Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0022799

Physical Location & Seq

Genomic Coordinates Reverse (-)

1845170 .. 1846401

Gene Structure 1232 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG017900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGACTATCATAGTTCAGAAGCTACAAGGTGCTTTGTCCTCTTTAGAGCGGTTCCCTGTTGTGCTGAGTCATTCATCTAGGTCATCTACTGGAAGTGCACGCCTCTCCTCTGGACTTAGTGCATTATCCCAGCCCTTTAAGTTGCGTCTATGTCGAGCACAAGGAGAGAAGGCTCTCCGAGATTGTTCATCGAATGTTGTACTGATTGACCCATTAGCAAGCTTAGCTGCTGTTGAAGAGTTTCTTTGGCCTCGAATGCAGCGAAGTGATTCTGGTCAGAAGGCTGCTGCATCTGCTGGAAATTCTGAATCTGGAAATACTCCTACAGGAGCTGGTGCTTCATCTCTGTCTACTTCAAATCCTGCTTCTACCAATCGTCGCCATTCAACTCGTTCCAGAACATCTGTAAATATAGGTGATGCTGCTAAGGGGGAACCTTCACAAGAGACGCGCACGAGCTCATCTAAAGGGAAGGGTAAAGCGGTTTTGAAACCTTCTCAGGAGGAAGCAAGAGGCCCTCAAACAAGGAATGCAGCTCGCAGAAGAGCAGCTCTTGATAAAGATGTTCAAATGAAACCTGTGAATGGGGACACTACTTCTGAGGATGAGGAATTGGATGTATCTCCTGCTGAGATCGATGACGCATTGGTTATTGAAGATGATGATATCTCAGCCGAAGAAGATGATGACCAGGATGATGTTCTCAGAGATGACTCTTCCTGTTTGCACGCCAGACGAAGTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006464 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0016020 GO:0016043 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022402 GO:0030154 GO:0032446 GO:0032502 GO:0032989 GO:0034641 GO:0034645 GO:0036211 GO:0042023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044786 GO:0046483 GO:0048468 GO:0048856 GO:0048869 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0090558 GO:0090626 GO:0140096 GO:1901360 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

HECT

Protein Analysis

248

Amino Acids

26.37

Weight (kDa)

5.38

Isoelectric Point (pI)

