ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| EF-hand_7 | PF13499 | 11 - 69 | 3.3e-11 | EF-hand domain pair |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 95 |
| AciI | CCGC | 1 cut(s) | 95 |
| AclWI | GGATC | 1 cut(s) | 174 |
| AluBI | AGCT | 1 cut(s) | 196 |
| AluI | AGCT | 1 cut(s) | 196 |
| Alw21I | GWGCWC | 1 cut(s) | 198 |
| Alw26I | GTCTC | 1 cut(s) | 82 |
| AlwI | GGATC | 1 cut(s) | 174 |
| AsuHPI | GGTGA | 2 cut(s) | 77, 246 |
| BanII | GRGCYC | 1 cut(s) | 198 |
| Bbv12I | GWGCWC | 1 cut(s) | 198 |
| BccI | CCATC | 1 cut(s) | 167 |
| BcoDI | GTCTC | 1 cut(s) | 82 |
| BmsI | GCATC | 3 cut(s) | 7, 58, 88 |
| BpmI | CTGGAG | 1 cut(s) | 209 |
| Bpu10I | CCTNAGC | 1 cut(s) | 21 |
| Bsa29I | ATCGAT | 1 cut(s) | 159 |
| BsaBI | GATNNNNATC | 1 cut(s) | 165 |
| Bse1I | ACTGG | 1 cut(s) | 192 |
| Bse8I | GATNNNNATC | 1 cut(s) | 165 |
| BseCI | ATCGAT | 1 cut(s) | 159 |
| BseGI | GGATG | 2 cut(s) | 35, 103 |
| BseJI | GATNNNNATC | 1 cut(s) | 165 |
| BseNI | ACTGG | 1 cut(s) | 192 |
| BseRI | GAGGAG | 1 cut(s) | 206 |
| Bsh1236I | CGCG | 1 cut(s) | 95 |
| BshVI | ATCGAT | 1 cut(s) | 159 |
| BsiHKAI | GWGCWC | 1 cut(s) | 198 |
| BsiSI | CCGG | 1 cut(s) | 128 |
| BsmAI | GTCTC | 1 cut(s) | 82 |
| Bsp1286I | GDGCHC | 1 cut(s) | 198 |
| Bsp143I | GATC | 2 cut(s) | 156, 166 |
| BspACI | CCGC | 1 cut(s) | 95 |
| BspDI | ATCGAT | 1 cut(s) | 159 |
| BspFNI | CGCG | 1 cut(s) | 95 |
| BspHI | TCATGA | 1 cut(s) | 169 |
| BspPI | GGATC | 1 cut(s) | 174 |
| BspQI | GCTCTTC | 1 cut(s) | 203 |
| BsrI | ACTGG | 1 cut(s) | 192 |
| BssMI | GATC | 2 cut(s) | 156, 166 |
| Bst4CI | ACNGT | 1 cut(s) | 258 |
| Bst6I | CTCTTC | 1 cut(s) | 203 |
| BstDEI | CTNAG | 1 cut(s) | 21 |
| BstF5I | GGATG | 2 cut(s) | 35, 103 |
| BstFNI | CGCG | 1 cut(s) | 95 |
| BstKTI | GATC | 2 cut(s) | 159, 169 |
| BstMAI | GTCTC | 1 cut(s) | 82 |
| BstMBI | GATC | 2 cut(s) | 156, 166 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 11, 107 |
| BstUI | CGCG | 1 cut(s) | 95 |
| Bsu15I | ATCGAT | 1 cut(s) | 159 |
| BsuTUI | ATCGAT | 1 cut(s) | 159 |
| BtsCI | GGATG | 2 cut(s) | 35, 103 |
| BtsIMutI | CAGTG | 2 cut(s) | 80, 185 |
| CciI | TCATGA | 1 cut(s) | 169 |
| ClaI | ATCGAT | 1 cut(s) | 159 |
| CseI | GACGC | 1 cut(s) | 128 |
| CviAII | CATG | 1 cut(s) | 170 |
| CviJI | RGCY | 3 cut(s) | 5, 26, 196 |
| CviKI_1 | RGCY | 3 cut(s) | 5, 26, 196 |
| DdeI | CTNAG | 1 cut(s) | 21 |
| DpnI | GATC | 2 cut(s) | 158, 168 |
| DpnII | GATC | 2 cut(s) | 156, 166 |
| DraI | TTTAAA | 1 cut(s) | 46 |
| Eam1104I | CTCTTC | 1 cut(s) | 203 |
| EarI | CTCTTC | 1 cut(s) | 203 |
| Ecl136II | GAGCTC | 1 cut(s) | 196 |
| Eco24I | GRGCYC | 1 cut(s) | 198 |
