TMV resistance protein N-like
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 245, 348 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 660, 1891 |
| AccIII | TCCGGA | 1 cut(s) | 915 |
| AciI | CCGC | 5 cut(s) | 827, 867, 1096, 1204, 1512 |
| AclWI | GGATC | 4 cut(s) | 109, 1116, 1364, 1582 |
| AcoI | YGGCCR | 1 cut(s) | 1495 |
| AcsI | RAATTY | 1 cut(s) | 734 |
| AcyI | GRCGYC | 2 cut(s) | 246, 1013 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 571, 660, 855, 1106, 1210, 1891 |
| AflIII | ACRYGT | 1 cut(s) | 1329 |
| AjnI | CCWGG | 4 cut(s) | 351, 1227, 1413, 1477 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 182, 214, 486, 518, 1095, 1127 |
| AleI | CACNNNNGTG | 1 cut(s) | 810 |
| Alw21I | GWGCWC | 4 cut(s) | 579, 1379, 1766, 1876 |
| Alw26I | GTCTC | 5 cut(s) | 838, 1004, 1132, 1220, 1824 |
| AlwI | GGATC | 4 cut(s) | 109, 1116, 1364, 1582 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 527, 860 |
| Aor13HI | TCCGGA | 1 cut(s) | 915 |
| AoxI | GGCC | 6 cut(s) | 562, 951, 1097, 1108, 1495, 1837 |
| ApeKI | GCWGC | 4 cut(s) | 309, 518, 521, 1048 |
| ApoI | RAATTY | 1 cut(s) | 734 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 626, 658, 698, 730, 887, 919 |
| AseI | ATTAAT | 1 cut(s) | 1248 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 101, 1158 |
| AspLEI | GCGC | 3 cut(s) | 248, 1523, 1631 |
| AspS9I | GGNCC | 4 cut(s) | 227, 563, 1098, 1417 |
| AsuC2I | CCSGG | 2 cut(s) | 983, 993 |
| AsuHPI | GGTGA | 6 cut(s) | 482, 1157, 1270, 1493, 1607, 1744 |
| AsuII | TTCGAA | 5 cut(s) | 239, 704, 843, 893, 1152 |
| AvaII | GGWCC | 2 cut(s) | 227, 1417 |
| BalI | TGGCCA | 1 cut(s) | 1497 |
| BanI | GGYRCC | 2 cut(s) | 245, 348 |
| BanII | GRGCYC | 2 cut(s) | 579, 1766 |
| BbsI | GAAGAC | 2 cut(s) | 693, 708 |
| Bbv12I | GWGCWC | 4 cut(s) | 579, 1379, 1766, 1876 |
| BbvI | GCAGC | 4 cut(s) | 321, 505, 533, 1060 |
| BccI | CCATC | 9 cut(s) | 92, 99, 270, 452, 1072, 1337, 1469, 1576, 1861 |
| BceAI | ACGGC | 1 cut(s) | 1846 |
| BciT130I | CCWGG | 4 cut(s) | 353, 1229, 1415, 1479 |
| BclI | TGATCA | 3 cut(s) | 127, 814, 1357 |
| BcnI | CCSGG | 2 cut(s) | 983, 993 |
| BcoDI | GTCTC | 5 cut(s) | 838, 1004, 1132, 1220, 1824 |
| BfaI | CTAG | 3 cut(s) | 6, 1779, 1900 |
| BfmI | CTRYAG | 2 cut(s) | 519, 592 |
| BfoI | RGCGCY | 2 cut(s) | 249, 1524 |
| BglII | AGATCT | 1 cut(s) | 147 |
| BisI | GCNGC | 7 cut(s) | 310, 519, 522, 867, 1049, 1097, 1513 |
