Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 494 |
| AciI | CCGC | 1 cut(s) | 23 |
| AclI | AACGTT | 1 cut(s) | 164 |
| AclWI | GGATC | 3 cut(s) | 213, 316, 620 |
| AcuI | CTGAAG | 1 cut(s) | 731 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 79, 494, 677 |
| AgeI | ACCGGT | 1 cut(s) | 521 |
| AgsI | TTSAA | 3 cut(s) | 112, 571, 655 |
| AjnI | CCWGG | 1 cut(s) | 617 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 51, 83 |
| AluBI | AGCT | 7 cut(s) | 19, 90, 107, 244, 394, 407, 706 |
| AluI | AGCT | 7 cut(s) | 19, 90, 107, 244, 394, 407, 706 |
| Alw21I | GWGCWC | 2 cut(s) | 396, 708 |
| AlwI | GGATC | 3 cut(s) | 213, 316, 620 |
| AoxI | GGCC | 3 cut(s) | 70, 370, 615 |
| ApeKI | GCWGC | 1 cut(s) | 173 |
| AseI | ATTAAT | 1 cut(s) | 278 |
| AsiGI | ACCGGT | 1 cut(s) | 521 |
| AspA2I | CCTAGG | 1 cut(s) | 373 |
| AspLEI | GCGC | 1 cut(s) | 141 |
| AspS9I | GGNCC | 2 cut(s) | 519, 615 |
| AvaII | GGWCC | 1 cut(s) | 519 |
| AvrII | CCTAGG | 1 cut(s) | 373 |
| AxyI | CCTNAGG | 1 cut(s) | 675 |
| BanII | GRGCYC | 2 cut(s) | 396, 708 |
| BauI | CACGAG | 1 cut(s) | 14 |
| Bbv12I | GWGCWC | 2 cut(s) | 396, 708 |
| BbvI | GCAGC | 1 cut(s) | 160 |
| BccI | CCATC | 1 cut(s) | 262 |
| BciT130I | CCWGG | 1 cut(s) | 619 |
| BclI | TGATCA | 1 cut(s) | 192 |
| BfaI | CTAG | 3 cut(s) | 273, 374, 666 |
| BfmI | CTRYAG | 1 cut(s) | 692 |
| BisI | GCNGC | 2 cut(s) | 24, 174 |
| BlnI | CCTAGG | 1 cut(s) | 373 |
| BlsI | GCNGC | 2 cut(s) | 25, 175 |
| Bme1390I | CCNGG | 1 cut(s) | 619 |
| Bme18I | GGWCC | 1 cut(s) | 519 |
| BmgT120I | GGNCC | 2 cut(s) | 519, 615 |
| BmiI | GGNNCC | 2 cut(s) | 520, 636 |
| BmrFI | CCNGG | 1 cut(s) | 619 |
| BpuEI | CTTGAG | 1 cut(s) | 87 |
| BsaAI | YACGTR | 1 cut(s) | 222 |
| BsaJI | CCNNGG | 5 cut(s) | 67, 96, 373, 618, 629 |
| BsaWI | WCCGGW | 1 cut(s) | 521 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 655, 685 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 79, 494, 677 |
| Bse118I | RCCGGY | 1 cut(s) | 521 |
| Bse21I | CCTNAGG | 1 cut(s) | 675 |
| BseBI | CCWGG | 1 cut(s) | 619 |
| BseDI | CCNNGG | 5 cut(s) | 67, 96, 373, 618, 629 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 79, 494, 677 |
| BseXI | GCAGC | 1 cut(s) | 160 |
| BshFI | GGCC | 3 cut(s) | 72, 372, 617 |
| BshTI | ACCGGT | 1 cut(s) | 521 |
| BsiHKAI | GWGCWC | 2 cut(s) | 396, 708 |
| BsiSI | CCGG | 1 cut(s) | 522 |
| BslFI | GGGAC | 2 cut(s) | 436, 532 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 79, 494, 677 |
| BsmFI | GGGAC | 2 cut(s) | 436, 532 |
| BsnI | GGCC | 3 cut(s) | 72, 372, 617 |
| Bsp1286I | GDGCHC | 2 cut(s) | 396, 708 |
