RchiOBHm_Chr6g0261881

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0024702
Physical Location & Seq
Reverse (-)
16615365 .. 16615637
273 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23484

Sequence Viewer

Length: 228 bp
ATGGTTTGGCCAATCTTTTACAAAGTGGATCCCTCGGACGTAAGACACCAAAGAGGCACATTTAGTAAGGCACTTGCAGAGCATGAGCACCGATTCGAAGATGACAAGAACAAGGTGTTAAGATGGAGAGAAGCTCTTTCAGAAGCAGCAAATTTATCTGGGTGGCATTTCCCGGGCGGGTACATCATGCACTTAATCTTACTTATAGCAATTTGTCTGTTTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

75

Amino Acids

8.86

Weight (kDa)

6.96

Isoelectric Point (pI)

49.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 2 - 57 1.5e-13 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024702)

Species Orthologous Gene IDs
pyrus_communis pycom15g38230
rosa_chinensis RchiOBHm_Chr6g0261881
rosa_rugosa Rorug07G0158900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 177
AclWI GGATC 2 cut(s) 23, 36
AcoI YGGCCR 1 cut(s) 8
AcsI RAATTY 1 cut(s) 151
AfaI GTAC 1 cut(s) 182
AluBI AGCT 1 cut(s) 134
AluI AGCT 1 cut(s) 134
Alw21I GWGCWC 1 cut(s) 90
AlwI GGATC 2 cut(s) 23, 36
Ama87I CYCGRG 1 cut(s) 172
AoxI GGCC 1 cut(s) 8
ApeKI GCWGC 1 cut(s) 146
ApoI RAATTY 1 cut(s) 151
AsuC2I CCSGG 2 cut(s) 173, 174
AsuII TTCGAA 1 cut(s) 96
AvaI CYCGRG 1 cut(s) 172
BalI TGGCCA 1 cut(s) 10
BamHI GGATCC 1 cut(s) 28
Bbv12I GWGCWC 1 cut(s) 90
BbvI GCAGC 1 cut(s) 158
BccI CCATC 1 cut(s) 117
BcnI CCSGG 2 cut(s) 173, 174
BisI GCNGC 1 cut(s) 147
BlsI GCNGC 1 cut(s) 148
Bme1390I CCNGG 2 cut(s) 173, 174
BmeT110I CYCGRG 1 cut(s) 172
BmiI GGNNCC 1 cut(s) 30
BmrFI CCNGG 2 cut(s) 173, 174
BplI GAGNNNNNCTC 2 cut(s) 118, 150
Bpu14I TTCGAA 1 cut(s) 96
BpuMI CCSGG 2 cut(s) 173, 174
BsaJI CCNNGG 2 cut(s) 33, 172
BseDI CCNNGG 2 cut(s) 33, 172
BseXI GCAGC 1 cut(s) 158
BshFI GGCC 1 cut(s) 10
BsiHKAI GWGCWC 1 cut(s) 90
BsiHKCI CYCGRG 1 cut(s) 172
BsiSI CCGG 1 cut(s) 173
BsnI GGCC 1 cut(s) 10
BsoBI CYCGRG 1 cut(s) 172
Bsp119I TTCGAA 1 cut(s) 96
Bsp1286I GDGCHC 1 cut(s) 90
Bsp143I GATC 1 cut(s) 28
BspACI CCGC 1 cut(s) 177
BspANI GGCC 1 cut(s) 10
BspLI GGNNCC 1 cut(s) 30
BspPI GGATC 2 cut(s) 23, 36
BspT104I TTCGAA 1 cut(s) 96
BssECI CCNNGG 2 cut(s) 33, 172
BssMI GATC 1 cut(s) 28
BstBI TTCGAA 1 cut(s) 96
BstKTI GATC 1 cut(s) 31