| BlpI | GCTNAGC | 1 cut(s) | 1738 |
| BlsI | GCNGC | 7 cut(s) | 311, 520, 523, 868, 1050, 1098, 1514 |
| BmcAI | AGTACT | 4 cut(s) | 557, 691, 1492, 1814 |
| Bme1390I | CCNGG | 6 cut(s) | 353, 983, 993, 1229, 1415, 1479 |
| Bme18I | GGWCC | 2 cut(s) | 227, 1417 |
| BmgT120I | GGNCC | 4 cut(s) | 227, 563, 1098, 1417 |
| BmiI | GGNNCC | 7 cut(s) | 196, 247, 350, 374, 865, 990, 1100 |
| BmrFI | CCNGG | 6 cut(s) | 353, 983, 993, 1229, 1415, 1479 |
| BmsI | GCATC | 3 cut(s) | 438, 607, 1555 |
| BpiI | GAAGAC | 2 cut(s) | 693, 708 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1439, 1471 |
| BpmI | CTGGAG | 3 cut(s) | 882, 1489, 1644 |
| Bpu10I | CCTNAGC | 2 cut(s) | 478, 570 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1738 |
| Bpu14I | TTCGAA | 5 cut(s) | 239, 704, 843, 893, 1152 |
| BpuEI | CTTGAG | 1 cut(s) | 1204 |
| BpuMI | CCSGG | 2 cut(s) | 983, 993 |
| Bsa29I | ATCGAT | 1 cut(s) | 1580 |
| BsaHI | GRCGYC | 2 cut(s) | 246, 1013 |
| BsaI | GGTCTC | 2 cut(s) | 838, 1220 |
| BsaWI | WCCGGW | 1 cut(s) | 915 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1319, 1349, 1617, 1647 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 571, 660, 855, 1106, 1210, 1891 |
| Bse118I | RCCGGY | 2 cut(s) | 290, 1804 |
| Bse1I | ACTGG | 5 cut(s) | 100, 169, 865, 1498, 1618 |
| Bse3DI | GCAATG | 1 cut(s) | 972 |
| BseAI | TCCGGA | 1 cut(s) | 915 |
| BseBI | CCWGG | 4 cut(s) | 353, 1229, 1415, 1479 |
| BseCI | ATCGAT | 1 cut(s) | 1580 |
| BseGI | GGATG | 5 cut(s) | 67, 84, 262, 836, 1087 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 571, 660, 855, 1106, 1210, 1891 |
| BseMI | GCAATG | 1 cut(s) | 972 |
| BseMII | CTCAG | 6 cut(s) | 492, 556, 584, 956, 1353, 1889 |
| BseNI | ACTGG | 5 cut(s) | 100, 169, 865, 1498, 1618 |
| BseRI | GAGGAG | 5 cut(s) | 231, 234, 237, 808, 1327 |
| BseXI | GCAGC | 4 cut(s) | 321, 505, 533, 1060 |
| BseYI | CCCAGC | 1 cut(s) | 139 |
| BsgI | GTGCAG | 1 cut(s) | 37 |
| BshFI | GGCC | 6 cut(s) | 564, 953, 1099, 1110, 1497, 1839 |
| BshNI | GGYRCC | 2 cut(s) | 245, 348 |
| BshVI | ATCGAT | 1 cut(s) | 1580 |
| BsiHKAI | GWGCWC | 4 cut(s) | 579, 1379, 1766, 1876 |
| BsiSI | CCGG | 6 cut(s) | 291, 916, 983, 993, 1045, 1805 |
| BslFI | GGGAC | 1 cut(s) | 871 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 571, 660, 855, 1106, 1210, 1891 |
| BsmAI | GTCTC | 5 cut(s) | 838, 1004, 1132, 1220, 1824 |