| Bsp143I | GATC | 4 cut(s) | 192, 205, 321, 625 |
| Bsp19I | CCATGG | 1 cut(s) | 629 |
| BspACI | CCGC | 1 cut(s) | 23 |
| BspANI | GGCC | 3 cut(s) | 72, 372, 617 |
| BspHI | TCATGA | 1 cut(s) | 189 |
| BspLI | GGNNCC | 2 cut(s) | 520, 636 |
| BspPI | GGATC | 3 cut(s) | 213, 316, 620 |
| BspQI | GCTCTTC | 2 cut(s) | 414, 696 |
| BsrFI | RCCGGY | 1 cut(s) | 521 |
| BssAI | RCCGGY | 1 cut(s) | 521 |
| BssECI | CCNNGG | 5 cut(s) | 67, 96, 373, 618, 629 |
| BssMI | GATC | 4 cut(s) | 192, 205, 321, 625 |
| BssSI | CACGAG | 1 cut(s) | 14 |
| BssT1I | CCWWGG | 4 cut(s) | 67, 96, 373, 629 |
| Bst2BI | CACGAG | 1 cut(s) | 14 |
| Bst2UI | CCWGG | 1 cut(s) | 619 |
| Bst6I | CTCTTC | 2 cut(s) | 414, 696 |
| BstBAI | YACGTR | 1 cut(s) | 222 |
| BstC8I | GCNNGC | 3 cut(s) | 8, 21, 178 |
| BstDEI | CTNAG | 1 cut(s) | 675 |
| BstDSI | CCRYGG | 1 cut(s) | 629 |
| BstHHI | GCGC | 1 cut(s) | 141 |
| BstKTI | GATC | 4 cut(s) | 195, 208, 324, 628 |
| BstMBI | GATC | 4 cut(s) | 192, 205, 321, 625 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 16 |
| BstNI | CCWGG | 1 cut(s) | 619 |
| BstNSI | RCATGY | 2 cut(s) | 10, 724 |
| BstSCI | CCNGG | 1 cut(s) | 617 |
| BstSFI | CTRYAG | 1 cut(s) | 692 |
| BstSNI | TACGTA | 1 cut(s) | 222 |
| BstV1I | GCAGC | 1 cut(s) | 160 |
| BstX2I | RGATCY | 1 cut(s) | 321 |
| BstYI | RGATCY | 1 cut(s) | 321 |
| Bsu36I | CCTNAGG | 1 cut(s) | 675 |
| BsuRI | GGCC | 3 cut(s) | 72, 372, 617 |
| BtgI | CCRYGG | 1 cut(s) | 629 |
| Cac8I | GCNNGC | 3 cut(s) | 8, 21, 178 |
| CciI | TCATGA | 1 cut(s) | 189 |
| CfoI | GCGC | 1 cut(s) | 141 |
| Cfr10I | RCCGGY | 1 cut(s) | 521 |
| Cfr13I | GGNCC | 2 cut(s) | 519, 615 |
| CspAI | ACCGGT | 1 cut(s) | 521 |
| CviAII | CATG | 9 cut(s) | 7, 31, 56, 190, 537, 554, 630, 721, 725 |
| DdeI | CTNAG | 1 cut(s) | 675 |
| DpnI | GATC | 4 cut(s) | 194, 207, 323, 627 |
| DpnII | GATC | 4 cut(s) | 192, 205, 321, 625 |
| Eam1104I | CTCTTC | 2 cut(s) | 414, 696 |
| EarI | CTCTTC | 2 cut(s) | 414, 696 |
| Ecl136II | GAGCTC | 2 cut(s) | 394, 706 |
| Eco105I | TACGTA | 1 cut(s) | 222 |
| Eco130I | CCWWGG | 4 cut(s) | 67, 96, 373, 629 |
| Eco24I | GRGCYC | 2 cut(s) | 396, 708 |
| Eco47I | GGWCC | 1 cut(s) | 519 |
| Eco53kI | GAGCTC | 2 cut(s) | 394, 706 |
| Eco57I | CTGAAG | 1 cut(s) | 731 |
| Eco81I | CCTNAGG | 1 cut(s) | 675 |
| EcoICRI | GAGCTC | 2 cut(s) | 394, 706 |
| EcoO109I | RGGNCCY | 1 cut(s) | 615 |
| EcoRII | CCWGG | 1 cut(s) | 617 |
| EcoT14I | CCWWGG | 4 cut(s) | 67, 96, 373, 629 |
| EcoT22I | ATGCAT | 2 cut(s) | 538, 726 |
| EcoT38I | GRGCYC | 2 cut(s) | 396, 708 |
| ErhI | CCWWGG | 4 cut(s) | 67, 96, 373, 629 |
