Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0022799

Physical Location & Seq

Genomic Coordinates Reverse (-)

7229134 .. 7231455

Gene Structure 2322 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22591

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1449 bp

ATGGTAGCCGAACTAAGCAAAGGGGATGGTATGTCTACCTTTGAGTTCATAGGTAGCGGTGTTGTTGCAGCTTTGCTGAACTATTTTTCTTGTGGCTACTTCTCGAAGGAGAGAATTTCAGAAGCTAATTTGCCTAAGCTTCGTCAACAAGCCCTCAAGTGGTTTAAGTCATTTGTTGCTGTTGCTCTTCCTTTGAATATTGATGAAGGAAGAGTAGCCCCAATGACTATCATAGTTCAGAAGCTACAAGGTGCTTTGTCCTCTTTAGAGCGGTTCCCTGTTTTGCTGTGTCATTCATCTAGGTCATGTACTGGAAGTGCATGCCTCTCCTCTGGACTTAGTGCATTATCCCAGCCCTTTAAGTTGCGTCTATGTCGAGCACAAGGAGAAAAGGCTCTCCGAGATTATTCATCGAATGCTGTACTGATTGACCCATTAGCAAGCTTAGTTGCTGTTGAAGAGTTTCTTTGGCCTCGAATTCAGCGAAGTGATTCTGGTCAGAAGGCTGCTGCATCTGCTGGAAATTCTGAATCTGGAAATACTCCTACAGGAGCTGGTGCTTCATCTCTGTCTACTTCAAATCCTGCTTCTACCAATCGTCGCCATTCAACTCGTTCCAGAACATCTGTAAATATAGGTGATGCTGCTAAGAGGGAACCTTCACAAGAGAAGAGCACGAGCTCATCTAAAGGGAAGGGTAAAGCGGTTTTGAAACCTTCTCAGGAGGAAGCAAGAGACCCTCAAACAAGGAATGCAGCTCGCAGAAGAGCAGCTCTTGATAAAGATGTTCAAATGAAACCTGTGAATGGGGACACTACTTCTGAGGTGAATTGGATGTCAGATAATTGGTCAATTTATGTTGATGAGGAATTGGATGTATCTCCTGCTGAGATTGATGACGCATTGGTTATTGAAGATGATGATATCTCAGACGAAGAAGATGATGACCAGGATGATGTTCTCAGAGATGACTCTCTTCCTGTTTGCACGCCAGACAAAGTACATGATGTGAAATTGGGAGACGCTGCTGAGGATACTACTTTAGCTTCAGCAACAAGTGACAGCCAGACTAACCCTGCTTCTGGATCTAGTAGCATAGCTACTGCAGTTAGAGGATCAGATTCTGTTGACCACAGGAGTAGTAATTCTTATGGTTCTAAAGGTGCAATGTCGTTTGCTGCTGCAGCAATGGCTGGGCTTGGGTCAGGTAGCCACGGTATCAGGGGAGGTAGAGACCGACAAGGACGCCCTCTTTTTGGTGGTTCGAGTGATCATCCCAAGTTGACCTTTACATCTGGGGGGAAGCAGCTGAATCGGCATTTGACCATCTATCAGGACATTCAGAGACAGCTTGTGTTGGATGAGGATGATGATGAGAGATATGCTGGCAGTGATCTAATGCAAGTGATGGTAGCAGGCTGTGAAGTGATGATCTGCTACTTAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006464 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0016020 GO:0016043 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022402 GO:0030154 GO:0032446 GO:0032502 GO:0032989 GO:0034641 GO:0034645 GO:0036211 GO:0042023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044786 GO:0046483 GO:0048468 GO:0048856 GO:0048869 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0090558 GO:0090626 GO:0140096 GO:1901360 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

HECT

Protein Analysis

482

Amino Acids

51.56

Weight (kDa)

5.11

Isoelectric Point (pI)