| BsmBI | CGTCTC | 3 cut(s) | 1004, 1132, 1824 |
| BsmFI | GGGAC | 1 cut(s) | 871 |
| BsmI | GAATGC | 2 cut(s) | 1568, 1742 |
| BsnI | GGCC | 6 cut(s) | 564, 953, 1099, 1110, 1497, 1839 |
| Bso31I | GGTCTC | 2 cut(s) | 838, 1220 |
| Bsp119I | TTCGAA | 5 cut(s) | 239, 704, 843, 893, 1152 |
| Bsp1286I | GDGCHC | 4 cut(s) | 579, 1379, 1766, 1876 |
| Bsp13I | TCCGGA | 1 cut(s) | 915 |
| Bsp1407I | TGTACA | 1 cut(s) | 1290 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1738 |
| Bsp19I | CCATGG | 2 cut(s) | 1091, 1275 |
| BspACI | CCGC | 5 cut(s) | 827, 867, 1096, 1204, 1512 |
| BspANI | GGCC | 6 cut(s) | 564, 953, 1099, 1110, 1497, 1839 |
| BspCNI | CTCAG | 6 cut(s) | 491, 555, 583, 955, 1352, 1888 |
| BspDI | ATCGAT | 1 cut(s) | 1580 |
| BspEI | TCCGGA | 1 cut(s) | 915 |
| BspHI | TCATGA | 1 cut(s) | 505 |
| BspLI | GGNNCC | 7 cut(s) | 196, 247, 350, 374, 865, 990, 1100 |
| BspMAI | CTGCAG | 1 cut(s) | 523 |
| BspPI | GGATC | 4 cut(s) | 109, 1116, 1364, 1582 |
| BspQI | GCTCTTC | 1 cut(s) | 1154 |
| BspT104I | TTCGAA | 5 cut(s) | 239, 704, 843, 893, 1152 |
| BspT107I | GGYRCC | 2 cut(s) | 245, 348 |
| BspTNI | GGTCTC | 2 cut(s) | 838, 1220 |
| BsrDI | GCAATG | 1 cut(s) | 972 |
| BsrFI | RCCGGY | 2 cut(s) | 290, 1804 |
| BsrGI | TGTACA | 1 cut(s) | 1290 |
| BsrI | ACTGG | 5 cut(s) | 100, 169, 865, 1498, 1618 |
| BssAI | RCCGGY | 2 cut(s) | 290, 1804 |
| BssNI | GRCGYC | 2 cut(s) | 246, 1013 |
| BssT1I | CCWWGG | 4 cut(s) | 118, 189, 1091, 1275 |
| Bst2UI | CCWGG | 4 cut(s) | 353, 1229, 1415, 1479 |
| Bst4CI | ACNGT | 4 cut(s) | 660, 812, 850, 874 |
| Bst6I | CTCTTC | 6 cut(s) | 504, 746, 777, 1154, 1775, 1788 |
| BstACI | GRCGYC | 2 cut(s) | 246, 1013 |
| BstAUI | TGTACA | 1 cut(s) | 1290 |
| BstBI | TTCGAA | 5 cut(s) | 239, 704, 843, 893, 1152 |
| BstC8I | GCNNGC | 5 cut(s) | 888, 1000, 1204, 1379, 1897 |
| BstDEI | CTNAG | 9 cut(s) | 478, 542, 559, 570, 942, 1198, 1339, 1738, 1875 |
| BstDSI | CCRYGG | 4 cut(s) | 849, 870, 1091, 1275 |
| BstEII | GGTNACC | 1 cut(s) | 488 |
| BstF5I | GGATG | 5 cut(s) | 67, 84, 262, 836, 1087 |
| BstH2I | RGCGCY | 2 cut(s) | 249, 1524 |
| BstHHI | GCGC | 3 cut(s) | 248, 1523, 1631 |
| BstMAI | GTCTC | 5 cut(s) | 838, 1004, 1132, 1220, 1824 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 538, 775, 896, 995, 1374, 1518, 1540 |
| BstNI | CCWGG | 4 cut(s) | 353, 1229, 1415, 1479 |
| BstNSI | RCATGY | 2 cut(s) | 298, 1333 |
