Rroxscaffold_7G00208850

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0030363
Physical Location & Seq
Reverse (-)
58984925 .. 58988504
3580 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00208850.1

Sequence Viewer

Length: 216 bp
ATGCGGCCTTTACTTGATCTCAAAATGGCTGTTAGGTTGGGAATTGAAAGATTGGCCATTGAGTATGATTCTGAGATCCTTGTTTATCTGATGCAGCAGGATGTAGATGATTTTCATCCTTTGAAGTCCATCATCAACTCTTGTTTGCACCTTCAAGCTTCTTTCCTAGAGTATAGTTTGGTTCTTGTCTGCATGGAAATGAATAATGTTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

71

Amino Acids

8.21

Weight (kDa)

4.63

Isoelectric Point (pI)

57.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 7 - 71 1.4e-08 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0030363)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0257611
rosa_roxburghii Rroxscaffold_7G00208850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 4
AclWI GGATC 1 cut(s) 70
AcoI YGGCCR 1 cut(s) 54
AgsI TTSAA 3 cut(s) 47, 124, 155
AluBI AGCT 1 cut(s) 158
AluI AGCT 1 cut(s) 158
AlwI GGATC 1 cut(s) 70
AoxI GGCC 2 cut(s) 5, 54
ApeKI GCWGC 1 cut(s) 94
BalI TGGCCA 1 cut(s) 56
BbvI GCAGC 1 cut(s) 106
BccI CCATC 1 cut(s) 137
BfaI CTAG 1 cut(s) 167
BisI GCNGC 2 cut(s) 5, 95
BlsI GCNGC 2 cut(s) 6, 96
BmsI GCATC 1 cut(s) 81
BsaBI GATNNNNATC 1 cut(s) 114
Bse8I GATNNNNATC 1 cut(s) 114
BseGI GGATG 2 cut(s) 106, 115
BseJI GATNNNNATC 1 cut(s) 114
BseMII CTCAG 1 cut(s) 63
BseXI GCAGC 1 cut(s) 106
BshFI GGCC 2 cut(s) 7, 56
BsnI GGCC 2 cut(s) 7, 56
Bsp143I GATC 2 cut(s) 16, 75
BspACI CCGC 1 cut(s) 4
BspANI GGCC 2 cut(s) 7, 56
BspCNI CTCAG 1 cut(s) 64
BspPI GGATC 1 cut(s) 70
BssMI GATC 2 cut(s) 16, 75
BstDEI CTNAG 2 cut(s) 72, 213
BstF5I GGATG 2 cut(s) 106, 115
BstKTI GATC 2 cut(s) 19, 78
BstMBI GATC 2 cut(s) 16, 75
BstV1I GCAGC 1 cut(s) 106
BstX2I RGATCY 1 cut(s) 75
BstYI RGATCY 1 cut(s) 75
BsuRI GGCC 2 cut(s) 7, 56
BtsCI GGATG 2 cut(s) 106, 115
CviAII CATG 1 cut(s) 193
CviJI RGCY 4 cut(s) 7, 29, 56, 158
CviKI_1 RGCY 4 cut(s) 7, 29, 56, 158
DdeI CTNAG 2 cut(s) 72, 213
DpnI GATC 2 cut(s) 18, 77
DpnII GATC 2 cut(s) 16, 75
EaeI YGGCCR 1 cut(s) 54
FaeI CATG 1 cut(s) 196
FaiI YATR 3 cut(s) 66, 174, 194
FatI CATG 1 cut(s) 192
Fnu4HI GCNGC 2 cut(s) 5, 95
FokI GGATG 2 cut(s) 102, 113
Fsp4HI GCNGC 2 cut(s) 5, 95
FspBI CTAG 1 cut(s) 167
GluI GCNGC 2 cut(s) 5, 95
HaeIII GGCC 2 cut(s) 7, 56
Hin1II CATG 1 cut(s) 196
HindIII AAGCTT 1 cut(s) 156
HinfI GANTC 1 cut(s) 68
Hpy188I TCNGA 2 cut(s) 73, 90
HpyAV CCTTC 1 cut(s) 161
HpyCH4V TGCA 3 cut(s) 94, 148, 192
HpyF3I CTNAG 2 cut(s) 72, 213
Hsp92II CATG 1 cut(s) 196
Kzo9I GATC 2 cut(s) 16, 75
LpnPI CCDG 1 cut(s) 83
Lsp1109I GCAGC 1 cut(s) 106
LweI GCATC 1 cut(s) 81
MaeI CTAG 1 cut(s) 167
MalI GATC 2 cut(s) 18, 77
MboI GATC 2 cut(s) 16, 75
MflI RGATCY 1 cut(s) 75
MlsI TGGCCA 1 cut(s) 56
MluCI AATT 1 cut(s) 42
MluNI TGGCCA 1 cut(s) 56
Mox20I TGGCCA 1 cut(s) 56
MscI TGGCCA 1 cut(s) 56
MslI CAYNNNNRTG 1 cut(s) 197
Msp20I TGGCCA 1 cut(s) 56
NdeII GATC 2 cut(s) 16, 75
NlaIII CATG 1 cut(s) 196
PfeI GAWTC 1 cut(s) 68
PkrI GCNGC 2 cut(s) 6, 96
PsuI RGATCY 1 cut(s) 75
RseI CAYNNNNRTG 1 cut(s) 197
SatI GCNGC 2 cut(s) 5, 95
Sau3AI GATC 2 cut(s) 16, 75
SetI ASST 3 cut(s) 38, 153, 160
SfaNI GCATC 1 cut(s) 81
SgeI CNNG 8 cut(s) 26, 92, 110, 153, 167, 179, 197, 205
SmiMI CAYNNNNRTG 1 cut(s) 197
Sse9I AATT 1 cut(s) 42
SsiI CCGC 1 cut(s) 4
SspMI CTAG 1 cut(s) 167
TasI AATT 1 cut(s) 42
TauI GCSGC 1 cut(s) 7
TfiI GAWTC 1 cut(s) 68
TseI GCWGC 1 cut(s) 94
TspDTI ATGAA 2 cut(s) 104, 215
XspI CTAG 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.