49.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022799)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0251991
rosa_samantha	Rh6AG017200 Rh6AG017900 Rh6AG018800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	271
AccI	GTMKAC	2 cut(s)	35, 572
AciI	CCGC	3 cut(s)	57, 271, 704
AclWI	GGATC	2 cut(s)	1093, 1123
AcsI	RAATTY	3 cut(s)	114, 477, 523
AcuI	CTGAAG	1 cut(s)	1032
AcyI	GRCGYC	1 cut(s)	1246
AfaI	GTAC	3 cut(s)	310, 423, 1002
AfiI	CCNNNNNNNGG	4 cut(s)	159, 806, 1082, 1256
AgsI	TTSAA	7 cut(s)	196, 458, 579, 609, 712, 791, 914
AjnI	CCWGG	1 cut(s)	948
Alw21I	GWGCWC	3 cut(s)	382, 677, 683
Alw26I	GTCTC	4 cut(s)	729, 1014, 1227, 1339
AlwI	GGATC	2 cut(s)	1093, 1123
AlwNI	CAGNNNCTG	2 cut(s)	554, 1124
AoxI	GGCC	1 cut(s)	470
ApoI	RAATTY	3 cut(s)	114, 477, 523
Asp700I	GAANNNNTTC	2 cut(s)	462, 490
AsuHPI	GGTGA	2 cut(s)	650, 838
BanII	GRGCYC	1 cut(s)	683
BauI	CACGAG	1 cut(s)	676
Bbv12I	GWGCWC	3 cut(s)	382, 677, 683
BbvCI	CCTCAGC	1 cut(s)	1029
BccI	CCATC	3 cut(s)	20, 1334, 1402
BcgI	CGANNNNNNTGC	2 cut(s)	1295, 1329
BciT130I	CCWGG	1 cut(s)	950
BciVI	GTATCC	1 cut(s)	1027
BclI	TGATCA	1 cut(s)	1270
BcoDI	GTCTC	4 cut(s)	729, 1014, 1227, 1339
BfaI	CTAG	2 cut(s)	300, 1089
BfmI	CTRYAG	3 cut(s)	546, 1104, 1182
BfuI	GTATCC	1 cut(s)	1027
Bme1390I	CCNGG	1 cut(s)	950
BmiI	GGNNCC	2 cut(s)	275, 657
BmrFI	CCNGG	1 cut(s)	950
BmsI	GCATC	2 cut(s)	521, 631
Bpu10I	CCTNAGC	2 cut(s)	135, 1029
BpuEI	CTTGAG	1 cut(s)	140
BsaHI	GRCGYC	1 cut(s)	1246
BsaI	GGTCTC	2 cut(s)	729, 1227
BsaJI	CCNNGG	1 cut(s)	1213
Bsc4I	CCNNNNNNNGG	4 cut(s)	159, 806, 1082, 1256
Bse1I	ACTGG	1 cut(s)	316
Bse3DI	GCAATG	2 cut(s)	1173, 1194
BseBI	CCWGG	1 cut(s)	950
BseDI	CCNNGG	1 cut(s)	1213
BseGI	GGATG	7 cut(s)	31, 840, 880, 958, 1273, 1366, 1372
BseLI	CCNNNNNNNGG	4 cut(s)	159, 806, 1082, 1256
BseMI	GCAATG	2 cut(s)	1173, 1194
BseMII	CTCAG	6 cut(s)	734, 813, 879, 942, 976, 1020
BseNI	ACTGG	1 cut(s)	316
BseRI	GAGGAG	1 cut(s)	319
BseYI	CCCAGC	2 cut(s)	351, 1193
BshFI	GGCC	1 cut(s)	472
BsiHKAI	GWGCWC	3 cut(s)	382, 677, 683
BslFI	GGGAC	1 cut(s)	824