| BstPI | GGTNACC | 1 cut(s) | 488 |
| BstSCI | CCNGG | 6 cut(s) | 351, 981, 991, 1227, 1413, 1477 |
| BstSFI | CTRYAG | 2 cut(s) | 519, 592 |
| BstV1I | GCAGC | 4 cut(s) | 321, 505, 533, 1060 |
| BstV2I | GAAGAC | 2 cut(s) | 693, 708 |
| BstX2I | RGATCY | 3 cut(s) | 114, 147, 1121 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 169, 1718 |
| BstYI | RGATCY | 3 cut(s) | 114, 147, 1121 |
| Bsu15I | ATCGAT | 1 cut(s) | 1580 |
| BsuRI | GGCC | 6 cut(s) | 564, 953, 1099, 1110, 1497, 1839 |
| BsuTUI | ATCGAT | 1 cut(s) | 1580 |
| BtgI | CCRYGG | 4 cut(s) | 849, 870, 1091, 1275 |
| BtgZI | GCGATG | 1 cut(s) | 1194 |
| BtsCI | GGATG | 5 cut(s) | 67, 84, 262, 836, 1087 |
| BtsI | GCAGTG | 1 cut(s) | 25 |
| BtsIMutI | CAGTG | 3 cut(s) | 25, 162, 665 |
| Cac8I | GCNNGC | 5 cut(s) | 888, 1000, 1204, 1379, 1897 |
| CaiI | CAGNNNCTG | 2 cut(s) | 527, 860 |
| CciI | TCATGA | 1 cut(s) | 505 |
| CfoI | GCGC | 3 cut(s) | 248, 1523, 1631 |
| Cfr10I | RCCGGY | 2 cut(s) | 290, 1804 |
| Cfr13I | GGNCC | 4 cut(s) | 227, 563, 1098, 1417 |
| ClaI | ATCGAT | 1 cut(s) | 1580 |
| CseI | GACGC | 1 cut(s) | 1021 |
| DdeI | CTNAG | 9 cut(s) | 478, 542, 559, 570, 942, 1198, 1339, 1738, 1875 |
| DinI | GGCGCC | 1 cut(s) | 247 |
| EaeI | YGGCCR | 1 cut(s) | 1495 |
| Eam1104I | CTCTTC | 6 cut(s) | 504, 746, 777, 1154, 1775, 1788 |
| EarI | CTCTTC | 6 cut(s) | 504, 746, 777, 1154, 1775, 1788 |
| Ecl136II | GAGCTC | 2 cut(s) | 577, 1764 |
| Eco130I | CCWWGG | 4 cut(s) | 118, 189, 1091, 1275 |
| Eco24I | GRGCYC | 2 cut(s) | 579, 1766 |
| Eco31I | GGTCTC | 2 cut(s) | 838, 1220 |
| Eco47I | GGWCC | 2 cut(s) | 227, 1417 |
| Eco53kI | GAGCTC | 2 cut(s) | 577, 1764 |
| Eco91I | GGTNACC | 1 cut(s) | 488 |
| EcoICRI | GAGCTC | 2 cut(s) | 577, 1764 |
| EcoO109I | RGGNCCY | 2 cut(s) | 227, 563 |
| EcoO65I | GGTNACC | 1 cut(s) | 488 |
| EcoRI | GAATTC | 1 cut(s) | 734 |
| EcoRII | CCWGG | 4 cut(s) | 351, 1227, 1413, 1477 |
| EcoT14I | CCWWGG | 4 cut(s) | 118, 189, 1091, 1275 |
| EcoT22I | ATGCAT | 1 cut(s) | 1570 |
| EcoT38I | GRGCYC | 2 cut(s) | 579, 1766 |
| EgeI | GGCGCC | 1 cut(s) | 247 |
| EheI | GGCGCC | 1 cut(s) | 247 |
| ErhI | CCWWGG | 4 cut(s) | 118, 189, 1091, 1275 |
| Esp3I | CGTCTC | 3 cut(s) | 1004, 1132, 1824 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 182, 214 |
| FaqI | GGGAC | 1 cut(s) | 871 |
| FauI | CCCGC | 1 cut(s) | 1211 |
| FauNDI | CATATG | 1 cut(s) | 444 |