BstMBI GATC 1 cut(s) 28
BstSCI CCNGG 2 cut(s) 171, 172
BstV1I GCAGC 1 cut(s) 158
BstX2I RGATCY 1 cut(s) 28
BstYI RGATCY 1 cut(s) 28
BsuRI GGCC 1 cut(s) 10
Cfr9I CCCGGG 1 cut(s) 172
Csp6I GTAC 1 cut(s) 181
CviAII CATG 2 cut(s) 83, 187
CviJI RGCY 2 cut(s) 10, 134
CviKI_1 RGCY 2 cut(s) 10, 134
CviQI GTAC 1 cut(s) 181
DpnI GATC 1 cut(s) 30
DpnII GATC 1 cut(s) 28
EaeI YGGCCR 1 cut(s) 8
Eco88I CYCGRG 1 cut(s) 172
FaeI CATG 2 cut(s) 86, 190
FaiI YATR 3 cut(s) 84, 188, 206
FatI CATG 2 cut(s) 82, 186
FauI CCCGC 1 cut(s) 170
Fnu4HI GCNGC 1 cut(s) 147
Fsp4HI GCNGC 1 cut(s) 147
GluI GCNGC 1 cut(s) 147
HaeIII GGCC 1 cut(s) 10
HapII CCGG 1 cut(s) 173
Hin1II CATG 2 cut(s) 86, 190
HinfI GANTC 1 cut(s) 93
HpaII CCGG 1 cut(s) 173
Hpy188I TCNGA 2 cut(s) 37, 142
HpyCH4IV ACGT 1 cut(s) 39
HpyCH4V TGCA 2 cut(s) 77, 190
HpySE526I ACGT 1 cut(s) 39
Hsp92II CATG 2 cut(s) 86, 190
Kzo9I GATC 1 cut(s) 28
LpnPI CCDG 2 cut(s) 144, 186
Lsp1109I GCAGC 1 cut(s) 158
MaeII ACGT 1 cut(s) 39
MalI GATC 1 cut(s) 30
MboI GATC 1 cut(s) 28
MboII GAAGA 1 cut(s) 110
MflI RGATCY 1 cut(s) 28
MhlI GDGCHC 1 cut(s) 90
MlsI TGGCCA 1 cut(s) 10
MluCI AATT 2 cut(s) 151, 210
MluNI TGGCCA 1 cut(s) 10
MnlI CCTC 2 cut(s) 43, 47
Mox20I TGGCCA 1 cut(s) 10
MscI TGGCCA 1 cut(s) 10
MseI TTAA 2 cut(s) 119, 194
Msp20I TGGCCA 1 cut(s) 10
MspI CCGG 1 cut(s) 173
MspR9I CCNGG 2 cut(s) 173, 174
NciI CCSGG 2 cut(s) 173, 174
NdeII GATC 1 cut(s) 28
NlaIII CATG 2 cut(s) 86, 190
NlaIV GGNNCC 1 cut(s) 30
NspV TTCGAA 1 cut(s) 96
PfeI GAWTC 1 cut(s) 93
PkrI GCNGC 1 cut(s) 148
PspN4I GGNNCC 1 cut(s) 30
PsuI RGATCY 1 cut(s) 28
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
SaqAI TTAA 2 cut(s) 119, 194
SatI GCNGC 1 cut(s) 147
Sau3AI GATC 1 cut(s) 28
ScrFI CCNGG 2 cut(s) 173, 174
SduI GDGCHC 1 cut(s) 90
SetI ASST 3 cut(s) 42, 117, 136
SfuI TTCGAA 1 cut(s) 96
SmaI CCCGGG 1 cut(s) 174
Sse9I AATT 2 cut(s) 151, 210
SsiI CCGC 1 cut(s) 177
StyD4I CCNGG 2 cut(s) 171, 172
TaiI ACGT 1 cut(s) 42
TaqI TCGA 1 cut(s) 96
TasI AATT 2 cut(s) 151, 210
TfiI GAWTC 1 cut(s) 93
Tru1I TTAA 2 cut(s) 119, 194
Tru9I TTAA 2 cut(s) 119, 194
TseI GCWGC 1 cut(s) 146
TspMI CCCGGG 1 cut(s) 172
XapI RAATTY 1 cut(s) 151
XmaI CCCGGG 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.