BslI	CCNNNNNNNGG	4 cut(s)	159, 806, 1082, 1256
BsmAI	GTCTC	4 cut(s)	729, 1014, 1227, 1339
BsmBI	CGTCTC	1 cut(s)	1014
BsmFI	GGGAC	1 cut(s)	824
BsmI	GAATGC	2 cut(s)	421, 757
BsnI	GGCC	1 cut(s)	472
Bso31I	GGTCTC	2 cut(s)	729, 1227
Bsp1286I	GDGCHC	3 cut(s)	382, 677, 683
Bsp143I	GATC	5 cut(s)	1085, 1115, 1270, 1393, 1431
BspACI	CCGC	3 cut(s)	57, 271, 704
BspANI	GGCC	1 cut(s)	472
BspCNI	CTCAG	6 cut(s)	733, 814, 880, 941, 975, 1021
BspLI	GGNNCC	2 cut(s)	275, 657
BspMAI	CTGCAG	2 cut(s)	1108, 1186
BspPI	GGATC	2 cut(s)	1093, 1123
BspQI	GCTCTTC	3 cut(s)	192, 665, 760
BspTNI	GGTCTC	2 cut(s)	729, 1227
BsrBI	CCGCTC	1 cut(s)	271
BsrDI	GCAATG	2 cut(s)	1173, 1194
BsrI	ACTGG	1 cut(s)	316
BssECI	CCNNGG	1 cut(s)	1213
BssMI	GATC	5 cut(s)	1085, 1115, 1270, 1393, 1431
BssNI	GRCGYC	1 cut(s)	1246
BssSI	CACGAG	1 cut(s)	676
Bst2BI	CACGAG	1 cut(s)	676
Bst2UI	CCWGG	1 cut(s)	950
Bst4CI	ACNGT	1 cut(s)	1217
Bst6I	CTCTTC	6 cut(s)	192, 205, 453, 665, 760, 981
BstACI	GRCGYC	1 cut(s)	1246
BstC8I	GCNNGC	6 cut(s)	322, 442, 760, 989, 1387, 1417
BstDSI	CCRYGG	1 cut(s)	1213
BstF5I	GGATG	7 cut(s)	31, 840, 880, 958, 1273, 1366, 1372
BstKTI	GATC	5 cut(s)	1088, 1118, 1273, 1396, 1434
BstMAI	GTCTC	4 cut(s)	729, 1014, 1227, 1339
BstMBI	GATC	5 cut(s)	1085, 1115, 1270, 1393, 1431
BstMWI	GCNNNNNNNGC	4 cut(s)	515, 1184, 1190, 1315
BstNI	CCWGG	1 cut(s)	950
BstNSI	RCATGY	1 cut(s)	324
BstSCI	CCNGG	1 cut(s)	948
BstSFI	CTRYAG	3 cut(s)	546, 1104, 1182
BstX2I	RGATCY	1 cut(s)	1085
BstYI	RGATCY	1 cut(s)	1085
BsuI	GTATCC	1 cut(s)	1027
BsuRI	GGCC	1 cut(s)	472
BtgI	CCRYGG	1 cut(s)	1213
BtsCI	GGATG	7 cut(s)	31, 840, 880, 958, 1273, 1366, 1372
BtsI	GCAGTG	1 cut(s)	1396
BtsIMutI	CAGTG	1 cut(s)	1396
Cac8I	GCNNGC	6 cut(s)	322, 442, 760, 989, 1387, 1417
CaiI	CAGNNNCTG	2 cut(s)	554, 1124
CseI	GACGC	4 cut(s)	356, 908, 1031, 1254
Csp6I	GTAC	3 cut(s)	309, 422, 1001
CviAII	CATG	3 cut(s)	306, 321, 1004
CviQI	GTAC	3 cut(s)	309, 422, 1001
DpnI	GATC	5 cut(s)	1087, 1117, 1272, 1395, 1433
DpnII	GATC	5 cut(s)	1085, 1115, 1270, 1393, 1431