| FbaI | TGATCA | 3 cut(s) | 127, 814, 1357 |
| Fnu4HI | GCNGC | 7 cut(s) | 310, 519, 522, 867, 1049, 1097, 1513 |
| FokI | GGATG | 5 cut(s) | 71, 74, 249, 823, 1074 |
| FriOI | GRGCYC | 2 cut(s) | 579, 1766 |
| Fsp4HI | GCNGC | 7 cut(s) | 310, 519, 522, 867, 1049, 1097, 1513 |
| FspBI | CTAG | 3 cut(s) | 6, 1779, 1900 |
| GlaI | GCGC | 3 cut(s) | 247, 1522, 1630 |
| GluI | GCNGC | 7 cut(s) | 310, 519, 522, 867, 1049, 1097, 1513 |
| GsaI | CCCAGC | 1 cut(s) | 143 |
| GsuI | CTGGAG | 3 cut(s) | 882, 1489, 1644 |
| HaeII | RGCGCY | 2 cut(s) | 249, 1524 |
| HaeIII | GGCC | 6 cut(s) | 564, 953, 1099, 1110, 1497, 1839 |
| HapII | CCGG | 6 cut(s) | 291, 916, 983, 993, 1045, 1805 |
| HgaI | GACGC | 1 cut(s) | 1021 |
| HhaI | GCGC | 3 cut(s) | 248, 1523, 1631 |
| Hin1I | GRCGYC | 2 cut(s) | 246, 1013 |
| Hin6I | GCGC | 3 cut(s) | 246, 1521, 1629 |
| HinP1I | GCGC | 3 cut(s) | 246, 1521, 1629 |
| HpaII | CCGG | 6 cut(s) | 291, 916, 983, 993, 1045, 1805 |
| HphI | GGTGA | 6 cut(s) | 482, 1157, 1270, 1493, 1607, 1744 |
| Hpy166II | GTNNAC | 2 cut(s) | 105, 877 |
| Hpy8I | GTNNAC | 2 cut(s) | 105, 877 |
| HpyAV | CCTTC | 7 cut(s) | 208, 240, 817, 850, 1121, 1761, 1829 |
| HpyCH4III | ACNGT | 4 cut(s) | 660, 812, 850, 874 |
| HpyCH4IV | ACGT | 1 cut(s) | 1105 |
| HpyCH4V | TGCA | 7 cut(s) | 18, 454, 521, 748, 1253, 1534, 1568 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 538, 775, 896, 995, 1374, 1518, 1540 |
| HpyF3I | CTNAG | 9 cut(s) | 478, 542, 559, 570, 942, 1198, 1339, 1738, 1875 |
| HpySE526I | ACGT | 1 cut(s) | 1105 |
| Hsp92I | GRCGYC | 2 cut(s) | 246, 1013 |
| HspAI | GCGC | 3 cut(s) | 246, 1521, 1629 |
| KasI | GGCGCC | 1 cut(s) | 245 |
| Kpn2I | TCCGGA | 1 cut(s) | 915 |
| Ksp22I | TGATCA | 3 cut(s) | 127, 814, 1357 |
| LguI | GCTCTTC | 1 cut(s) | 1154 |
| Lsp1109I | GCAGC | 4 cut(s) | 321, 505, 533, 1060 |
| LweI | GCATC | 3 cut(s) | 438, 607, 1555 |
| MaeI | CTAG | 3 cut(s) | 6, 1779, 1900 |
| MaeII | ACGT | 1 cut(s) | 1105 |
| MaeIII | GTNAC | 3 cut(s) | 488, 1348, 1558 |
| MflI | RGATCY | 3 cut(s) | 114, 147, 1121 |
| MhlI | GDGCHC | 4 cut(s) | 579, 1379, 1766, 1876 |
| MlsI | TGGCCA | 1 cut(s) | 1497 |
| MluCI | AATT | 5 cut(s) | 734, 743, 1237, 1546, 1846 |
| MluNI | TGGCCA | 1 cut(s) | 1497 |
| Mly113I | GGCGCC | 1 cut(s) | 246 |
| MlyI | GAGTC | 5 cut(s) | 341, 448, 1093, 1436, 1496 |
| MmeI | TCCRAC | 3 cut(s) | 104, 279, 1450 |
