGG 1 cut(s) 142
BtsCI GGATG 1 cut(s) 92
Csp6I GTAC 1 cut(s) 90
CviAII CATG 1 cut(s) 143
CviJI RGCY 1 cut(s) 132
CviKI_1 RGCY 1 cut(s) 132
CviQI GTAC 1 cut(s) 90
Eco130I CCWWGG 1 cut(s) 142
EcoT14I CCWWGG 1 cut(s) 142
ErhI CCWWGG 1 cut(s) 142
FaeI CATG 1 cut(s) 146
FaiI YATR 2 cut(s) 138, 144
FatI CATG 1 cut(s) 142
Fnu4HI GCNGC 1 cut(s) 130
FokI GGATG 1 cut(s) 79
Fsp4HI GCNGC 1 cut(s) 130
FspEI CC 7 cut(s) 27, 67, 86, 109, 129, 155, 179
GluI GCNGC 1 cut(s) 130
Hin1II CATG 1 cut(s) 146
HinfI GANTC 1 cut(s) 50
Hpy188I TCNGA 1 cut(s) 47
Hpy188III TCNNGA 1 cut(s) 166
HpyCH4III ACNGT 1 cut(s) 176
HpyCH4IV ACGT 1 cut(s) 39
HpyCH4V TGCA 2 cut(s) 107, 129
HpySE526I ACGT 1 cut(s) 39
Hsp92II CATG 1 cut(s) 146
LpnPI CCDG 2 cut(s) 86, 179
Lsp1109I GCAGC 1 cut(s) 141
MaeII ACGT 1 cut(s) 39
MaeIII GTNAC 3 cut(s) 35, 72, 120
MboII GAAGA 1 cut(s) 161
MluCI AATT 4 cut(s) 65, 85, 160, 178
MseI TTAA 4 cut(s) 30, 68, 81, 114
NcoI CCATGG 1 cut(s) 142
NlaIII CATG 1 cut(s) 146
PfeI GAWTC 1 cut(s) 50
PkrI GCNGC 1 cut(s) 131
PstI CTGCAG 1 cut(s) 131
RsaI GTAC 1 cut(s) 91
RsaNI GTAC 1 cut(s) 90
SaqAI TTAA 4 cut(s) 30, 68, 81, 114
SatI GCNGC 1 cut(s) 130
SetI ASST 3 cut(s) 42, 105, 134
SfcI CTRYAG 1 cut(s) 127
SgeI CNNG 3 cut(s) 113, 155, 178
Sse9I AATT 4 cut(s) 65, 85, 160, 178
StyI CCWWGG 1 cut(s) 142
TaaI ACNGT 1 cut(s) 176
TaiI ACGT 1 cut(s) 42
TasI AATT 4 cut(s) 65, 85, 160, 178
TatI WGTACW 1 cut(s) 89
TfiI GAWTC 1 cut(s) 50
Tru1I TTAA 4 cut(s) 30, 68, 81, 114
Tru9I TTAA 4 cut(s) 30, 68, 81, 114
TseI GCWGC 1 cut(s) 129
XapI RAATTY 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.