| FaeI | CATG | 9 cut(s) | 10, 34, 59, 193, 540, 557, 633, 724, 728 |
| FaqI | GGGAC | 2 cut(s) | 436, 532 |
| FatI | CATG | 9 cut(s) | 6, 30, 55, 189, 536, 553, 629, 720, 724 |
| FbaI | TGATCA | 1 cut(s) | 192 |
| Fnu4HI | GCNGC | 2 cut(s) | 24, 174 |
| FriOI | GRGCYC | 2 cut(s) | 396, 708 |
| Fsp4HI | GCNGC | 2 cut(s) | 24, 174 |
| FspBI | CTAG | 3 cut(s) | 273, 374, 666 |
| GlaI | GCGC | 1 cut(s) | 140 |
| GluI | GCNGC | 2 cut(s) | 24, 174 |
| HaeIII | GGCC | 3 cut(s) | 72, 372, 617 |
| HapII | CCGG | 1 cut(s) | 522 |
| HhaI | GCGC | 1 cut(s) | 141 |
| Hin1II | CATG | 9 cut(s) | 10, 34, 59, 193, 540, 557, 633, 724, 728 |
| Hin6I | GCGC | 1 cut(s) | 139 |
| HinP1I | GCGC | 1 cut(s) | 139 |
| HincII | GTYRAC | 1 cut(s) | 49 |
| HindII | GTYRAC | 1 cut(s) | 49 |
| HindIII | AAGCTT | 1 cut(s) | 105 |
| HinfI | GANTC | 2 cut(s) | 432, 686 |
| HpaII | CCGG | 1 cut(s) | 522 |
| Hpy166II | GTNNAC | 2 cut(s) | 49, 149 |
| Hpy188I | TCNGA | 1 cut(s) | 414 |
| Hpy188III | TCNNGA | 3 cut(s) | 190, 488, 749 |
| Hpy8I | GTNNAC | 2 cut(s) | 49, 149 |
| HpyAV | CCTTC | 1 cut(s) | 359 |
| HpyCH4IV | ACGT | 3 cut(s) | 164, 221, 449 |
| HpyCH4V | TGCA | 3 cut(s) | 10, 536, 724 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 16 |
| HpyF3I | CTNAG | 1 cut(s) | 675 |
| HpySE526I | ACGT | 3 cut(s) | 164, 221, 449 |
| Hsp92II | CATG | 9 cut(s) | 10, 34, 59, 193, 540, 557, 633, 724, 728 |
| HspAI | GCGC | 1 cut(s) | 139 |
| Ksp22I | TGATCA | 1 cut(s) | 192 |
| Kzo9I | GATC | 4 cut(s) | 192, 205, 321, 625 |
| LguI | GCTCTTC | 2 cut(s) | 414, 696 |
| LmnI | GCTCC | 1 cut(s) | 391 |
| LpnPI | CCDG | 8 cut(s) | 162, 501, 535, 604, 631, 668, 680, 734 |
| Lsp1109I | GCAGC | 1 cut(s) | 160 |
| MaeI | CTAG | 3 cut(s) | 273, 374, 666 |
| MaeII | ACGT | 3 cut(s) | 164, 221, 449 |
| MaeIII | GTNAC | 2 cut(s) | 584, 716 |
| MalI | GATC | 4 cut(s) | 194, 207, 323, 627 |
| MboI | GATC | 4 cut(s) | 192, 205, 321, 625 |
| MboII | GAAGA | 5 cut(s) | 328, 331, 401, 583, 713 |
| MflI | RGATCY | 1 cut(s) | 321 |
| MhlI | GDGCHC | 2 cut(s) | 396, 708 |
| MluCI | AATT | 4 cut(s) | 112, 286, 512, 733 |
| MmeI | TCCRAC | 1 cut(s) | 407 |
| MnlI | CCTC | 5 cut(s) | 83, 120, 147, 472, 681 |
| Mph1103I | ATGCAT | 2 cut(s) | 538, 726 |
| MseI | TTAA | 3 cut(s) | 278, 399, 732 |
| MslI | CAYNNNNRTG | 1 cut(s) | 330 |
| MspI | CCGG | 1 cut(s) | 522 |
| MspR9I | CCNGG | 1 cut(s) | 619 |
| MvaI | CCWGG | 1 cut(s) | 619 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 16 |
| NcoI | CCATGG | 1 cut(s) | 629 |
| NdeII | GATC | 4 cut(s) | 192, 205, 321, 625 |