| Mox20I | TGGCCA | 1 cut(s) | 1497 |
| Mph1103I | ATGCAT | 1 cut(s) | 1570 |
| MroI | TCCGGA | 1 cut(s) | 915 |
| MroXI | GAANNNNTTC | 2 cut(s) | 101, 1158 |
| MscI | TGGCCA | 1 cut(s) | 1497 |
| MseI | TTAA | 2 cut(s) | 581, 1248 |
| MslI | CAYNNNNRTG | 4 cut(s) | 167, 173, 810, 1382 |
| Msp20I | TGGCCA | 1 cut(s) | 1497 |
| MspI | CCGG | 6 cut(s) | 291, 916, 983, 993, 1045, 1805 |
| MspR9I | CCNGG | 6 cut(s) | 353, 983, 993, 1229, 1415, 1479 |
| Mva1269I | GAATGC | 2 cut(s) | 1568, 1742 |
| MvaI | CCWGG | 4 cut(s) | 353, 1229, 1415, 1479 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 538, 775, 896, 995, 1374, 1518, 1540 |
| NarI | GGCGCC | 1 cut(s) | 246 |
| NciI | CCSGG | 2 cut(s) | 983, 993 |
| NcoI | CCATGG | 2 cut(s) | 1091, 1275 |
| NdeI | CATATG | 1 cut(s) | 444 |
| NlaIV | GGNNCC | 7 cut(s) | 196, 247, 350, 374, 865, 990, 1100 |
| NmeAIII | GCCGAG | 2 cut(s) | 1028, 1041 |
| NmuCI | GTSAC | 2 cut(s) | 488, 1348 |
| NsiI | ATGCAT | 1 cut(s) | 1570 |
| NspI | RCATGY | 2 cut(s) | 298, 1333 |
| NspV | TTCGAA | 5 cut(s) | 239, 704, 843, 893, 1152 |
| OliI | CACNNNNGTG | 1 cut(s) | 810 |
| PagI | TCATGA | 1 cut(s) | 505 |
| PciI | ACATGT | 1 cut(s) | 1329 |
| PciSI | GCTCTTC | 1 cut(s) | 1154 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 878 |
| PctI | GAATGC | 2 cut(s) | 1568, 1742 |
| PdmI | GAANNNNTTC | 2 cut(s) | 101, 1158 |
| PfeI | GAWTC | 5 cut(s) | 322, 386, 511, 946, 1027 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 660, 1891 |
| PfoI | TCCNGGA | 1 cut(s) | 991 |
| PkrI | GCNGC | 7 cut(s) | 311, 520, 523, 868, 1050, 1098, 1514 |
| PleI | GAGTC | 5 cut(s) | 340, 447, 1092, 1436, 1496 |
| PluTI | GGCGCC | 1 cut(s) | 249 |
| PpsI | GAGTC | 5 cut(s) | 340, 447, 1092, 1436, 1496 |
| PpuMI | RGGWCCY | 1 cut(s) | 227 |
| PscI | ACATGT | 1 cut(s) | 1329 |
| PshBI | ATTAAT | 1 cut(s) | 1248 |
| Psp124BI | GAGCTC | 2 cut(s) | 579, 1766 |
| Psp5II | RGGWCCY | 1 cut(s) | 227 |
| Psp6I | CCWGG | 4 cut(s) | 351, 1227, 1413, 1477 |
| PspEI | GGTNACC | 1 cut(s) | 488 |
| PspFI | CCCAGC | 1 cut(s) | 139 |
| PspGI | CCWGG | 4 cut(s) | 351, 1227, 1413, 1477 |
| PspN4I | GGNNCC | 7 cut(s) | 196, 247, 350, 374, 865, 990, 1100 |
| PspPI | GGNCC | 4 cut(s) | 227, 563, 1098, 1417 |
| PspPPI | RGGWCCY | 1 cut(s) | 227 |
| PstI | CTGCAG | 1 cut(s) | 523 |
| PstNI | CAGNNNCTG | 2 cut(s) | 527, 860 |
| PsuI | RGATCY | 3 cut(s) | 114, 147, 1121 |
