RchiOBHm_Chr6g0261131

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0022790
Physical Location & Seq
Reverse (-)
16067797 .. 16079245
11449 bp
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UTR
Exon/CDS
Intron
PRQ23419

Sequence Viewer

Length: 501 bp
ATGAGTCTAGTTTTCTTGGTCTATTGCATTCAGATTACCGAAAATTCATTCTTCTTTTCTATTGGTCTTTGTAGGAATCCGATGAAGATACTGATCCCAACAATTAACGTTGGTGCATTGAAGATCATCACCAGGAACCAACTATTCGTATGTCAAAATAGAGTATTGAAATTTAAAAGTGGAGATTTACTCAAGTCCATGAAGACGAAGCACCACCACCTTACCTGCACAAGCTTGACTTTAAAAAGGGACATCGTTGTGCTATATATAAATCATATTGCCCCCGGTGGCTTATTGCAATGGAGATTTGGGTTTATGGGAACAATTTTGAGTCGTTTCTTGCTGCTGTGGTGGTTTTGGAGGACAGGACAGCTAGCTGAACATCATTTCATCAATGACTGTGGATCATTGTGTCAAACTCGGAGGGCAAAATATGAACTTTGGGTGAGTTTGAGAGGATACATGCAAGATTGGCTGTCCCACTGTCTGTGCGGCTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

166

Amino Acids

19.39

Weight (kDa)

9.61

Isoelectric Point (pI)

29.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022790)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0261131 RchiOBHm_Chr6g0261401 RchiOBHm_Chr6g0261461 RchiOBHm_Chr6g0261661

