RchiOBHm_Chr6g0257611

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0030363
Physical Location & Seq
Reverse (-)
12963274 .. 12965333
2060 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23105

Sequence Viewer

Length: 246 bp
ATGGCTGTTAGATTGCGAATTGAAAGATTGGCCATTGAGTATGATTCTGAGATACTTGTTTATCCGATGCAGCAGCATGTAGATGATTTTCATCCTTTGAAGTCCATCATCAACTCTTGTTTGCACCTTCAAGCTTCTTTCGTGGAGTATAGTTTGGTTCATGTCTGCATAGATATGAATAATGTTGCTGATATACTACCCAATTGTTGCTTAGATGGTGATCTGGGCGTGCATTCTATGGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

81

Amino Acids

9.18

Weight (kDa)

4.81

Isoelectric Point (pI)

51.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 2 - 68 1.3e-07 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0030363)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0257611
rosa_roxburghii Rroxscaffold_7G00208850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 30
AgsI TTSAA 3 cut(s) 23, 100, 131
AluBI AGCT 1 cut(s) 134
AluI AGCT 1 cut(s) 134
AoxI GGCC 1 cut(s) 30
ApeKI GCWGC 2 cut(s) 70, 73
AsuHPI GGTGA 1 cut(s) 230
BalI TGGCCA 1 cut(s) 32
BbvI GCAGC 2 cut(s) 82, 85
BccI CCATC 2 cut(s) 113, 209
BisI GCNGC 2 cut(s) 71, 74
BlsI GCNGC 2 cut(s) 72, 75
BmsI GCATC 1 cut(s) 57
BsaBI GATNNNNATC 2 cut(s) 90, 219
Bse8I GATNNNNATC 2 cut(s) 90, 219
BseGI GGATG 1 cut(s) 91
BseJI GATNNNNATC 2 cut(s) 90, 219
BseMII CTCAG 1 cut(s) 39
BseXI GCAGC 2 cut(s) 82, 85
BshFI GGCC 1 cut(s) 32
BsmI GAATGC 1 cut(s) 232
BsnI GGCC 1 cut(s) 32
Bsp143I GATC 1 cut(s) 220
BspANI GGCC 1 cut(s) 32
BspCNI CTCAG 1 cut(s) 40
BssMI GATC 1 cut(s) 220
BstC8I GCNNGC 1 cut(s) 230
BstDEI CTNAG 2 cut(s) 48, 211
BstF5I GGATG 1 cut(s) 91
BstKTI GATC 1 cut(s) 223
BstMBI GATC 1 cut(s) 220
BstNSI RCATGY 1 cut(s) 80
BstV1I GCAGC 2 cut(s) 82, 85
BsuRI GGCC 1 cut(s) 32
BtsCI GGATG 1 cut(s) 91
Cac8I GCNNGC 1 cut(s) 230
CviAII CATG 2 cut(s) 77, 161
CviJI RGCY 3 cut(s) 5, 32, 134
CviKI_1 RGCY 3 cut(s) 5, 32, 134
DdeI CTNAG 2 cut(s) 48, 211
DpnI GATC 1 cut(s) 222
DpnII GATC 1 cut(s) 220
EaeI YGGCCR 1 cut(s) 30
FaeI CATG 2 cut(s) 80, 164
FaiI YATR 9 cut(s) 42, 78, 150, 162, 170, 176, 194, 239, 244
FatI CATG 2 cut(s) 76, 160
Fnu4HI GCNGC 2 cut(s) 71, 74
FokI GGATG 1 cut(s) 78
Fsp4HI GCNGC 2 cut(s) 71, 74
GluI GCNGC 2 cut(s) 71, 74
HaeIII GGCC 1 cut(s) 32
Hin1II CATG 2 cut(s) 80, 164
HindIII AAGCTT 1 cut(s) 132
HinfI GANTC 1 cut(s) 44
HphI GGTGA 1 cut(s) 230
Hpy188I TCNGA 2 cut(s) 49, 66
HpyAV CCTTC 1 cut(s) 137
HpyCH4V TGCA 4 cut(s) 70, 124, 168, 232
HpyF3I CTNAG 2 cut(s) 48, 211
Hsp92II CATG 2 cut(s) 80, 164
Kzo9I GATC 1 cut(s) 220
LpnPI CCDG 1 cut(s) 209
Lsp1109I GCAGC 2 cut(s) 82, 85
LweI GCATC 1 cut(s) 57
MalI GATC 1 cut(s) 222
MboI GATC 1 cut(s) 220
MfeI CAATTG 1 cut(s) 202
MlsI TGGCCA 1 cut(s) 32
MluCI AATT 2 cut(s) 18, 202
MluNI TGGCCA 1 cut(s) 32
Mox20I TGGCCA 1 cut(s) 32
MscI TGGCCA 1 cut(s) 32
MslI CAYNNNNRTG 2 cut(s) 81, 173
Msp20I TGGCCA 1 cut(s) 32
MunI CAATTG 1 cut(s) 202
Mva1269I GAATGC 1 cut(s) 232
NdeII GATC 1 cut(s) 220
NlaIII CATG 2 cut(s) 80, 164
NspI RCATGY 1 cut(s) 80
PctI GAATGC 1 cut(s) 232
PfeI GAWTC 1 cut(s) 44
PkrI GCNGC 2 cut(s) 72, 75
RseI CAYNNNNRTG 2 cut(s) 81, 173
SatI GCNGC 2 cut(s) 71, 74
Sau3AI GATC 1 cut(s) 220
SetI ASST 2 cut(s) 129, 136
SfaNI GCATC 1 cut(s) 57
SgeI CNNG 8 cut(s) 68, 89, 129, 143, 154, 173, 236, 241
SmiMI CAYNNNNRTG 2 cut(s) 81, 173
Sse9I AATT 2 cut(s) 18, 202
TasI AATT 2 cut(s) 18, 202
TfiI GAWTC 1 cut(s) 44
TseI GCWGC 2 cut(s) 70, 73
TspDTI ATGAA 3 cut(s) 80, 149, 191
XceI RCATGY 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.