| RseI | CAYNNNNRTG | 4 cut(s) | 167, 173, 810, 1382 |
| SacI | GAGCTC | 2 cut(s) | 579, 1766 |
| SapI | GCTCTTC | 1 cut(s) | 1154 |
| SaqAI | TTAA | 2 cut(s) | 581, 1248 |
| SatI | GCNGC | 7 cut(s) | 310, 519, 522, 867, 1049, 1097, 1513 |
| Sau96I | GGNCC | 4 cut(s) | 227, 563, 1098, 1417 |
| ScaI | AGTACT | 4 cut(s) | 557, 691, 1492, 1814 |
| SchI | GAGTC | 5 cut(s) | 341, 448, 1093, 1436, 1496 |
| ScrFI | CCNGG | 6 cut(s) | 353, 983, 993, 1229, 1415, 1479 |
| SduI | GDGCHC | 4 cut(s) | 579, 1379, 1766, 1876 |
| SfaNI | GCATC | 3 cut(s) | 438, 607, 1555 |
| SfcI | CTRYAG | 2 cut(s) | 519, 592 |
| SfoI | GGCGCC | 1 cut(s) | 247 |
| SfuI | TTCGAA | 5 cut(s) | 239, 704, 843, 893, 1152 |
| SinI | GGWCC | 2 cut(s) | 227, 1417 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 167, 173, 810, 1382 |
| SmlI | CTYRAG | 1 cut(s) | 1219 |
| SmoI | CTYRAG | 1 cut(s) | 1219 |
| Sse9I | AATT | 5 cut(s) | 734, 743, 1237, 1546, 1846 |
| SsiI | CCGC | 5 cut(s) | 827, 867, 1096, 1204, 1512 |
| SspDI | GGCGCC | 1 cut(s) | 245 |
| SspMI | CTAG | 3 cut(s) | 6, 1779, 1900 |
| SstI | GAGCTC | 2 cut(s) | 579, 1766 |
| StyD4I | CCNGG | 6 cut(s) | 351, 981, 991, 1227, 1413, 1477 |
| StyI | CCWWGG | 4 cut(s) | 118, 189, 1091, 1275 |
| TaaI | ACNGT | 4 cut(s) | 660, 812, 850, 874 |
| TaiI | ACGT | 1 cut(s) | 1108 |
| TasI | AATT | 5 cut(s) | 734, 743, 1237, 1546, 1846 |
| TatI | WGTACW | 8 cut(s) | 279, 555, 689, 723, 876, 1290, 1490, 1812 |
| TauI | GCSGC | 3 cut(s) | 869, 1099, 1515 |
| TfiI | GAWTC | 5 cut(s) | 322, 386, 511, 946, 1027 |
| Tru1I | TTAA | 2 cut(s) | 581, 1248 |
| Tru9I | TTAA | 2 cut(s) | 581, 1248 |
| TscAI | CASTG | 3 cut(s) | 25, 169, 665 |
| TseFI | GTSAC | 2 cut(s) | 488, 1348 |
| TseI | GCWGC | 4 cut(s) | 309, 518, 521, 1048 |
| Tsp45I | GTSAC | 2 cut(s) | 488, 1348 |
| TspDTI | ATGAA | 9 cut(s) | 57, 222, 381, 494, 836, 1085, 1234, 1329, 1662 |
| TspGWI | ACGGA | 1 cut(s) | 1114 |
| TspRI | CASTG | 3 cut(s) | 25, 169, 665 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 660, 1891 |
| VpaK11BI | GGWCC | 2 cut(s) | 227, 1417 |
| VspI | ATTAAT | 1 cut(s) | 1248 |
| XapI | RAATTY | 1 cut(s) | 734 |
| XceI | RCATGY | 2 cut(s) | 298, 1333 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1667, 1892 |
| XmnI | GAANNNNTTC | 2 cut(s) | 101, 1158 |
| XspI | CTAG | 3 cut(s) | 6, 1779, 1900 |
| ZrmI | AGTACT | 4 cut(s) | 557, 691, 1492, 1814 |
| Zsp2I | ATGCAT | 1 cut(s) | 1570 |