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 233
AciI CCGC 1 cut(s) 492
AclI AACGTT 1 cut(s) 108
AclWI GGATC 2 cut(s) 88, 412
AcsI RAATTY 2 cut(s) 43, 170
AgsI TTSAA 2 cut(s) 121, 169
AjnI CCWGG 1 cut(s) 131
AluBI AGCT 3 cut(s) 234, 373, 377
AluI AGCT 3 cut(s) 234, 373, 377
AlwI GGATC 2 cut(s) 88, 412
ApeKI GCWGC 2 cut(s) 343, 495
ApoI RAATTY 2 cut(s) 43, 170
AsuC2I CCSGG 1 cut(s) 285
AsuHPI GGTGA 2 cut(s) 121, 457
AsuNHI GCTAGC 1 cut(s) 373
BbsI GAAGAC 1 cut(s) 209
BbvI GCAGC 2 cut(s) 330, 482
BciT130I CCWGG 1 cut(s) 133
BciVI GTATCC 1 cut(s) 452
BcnI CCSGG 1 cut(s) 285
BfaI CTAG 2 cut(s) 8, 374
BfuAI ACCTGC 1 cut(s) 233
BfuI GTATCC 1 cut(s) 452
BisI GCNGC 3 cut(s) 344, 493, 496
BlsI GCNGC 3 cut(s) 345, 494, 497
Bme1390I CCNGG 2 cut(s) 133, 285
BmiI GGNNCC 1 cut(s) 137
BmrFI CCNGG 2 cut(s) 133, 285
BmtI GCTAGC 1 cut(s) 377
BpiI GAAGAC 1 cut(s) 209
BplI GAGNNNNNCTC 2 cut(s) 174, 206
BpuEI CTTGAG 1 cut(s) 176
BpuMI CCSGG 1 cut(s) 285
BsaBI GATNNNNATC 1 cut(s) 92
BsaJI CCNNGG 1 cut(s) 283
Bse3DI GCAATG 1 cut(s) 305
Bse8I GATNNNNATC 1 cut(s) 92
BseBI CCWGG 1 cut(s) 133
BseDI CCNNGG 1 cut(s) 283
BseJI GATNNNNATC 1 cut(s) 92
BseMI GCAATG 1 cut(s) 305
BseXI GCAGC 2 cut(s) 330, 482
BsgI GTGCAG 1 cut(s) 211
BsiSI CCGG 1 cut(s) 285
BslFI GGGAC 2 cut(s) 263, 463
BsmFI GGGAC 2 cut(s) 263, 463
BsmI GAATGC 1 cut(s) 27
Bsp143I GATC 3 cut(s) 93, 123, 404
BspACI CCGC 1 cut(s) 492
BspLI GGNNCC 1 cut(s) 137
BspMI ACCTGC 1 cut(s) 233
BspOI GCTAGC 1 cut(s) 377
BspPI GGATC 2 cut(s) 88, 412
BsrDI GCAATG 1 cut(s) 305
BssECI CCNNGG 1 cut(s) 283
BssMI GATC 3 cut(s) 93, 123, 404
Bst2UI CCWGG 1 cut(s) 133
Bst4CI ACNGT 2 cut(s) 401, 485
BstC8I GCNNGC 1 cut(s) 375
BstKTI GATC 3 cut(s) 96, 126, 407
BstMBI GATC 3 cut(s) 93, 123, 404
BstMWI GCNNNNNNNGC 1 cut(s) 472
BstNI CCWGG 1 cut(s) 133
BstNSI RCATGY 1 cut(s) 466
BstSCI CCNGG 2 cut(s) 131, 283
BstV1I GCAGC 2 cut(s) 330, 482
BstV2I GAAGAC 1 cut(s) 209
BsuI GTATCC 1 cut(s) 452
BtsIMutI CAGTG 1 cut(s) 481
BveI ACCTGC 1 cut(s) 233
Cac8I GCNNGC 1 cut(s) 375
CspCI CAANNNNNGTGG 2 cut(s) 382, 417
CviAII CATG 2 cut(s) 199, 463
CviJI RGCY 6 cut(s) 234, 291, 373, 377, 475, 495
CviKI_1 RGCY 6 cut(s) 234, 291, 373, 377, 475, 495
DpnI GATC 3 cut(s) 95, 125, 406
DpnII GATC 3 cut(s) 93, 123, 404
DraI TTTAAA 2 cut(s) 175, 243
EcoRII CCWGG 1 cut(s) 131
FaeI CATG 2 cut(s) 202, 466
FaiI YATR 9 cut(s) 151, 200, 265, 267, 269, 276, 317, 435, 464
FalI AAGNNNNNCTT 2 cut(s) 223, 255
FaqI GGGAC 2 cut(s) 263, 463
FatI CATG 2 cut(s) 198, 462
Fnu4HI GCNGC 3 cut(s) 344, 493, 496
Fsp4HI GCNGC 3 cut(s) 344, 493, 496
FspBI CTAG 2 cut(s) 8, 374
GluI GCNGC 3 cut(s) 344, 493, 496
HapII CCGG 1 cut(s) 285
Hin1II CATG 2 cut(s) 202, 466
HindIII AAGCTT 1 cut(s) 232
HinfI GANTC 3 cut(s) 4, 76, 331
HpaII CCGG 1 cut(s) 285
HphI GGTGA 2 cut(s) 121, 457
Hpy188I TCNGA 3 cut(s) 33, 81, 423
HpyCH4III ACNGT 2 cut(s) 401, 485
HpyCH4IV ACGT 1 cut(s) 108
HpyCH4V TGCA 5 cut(s) 27, 116, 228, 298, 466
HpyF10VI GCNNNNNNNGC 1 cut(s) 472
HpySE526I ACGT 1 cut(s) 108
Hsp92II CATG 2 cut(s) 202, 466
Kzo9I GATC 3 cut(s) 93, 123, 404
LpnPI CCDG 5 cut(s) 118, 145, 238, 298, 351
Lsp1109I GCAGC 2 cut(s) 330, 482
MaeI CTAG 2 cut(s) 8, 374
MaeII ACGT 1 cut(s) 108
MalI GATC 3 cut(s) 95, 125, 406
MboI GATC 3 cut(s) 93, 123, 404
MboII GAAGA 4 cut(s) 43, 97, 133, 214
MluCI AATT 4 cut(s) 43, 102, 170, 324
MlyI GAGTC 2 cut(s) 13, 340
MnlI CCTC 3 cut(s) 354, 417, 449
MseI TTAA 3 cut(s) 105, 174, 242
MslI CAYNNNNRTG 1 cut(s) 257
MspI CCGG 1 cut(s) 285
MspR9I CCNGG 2 cut(s) 133, 285
Mva1269I GAATGC 1 cut(s) 27
MvaI CCWGG 1 cut(s) 133
MwoI GCNNNNNNNGC 1 cut(s) 472
NciI CCSGG 1 cut(s) 285
NdeII GATC 3 cut(s) 93, 123, 404
NheI GCTAGC 1 cut(s) 373
NlaIII CATG 2 cut(s) 202, 466
NlaIV GGNNCC 1 cut(s) 137
NspI RCATGY 1 cut(s) 466
PctI GAATGC 1 cut(s) 27
PfeI GAWTC 1 cut(s) 76
PkrI GCNGC 3 cut(s) 345, 494, 497
PleI GAGTC 2 cut(s) 12, 339
PpsI GAGTC 2 cut(s) 12, 339
Psp1406I AACGTT 1 cut(s) 108
Psp6I CCWGG 1 cut(s) 131
PspGI CCWGG 1 cut(s) 131
PspN4I GGNNCC 1 cut(s) 137
RseI CAYNNNNRTG 1 cut(s) 257
SaqAI TTAA 3 cut(s) 105, 174, 242
SatI GCNGC 3 cut(s) 344, 493, 496
Sau3AI GATC 3 cut(s) 93, 123, 404
SchI GAGTC 2 cut(s) 13, 340
ScrFI CCNGG 2 cut(s) 133, 285
SetI ASST 6 cut(s) 111, 222, 227, 236, 375, 379
SmiMI CAYNNNNRTG 1 cut(s) 257
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
Sse9I AATT 4 cut(s) 43, 102, 170, 324
SsiI CCGC 1 cut(s) 492
SspMI CTAG 2 cut(s) 8, 374
StyD4I CCNGG 2 cut(s) 131, 283
TaaI ACNGT 2 cut(s) 401, 485
TaiI ACGT 1 cut(s) 111
TasI AATT 4 cut(s) 43, 102, 170, 324
TauI GCSGC 1 cut(s) 495
TfiI GAWTC 1 cut(s) 76
Tru1I TTAA 3 cut(s) 105, 174, 242
Tru9I TTAA 3 cut(s) 105, 174, 242
TscAI CASTG 1 cut(s) 488
TseI GCWGC 2 cut(s) 343, 495
TspDTI ATGAA 5 cut(s) 36, 98, 215, 379, 450
TspRI CASTG 1 cut(s) 488
XapI RAATTY 2 cut(s) 43, 170
XceI RCATGY 1 cut(s) 466
XspI CTAG 2 cut(s) 8, 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.