| Eco53kI | GAGCTC | 1 cut(s) | 196 |
| EcoICRI | GAGCTC | 1 cut(s) | 196 |
| EcoT38I | GRGCYC | 1 cut(s) | 198 |
| FaeI | CATG | 1 cut(s) | 173 |
| FaiI | YATR | 3 cut(s) | 41, 164, 171 |
| FatI | CATG | 1 cut(s) | 169 |
| FokI | GGATG | 2 cut(s) | 42, 110 |
| FriOI | GRGCYC | 1 cut(s) | 198 |
| GsuI | CTGGAG | 1 cut(s) | 209 |
| HapII | CCGG | 1 cut(s) | 128 |
| HgaI | GACGC | 1 cut(s) | 128 |
| Hin1II | CATG | 1 cut(s) | 173 |
| HincII | GTYRAC | 1 cut(s) | 143 |
| HindII | GTYRAC | 1 cut(s) | 143 |
| HinfI | GANTC | 1 cut(s) | 177 |
| HpaII | CCGG | 1 cut(s) | 128 |
| HphI | GGTGA | 2 cut(s) | 77, 246 |
| Hpy166II | GTNNAC | 1 cut(s) | 143 |
| Hpy188III | TCNNGA | 2 cut(s) | 170, 244 |
| Hpy8I | GTNNAC | 1 cut(s) | 143 |
| HpyAV | CCTTC | 2 cut(s) | 214, 226 |
| HpyCH4III | ACNGT | 1 cut(s) | 258 |
| HpyCH4IV | ACGT | 1 cut(s) | 211 |
| HpyCH4V | TGCA | 1 cut(s) | 101 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 11, 107 |
| HpyF3I | CTNAG | 1 cut(s) | 21 |
| HpySE526I | ACGT | 1 cut(s) | 211 |
| Hsp92II | CATG | 1 cut(s) | 173 |
| Kzo9I | GATC | 2 cut(s) | 156, 166 |
| LguI | GCTCTTC | 1 cut(s) | 203 |
| LmnI | GCTCC | 1 cut(s) | 193 |
| LpnPI | CCDG | 4 cut(s) | 12, 141, 173, 234 |
| LweI | GCATC | 3 cut(s) | 7, 58, 88 |
| MaeII | ACGT | 1 cut(s) | 211 |
| MalI | GATC | 2 cut(s) | 158, 168 |
| MboI | GATC | 2 cut(s) | 156, 166 |
| MboII | GAAGA | 2 cut(s) | 114, 190 |
| MhlI | GDGCHC | 1 cut(s) | 198 |
| MmeI | TCCRAC | 1 cut(s) | 232 |
| MnlI | CCTC | 2 cut(s) | 124, 184 |
| MseI | TTAA | 3 cut(s) | 45, 105, 227 |
| MspI | CCGG | 1 cut(s) | 128 |
| MvnI | CGCG | 1 cut(s) | 95 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 11, 107 |
| NdeII | GATC | 2 cut(s) | 156, 166 |
| NlaIII | CATG | 1 cut(s) | 173 |
| NmeAIII | GCCGAG | 1 cut(s) | 93 |
| PagI | TCATGA | 1 cut(s) | 169 |
| PciSI | GCTCTTC | 1 cut(s) | 203 |
| PfeI | GAWTC | 1 cut(s) | 177 |
| Psp124BI | GAGCTC | 1 cut(s) | 198 |
| SacI | GAGCTC | 1 cut(s) | 198 |
| SapI | GCTCTTC | 1 cut(s) | 203 |
| SaqAI | TTAA | 3 cut(s) | 45, 105, 227 |
| Sau3AI | GATC | 2 cut(s) | 156, 166 |
| SduI | GDGCHC | 1 cut(s) | 198 |
| SetI | ASST | 2 cut(s) | 198, 214 |
| SfaNI | GCATC | 3 cut(s) | 7, 58, 88 |
| SsiI | CCGC | 1 cut(s) | 95 |
| SstI | GAGCTC | 1 cut(s) | 198 |
| TaaI | ACNGT | 1 cut(s) | 258 |
| TaiI | ACGT | 1 cut(s) | 214 |
| TaqI | TCGA | 1 cut(s) | 159 |
| TaqII | GACCGA | 1 cut(s) | 101 |
| TfiI | GAWTC | 1 cut(s) | 177 |
| Tru1I | TTAA | 3 cut(s) | 45, 105, 227 |
| Tru9I | TTAA | 3 cut(s) | 45, 105, 227 |
| TscAI | CASTG | 2 cut(s) | 87, 192 |
| TspDTI | ATGAA | 2 cut(s) | 169, 245 |
| TspRI | CASTG | 2 cut(s) | 87, 192 |