62.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022799)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0251991
rosa_samantha	Rh6AG017200 Rh6AG017900 Rh6AG018800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	49
AccI	GTMKAC	1 cut(s)	350
AccII	CGCG	1 cut(s)	451
AciI	CCGC	2 cut(s)	49, 482
AcsI	RAATTY	1 cut(s)	301
AfaI	GTAC	2 cut(s)	201, 742
AfiI	CCNNNNNNNGG	1 cut(s)	584
AgsI	TTSAA	6 cut(s)	236, 357, 387, 490, 569, 656
AjnI	CCWGG	1 cut(s)	690
AluBI	AGCT	7 cut(s)	22, 222, 227, 332, 459, 536, 551
AluI	AGCT	7 cut(s)	22, 222, 227, 332, 459, 536, 551
Alw21I	GWGCWC	3 cut(s)	100, 160, 461
Alw26I	GTCTC	1 cut(s)	440
Alw44I	GTGCAC	1 cut(s)	96
AlwNI	CAGNNNCTG	1 cut(s)	332
AoxI	GGCC	2 cut(s)	248, 514
ApaLI	GTGCAC	1 cut(s)	96
ApeKI	GCWGC	7 cut(s)	227, 259, 284, 287, 422, 533, 548
ApoI	RAATTY	1 cut(s)	301
Asp700I	GAANNNNTTC	2 cut(s)	240, 268
AspLEI	GCGC	1 cut(s)	453
AspS9I	GGNCC	1 cut(s)	515
AsuHPI	GGTGA	1 cut(s)	428
BaeGI	GKGCMC	1 cut(s)	100
BanII	GRGCYC	1 cut(s)	461
BauI	CACGAG	1 cut(s)	454
Bbv12I	GWGCWC	3 cut(s)	100, 160, 461
BbvI	GCAGC	7 cut(s)	214, 271, 271, 274, 409, 545, 560
BciT130I	CCWGG	1 cut(s)	692
BcoDI	GTCTC	1 cut(s)	440
BfaI	CTAG	1 cut(s)	78
BfmI	CTRYAG	1 cut(s)	324
BisI	GCNGC	7 cut(s)	228, 260, 285, 288, 423, 534, 549
BlpI	GCTNAGC	1 cut(s)	223
BlsI	GCNGC	7 cut(s)	229, 261, 286, 289, 424, 535, 550
Bme1390I	CCNGG	1 cut(s)	692
BmgT120I	GGNCC	1 cut(s)	515
BmiI	GGNNCC	2 cut(s)	53, 435
BmrFI	CCNGG	1 cut(s)	692
BmsI	GCATC	2 cut(s)	299, 409
Bpu10I	CCTNAGC	1 cut(s)	426
Bpu1102I	GCTNAGC	1 cut(s)	223
Bsa29I	ATCGAT	1 cut(s)	636
Bsc4I	CCNNNNNNNGG	1 cut(s)	584
Bse1I	ACTGG	1 cut(s)	94
BseBI	CCWGG	1 cut(s)	692
BseCI	ATCGAT	1 cut(s)	636
BseGI	GGATG	3 cut(s)	610, 622, 700
BseLI	CCNNNNNNNGG	1 cut(s)	584
BseMII	CTCAG	6 cut(s)	56, 512, 591, 621, 684, 718
BseNI	ACTGG	1 cut(s)	94
BseRI	GAGGAG	1 cut(s)	97
BseSI	GKGCMC	1 cut(s)	100
BseXI	GCAGC	7 cut(s)	214, 271, 271, 274, 409, 545, 560
BseYI	CCCAGC	1 cut(s)	129
Bsh1236I	CGCG	1 cut(s)	451
BshFI	GGCC	2 cut(s)	250, 516
BshVI	ATCGAT	1 cut(s)	636
BsiHKAI	GWGCWC	3 cut(s)	100, 160, 461
BslFI	GGGAC	1 cut(s)	602
BslI	CCNNNNNNNGG	1 cut(s)	584
BsmAI	GTCTC	1 cut(s)	440
BsmBI	CGTCTC	1 cut(s)	440
BsmFI	GGGAC	1 cut(s)	602
BsmI	GAATGC	2 cut(s)	261, 535
BsnI	GGCC	2 cut(s)	250, 516
Bsp1286I	GDGCHC	3 cut(s)	100, 160, 461
Bsp143I	GATC	1 cut(s)	633
Bsp1720I	GCTNAGC	1 cut(s)	223
BspACI	CCGC	2 cut(s)	49, 482
BspANI	GGCC	2 cut(s)	250, 516
BspCNI	CTCAG	6 cut(s)	57, 511, 592, 622, 683, 717