| NlaIII | CATG | 9 cut(s) | 10, 34, 59, 193, 540, 557, 633, 724, 728 |
| NlaIV | GGNNCC | 2 cut(s) | 520, 636 |
| NmuCI | GTSAC | 1 cut(s) | 716 |
| NsiI | ATGCAT | 2 cut(s) | 538, 726 |
| NspI | RCATGY | 2 cut(s) | 10, 724 |
| PaeI | GCATGC | 1 cut(s) | 10 |
| PagI | TCATGA | 1 cut(s) | 189 |
| PciSI | GCTCTTC | 2 cut(s) | 414, 696 |
| PfeI | GAWTC | 2 cut(s) | 432, 686 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 494 |
| PinAI | ACCGGT | 1 cut(s) | 521 |
| PkrI | GCNGC | 2 cut(s) | 25, 175 |
| Ppu21I | YACGTR | 1 cut(s) | 222 |
| PshBI | ATTAAT | 1 cut(s) | 278 |
| Psp124BI | GAGCTC | 2 cut(s) | 396, 708 |
| Psp1406I | AACGTT | 1 cut(s) | 164 |
| Psp6I | CCWGG | 1 cut(s) | 617 |
| PspGI | CCWGG | 1 cut(s) | 617 |
| PspN4I | GGNNCC | 2 cut(s) | 520, 636 |
| PspPI | GGNCC | 2 cut(s) | 519, 615 |
| PsuI | RGATCY | 1 cut(s) | 321 |
| RseI | CAYNNNNRTG | 1 cut(s) | 330 |
| SacI | GAGCTC | 2 cut(s) | 396, 708 |
| SapI | GCTCTTC | 2 cut(s) | 414, 696 |
| SaqAI | TTAA | 3 cut(s) | 278, 399, 732 |
| SatI | GCNGC | 2 cut(s) | 24, 174 |
| Sau3AI | GATC | 4 cut(s) | 192, 205, 321, 625 |
| Sau96I | GGNCC | 2 cut(s) | 519, 615 |
| ScrFI | CCNGG | 1 cut(s) | 619 |
| SduI | GDGCHC | 2 cut(s) | 396, 708 |
| SfcI | CTRYAG | 1 cut(s) | 692 |
| SinI | GGWCC | 1 cut(s) | 519 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 330 |
| SmlI | CTYRAG | 1 cut(s) | 102 |
| SmoI | CTYRAG | 1 cut(s) | 102 |
| SnaBI | TACGTA | 1 cut(s) | 222 |
| SphI | GCATGC | 1 cut(s) | 10 |
| Sse9I | AATT | 4 cut(s) | 112, 286, 512, 733 |
| SsiI | CCGC | 1 cut(s) | 23 |
| SspI | AATATT | 2 cut(s) | 482, 610 |
| SspMI | CTAG | 3 cut(s) | 273, 374, 666 |
| SstI | GAGCTC | 2 cut(s) | 396, 708 |
| StyD4I | CCNGG | 1 cut(s) | 617 |
| StyI | CCWWGG | 4 cut(s) | 67, 96, 373, 629 |
| TaiI | ACGT | 3 cut(s) | 167, 224, 452 |
| TaqI | TCGA | 1 cut(s) | 308 |
| TasI | AATT | 4 cut(s) | 112, 286, 512, 733 |
| TauI | GCSGC | 1 cut(s) | 26 |
| TfiI | GAWTC | 2 cut(s) | 432, 686 |
| Tru1I | TTAA | 3 cut(s) | 278, 399, 732 |
| Tru9I | TTAA | 3 cut(s) | 278, 399, 732 |
| TseFI | GTSAC | 1 cut(s) | 716 |
| TseI | GCWGC | 1 cut(s) | 173 |
| Tsp45I | GTSAC | 1 cut(s) | 716 |
| TspDTI | ATGAA | 5 cut(s) | 72, 378, 525, 542, 776 |
| TspGWI | ACGGA | 3 cut(s) | 95, 166, 627 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 494 |
| VpaK11BI | GGWCC | 1 cut(s) | 519 |
| VspI | ATTAAT | 1 cut(s) | 278 |
| XceI | RCATGY | 2 cut(s) | 10, 724 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 596 |
| XmaJI | CCTAGG | 1 cut(s) | 373 |
| XspI | CTAG | 3 cut(s) | 273, 374, 666 |
| Zsp2I | ATGCAT | 2 cut(s) | 538, 726 |