Eam1104I	CTCTTC	6 cut(s)	192, 205, 453, 665, 760, 981
EarI	CTCTTC	6 cut(s)	192, 205, 453, 665, 760, 981
Ecl136II	GAGCTC	1 cut(s)	681
Eco24I	GRGCYC	1 cut(s)	683
Eco31I	GGTCTC	2 cut(s)	729, 1227
Eco32I	GATATC	1 cut(s)	925
Eco53kI	GAGCTC	1 cut(s)	681
Eco57I	CTGAAG	1 cut(s)	1032
EcoICRI	GAGCTC	1 cut(s)	681
EcoRI	GAATTC	1 cut(s)	477
EcoRII	CCWGG	1 cut(s)	948
EcoRV	GATATC	1 cut(s)	925
EcoT38I	GRGCYC	1 cut(s)	683
Esp3I	CGTCTC	1 cut(s)	1014
FaeI	CATG	3 cut(s)	309, 324, 1007
FalI	AAGNNNNNCTT	4 cut(s)	450, 482, 1271, 1303
FaqI	GGGAC	1 cut(s)	824
FatI	CATG	3 cut(s)	305, 320, 1003
FbaI	TGATCA	1 cut(s)	1270
FblI	GTMKAC	2 cut(s)	35, 572
FokI	GGATG	7 cut(s)	38, 847, 887, 965, 1260, 1373, 1379
FriOI	GRGCYC	1 cut(s)	683
FspBI	CTAG	2 cut(s)	300, 1089
GsaI	CCCAGC	2 cut(s)	355, 1197
HaeIII	GGCC	1 cut(s)	472
HgaI	GACGC	4 cut(s)	356, 908, 1031, 1254
Hin1I	GRCGYC	1 cut(s)	1246
Hin1II	CATG	3 cut(s)	309, 324, 1007
HincII	GTYRAC	3 cut(s)	146, 1129, 1284
HindII	GTYRAC	3 cut(s)	146, 1129, 1284
HindIII	AAGCTT	2 cut(s)	137, 442
HinfI	GANTC	5 cut(s)	491, 530, 971, 1121, 1312
HphI	GGTGA	2 cut(s)	650, 838
Hpy166II	GTNNAC	5 cut(s)	36, 146, 573, 1129, 1284
Hpy188III	TCNNGA	8 cut(s)	103, 333, 534, 618, 722, 776, 1083, 1334
Hpy8I	GTNNAC	5 cut(s)	36, 146, 573, 1129, 1284
Hpy99I	CGWCG	1 cut(s)	603
HpyAV	CCTTC	6 cut(s)	100, 200, 496, 669, 688, 726
HpyCH4III	ACNGT	1 cut(s)	1217
HpyF10VI	GCNNNNNNNGC	4 cut(s)	515, 1184, 1190, 1315
Hsp92I	GRCGYC	1 cut(s)	1246
Hsp92II	CATG	3 cut(s)	309, 324, 1007
Ksp22I	TGATCA	1 cut(s)	1270
Kzo9I	GATC	5 cut(s)	1085, 1115, 1270, 1393, 1431
LguI	GCTCTTC	3 cut(s)	192, 665, 760
LmnI	GCTCC	1 cut(s)	551
LweI	GCATC	2 cut(s)	521, 631
MaeI	CTAG	2 cut(s)	300, 1089
MaeIII	GTNAC	1 cut(s)	1058
MalI	GATC	5 cut(s)	1087, 1117, 1272, 1395, 1433
MbiI	CCGCTC	1 cut(s)	271
MboI	GATC	5 cut(s)	1085, 1115, 1270, 1393, 1431
MboII	GAAGA	9 cut(s)	179, 222, 470, 682, 777, 926, 947, 950, 968
MflI	RGATCY	1 cut(s)	1085
MhlI	GDGCHC	3 cut(s)	382, 677, 683
MlyI	GAGTC	1 cut(s)	965
MmeI	TCCRAC	1 cut(s)	1338
MroXI	GAANNNNTTC	2 cut(s)	462, 490
MseI	TTAA	2 cut(s)	165, 360