BspDI	ATCGAT	1 cut(s)	636
BspFNI	CGCG	1 cut(s)	451
BspLI	GGNNCC	2 cut(s)	53, 435
BspQI	GCTCTTC	1 cut(s)	538
BsrBI	CCGCTC	1 cut(s)	49
BsrI	ACTGG	1 cut(s)	94
BssMI	GATC	1 cut(s)	633
BssSI	CACGAG	1 cut(s)	454
Bst2BI	CACGAG	1 cut(s)	454
Bst2UI	CCWGG	1 cut(s)	692
Bst6I	CTCTTC	3 cut(s)	231, 538, 721
BstC8I	GCNNGC	4 cut(s)	100, 220, 538, 729
BstDEI	CTNAG	9 cut(s)	65, 116, 223, 426, 498, 600, 630, 670, 704
BstF5I	GGATG	3 cut(s)	610, 622, 700
BstFNI	CGCG	1 cut(s)	451
BstHHI	GCGC	1 cut(s)	453
BstKTI	GATC	1 cut(s)	636
BstMAI	GTCTC	1 cut(s)	440
BstMBI	GATC	1 cut(s)	633
BstMWI	GCNNNNNNNGC	3 cut(s)	224, 256, 293
BstNI	CCWGG	1 cut(s)	692
BstSCI	CCNGG	1 cut(s)	690
BstSFI	CTRYAG	1 cut(s)	324
BstSLI	GKGCMC	1 cut(s)	100
BstUI	CGCG	1 cut(s)	451
BstV1I	GCAGC	7 cut(s)	214, 271, 271, 274, 409, 545, 560
Bsu15I	ATCGAT	1 cut(s)	636
BsuRI	GGCC	2 cut(s)	250, 516
BsuTUI	ATCGAT	1 cut(s)	636
BtsCI	GGATG	3 cut(s)	610, 622, 700
Cac8I	GCNNGC	4 cut(s)	100, 220, 538, 729
CaiI	CAGNNNCTG	1 cut(s)	332
CfoI	GCGC	1 cut(s)	453
Cfr13I	GGNCC	1 cut(s)	515
ClaI	ATCGAT	1 cut(s)	636
CseI	GACGC	3 cut(s)	134, 457, 650
Csp6I	GTAC	2 cut(s)	200, 741
CviAII	CATG	1 cut(s)	744
CviQI	GTAC	2 cut(s)	200, 741
DdeI	CTNAG	9 cut(s)	65, 116, 223, 426, 498, 600, 630, 670, 704
DpnI	GATC	1 cut(s)	635
DpnII	GATC	1 cut(s)	633
Eam1104I	CTCTTC	3 cut(s)	231, 538, 721
EarI	CTCTTC	3 cut(s)	231, 538, 721
Ecl136II	GAGCTC	1 cut(s)	459
Eco24I	GRGCYC	1 cut(s)	461
Eco32I	GATATC	1 cut(s)	667
Eco53kI	GAGCTC	1 cut(s)	459
EcoICRI	GAGCTC	1 cut(s)	459
EcoO109I	RGGNCCY	1 cut(s)	515
EcoRII	CCWGG	1 cut(s)	690
EcoRV	GATATC	1 cut(s)	667
EcoT38I	GRGCYC	1 cut(s)	461
Esp3I	CGTCTC	1 cut(s)	440
FaeI	CATG	1 cut(s)	747
FaiI	YATR	4 cut(s)	11, 151, 413, 745
FalI	AAGNNNNNCTT	2 cut(s)	228, 260
FaqI	GGGAC	1 cut(s)	602
FatI	CATG	1 cut(s)	743
FblI	GTMKAC	1 cut(s)	350
Fnu4HI	GCNGC	7 cut(s)	228, 260, 285, 288, 423, 534, 549
FokI	GGATG	3 cut(s)	617, 629, 707
FriOI	GRGCYC	1 cut(s)	461
Fsp4HI	GCNGC	7 cut(s)	228, 260, 285, 288, 423, 534, 549
FspBI	CTAG	1 cut(s)	78
GlaI	GCGC	1 cut(s)	452
GluI	GCNGC	7 cut(s)	228, 260, 285, 288, 423, 534, 549
GsaI	CCCAGC	1 cut(s)	133
HaeIII	GGCC	2 cut(s)	250, 516
HgaI	GACGC	3 cut(s)	134, 457, 650
HhaI	GCGC	1 cut(s)	453
Hin1II	CATG	1 cut(s)	747
Hin6I	GCGC	1 cut(s)	451
HinP1I	GCGC	1 cut(s)	451
HindIII	AAGCTT	1 cut(s)	220
HinfI	GANTC	4 cut(s)	67, 269, 308, 713
HphI	GGTGA	1 cut(s)	428
Hpy166II	GTNNAC	2 cut(s)	98, 351
Hpy188I	TCNGA	6 cut(s)	18, 179, 279, 307, 601, 707
Hpy188III	TCNNGA	5 cut(s)	111, 312, 396, 500, 554
Hpy8I	GTNNAC	2 cut(s)	98, 351
Hpy99I	CGWCG	1 cut(s)	381
HpyAV	CCTTC	5 cut(s)	163, 274, 447, 466, 504
HpyCH4V	TGCA	6 cut(s)	98, 122, 259, 290, 533, 727
HpyF10VI	GCNNNNNNNGC	3 cut(s)	224, 256, 293
HpyF3I	CTNAG	9 cut(s)	65, 116, 223, 426, 498, 600, 630, 670, 704
Hsp92II	CATG	1 cut(s)	747
HspAI	GCGC	1 cut(s)	451
Kzo9I	GATC	1 cut(s)	633
LguI	GCTCTTC	1 cut(s)	538
LmnI	GCTCC	1 cut(s)	329
Lsp1109I	GCAGC	7 cut(s)	214, 271, 271, 274, 409, 545, 560
LweI	GCATC	2 cut(s)	299, 409
MaeI	CTAG	1 cut(s)	78
MalI	GATC	1 cut(s)	635
MbiI	CCGCTC	1 cut(s)	49
MboI	GATC	1 cut(s)	633
MboII	GAAGA	6 cut(s)	248, 555, 668, 689, 692, 708
MhlI	GDGCHC	3 cut(s)	100, 160, 461
MluCI	AATT	2 cut(s)	301, 611
MlyI	GAGTC	2 cut(s)	76, 707
MnlI	CCTC	9 cut(s)	49, 113, 118, 261, 496, 506, 528, 595, 601
MroXI	GAANNNNTTC	2 cut(s)	240, 268
MseI	TTAA	1 cut(s)	138
MspR9I	CCNGG	1 cut(s)	692
Mva1269I	GAATGC	2 cut(s)	261, 535
MvaI	CCWGG	1 cut(s)	692
MvnI	CGCG	1 cut(s)	451
MwoI	GCNNNNNNNGC	3 cut(s)	224, 256, 293
NdeII	GATC	1 cut(s)	633
NlaIII	CATG	1 cut(s)	747
NlaIV	GGNNCC	2 cut(s)	53, 435
PciSI	GCTCTTC	1 cut(s)	538
PcsI	WCGNNNNNNNCGW	1 cut(s)	259
PctI	GAATGC	2 cut(s)	261, 535
PdmI	GAANNNNTTC	2 cut(s)	240, 268
PfeI	GAWTC	2 cut(s)	269, 308
PkrI	GCNGC	7 cut(s)	229, 261, 286, 289, 424, 535, 550
PleI	GAGTC	2 cut(s)	75, 707
PpsI	GAGTC	2 cut(s)	75, 707
Psp124BI	GAGCTC	1 cut(s)	461
Psp6I	CCWGG	1 cut(s)	690
PspFI	CCCAGC	1 cut(s)	129
PspGI	CCWGG	1 cut(s)	690
PspN4I	GGNNCC	2 cut(s)	53, 435
PspPI	GGNCC	1 cut(s)	515
PstNI	CAGNNNCTG	1 cut(s)	332
RsaI	GTAC	2 cut(s)	201, 742
RsaNI	GTAC	2 cut(s)	200, 741
SacI	GAGCTC	1 cut(s)	461
SapI	GCTCTTC	1 cut(s)	538
SaqAI	TTAA	1 cut(s)	138
SatI	GCNGC	7 cut(s)	228, 260, 285, 288, 423, 534, 549
Sau3AI	GATC	1 cut(s)	633
Sau96I	GGNCC	1 cut(s)	515
SchI	GAGTC	2 cut(s)	76, 707
ScrFI	CCNGG	1 cut(s)	692
SduI	GDGCHC	3 cut(s)	100, 160, 461
SfaNI	GCATC	2 cut(s)	299, 409
SfcI	CTRYAG	1 cut(s)	324
Sse9I	AATT	2 cut(s)	301, 611
SsiI	CCGC	2 cut(s)	49, 482
SspMI	CTAG	1 cut(s)	78
SstI	GAGCTC	1 cut(s)	461
StyD4I	CCNGG	1 cut(s)	690
TaqI	TCGA	4 cut(s)	154, 191, 253, 636
TasI	AATT	2 cut(s)	301, 611
TatI	WGTACW	2 cut(s)	199, 740
TfiI	GAWTC	2 cut(s)	269, 308
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TseI	GCWGC	7 cut(s)	227, 259, 284, 287, 422, 533, 548
TspDTI	ATGAA	4 cut(s)	63, 177, 330, 587
VneI	GTGCAC	1 cut(s)	96
XapI	RAATTY	1 cut(s)	301
XmiI	GTMKAC	1 cut(s)	350
XmnI	GAANNNNTTC	2 cut(s)	240, 268
XspI	CTAG	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.