MspA1I	CMGCKG	1 cut(s)	1309
MspR9I	CCNGG	1 cut(s)	950
Mva1269I	GAATGC	2 cut(s)	421, 757
MvaI	CCWGG	1 cut(s)	950
MwoI	GCNNNNNNNGC	4 cut(s)	515, 1184, 1190, 1315
NdeII	GATC	5 cut(s)	1085, 1115, 1270, 1393, 1431
NlaIII	CATG	3 cut(s)	309, 324, 1007
NlaIV	GGNNCC	2 cut(s)	275, 657
NmuCI	GTSAC	1 cut(s)	1058
NspI	RCATGY	1 cut(s)	324
PaeI	GCATGC	1 cut(s)	324
PciSI	GCTCTTC	3 cut(s)	192, 665, 760
PcsI	WCGNNNNNNNCGW	1 cut(s)	481
PctI	GAATGC	2 cut(s)	421, 757
PdmI	GAANNNNTTC	2 cut(s)	462, 490
PfeI	GAWTC	4 cut(s)	491, 530, 1121, 1312
PleI	GAGTC	1 cut(s)	965
PpsI	GAGTC	1 cut(s)	965
Psp124BI	GAGCTC	1 cut(s)	683
Psp6I	CCWGG	1 cut(s)	948
PspFI	CCCAGC	2 cut(s)	351, 1193
PspGI	CCWGG	1 cut(s)	948
PspN4I	GGNNCC	2 cut(s)	275, 657
PstI	CTGCAG	2 cut(s)	1108, 1186
PstNI	CAGNNNCTG	2 cut(s)	554, 1124
PsuI	RGATCY	1 cut(s)	1085
PvuII	CAGCTG	1 cut(s)	1309
RsaI	GTAC	3 cut(s)	310, 423, 1002
RsaNI	GTAC	3 cut(s)	309, 422, 1001
SacI	GAGCTC	1 cut(s)	683
SapI	GCTCTTC	3 cut(s)	192, 665, 760
SaqAI	TTAA	2 cut(s)	165, 360
Sau3AI	GATC	5 cut(s)	1085, 1115, 1270, 1393, 1431
SchI	GAGTC	1 cut(s)	965
ScrFI	CCNGG	1 cut(s)	950
SduI	GDGCHC	3 cut(s)	382, 677, 683
SfaNI	GCATC	2 cut(s)	521, 631
SfcI	CTRYAG	3 cut(s)	546, 1104, 1182
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
SphI	GCATGC	1 cut(s)	324
SsiI	CCGC	3 cut(s)	57, 271, 704
SspI	AATATT	1 cut(s)	199
SspMI	CTAG	2 cut(s)	300, 1089
SstI	GAGCTC	1 cut(s)	683
StyD4I	CCNGG	1 cut(s)	948
TaaI	ACNGT	1 cut(s)	1217
TaqI	TCGA	5 cut(s)	104, 376, 413, 475, 1265
TaqII	GACCGA	1 cut(s)	1251
TatI	WGTACW	3 cut(s)	308, 421, 1000
TfiI	GAWTC	4 cut(s)	491, 530, 1121, 1312
Tru1I	TTAA	2 cut(s)	165, 360
Tru9I	TTAA	2 cut(s)	165, 360
TscAI	CASTG	1 cut(s)	1396
TseFI	GTSAC	1 cut(s)	1058
Tsp45I	GTSAC	1 cut(s)	1058
TspDTI	ATGAA	6 cut(s)	37, 219, 285, 399, 552, 809
TspRI	CASTG	1 cut(s)	1396
XapI	RAATTY	3 cut(s)	114, 477, 523
XceI	RCATGY	1 cut(s)	324
XmiI	GTMKAC	2 cut(s)	35, 572
XmnI	GAANNNNTTC	2 cut(s)	462, 490
XspI	CTAG	2 cut(s)	300, 1089

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.