zinc-binding in reverse transcriptase
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 815 |
| Acc36I | ACCTGC | 1 cut(s) | 815 |
| AccB1I | GGYRCC | 1 cut(s) | 931 |
| AccBSI | CCGCTC | 1 cut(s) | 309 |
| AccI | GTMKAC | 2 cut(s) | 593, 763 |
| AccII | CGCG | 1 cut(s) | 1234 |
| AccIII | TCCGGA | 2 cut(s) | 1275, 1438 |
| AciI | CCGC | 6 cut(s) | 307, 1234, 1346, 1366, 1561, 1620 |
| AcoI | YGGCCR | 2 cut(s) | 577, 1226 |
| AcsI | RAATTY | 3 cut(s) | 154, 353, 863 |
| AcuI | CTGAAG | 1 cut(s) | 1374 |
| AcyI | GRCGYC | 3 cut(s) | 1564, 1602, 1623 |
| AfaI | GTAC | 2 cut(s) | 74, 88 |
| AgeI | ACCGGT | 3 cut(s) | 1261, 1303, 1324 |
| AgsI | TTSAA | 3 cut(s) | 341, 712, 740 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 589 |
| AjnI | CCWGG | 1 cut(s) | 579 |
| AluBI | AGCT | 5 cut(s) | 8, 448, 843, 1063, 1376 |
| AluI | AGCT | 5 cut(s) | 8, 448, 843, 1063, 1376 |
| Alw21I | GWGCWC | 4 cut(s) | 639, 657, 1426, 1496 |
| Alw26I | GTCTC | 4 cut(s) | 738, 853, 1114, 1242 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 317, 1537 |
| Ama87I | CYCGRG | 2 cut(s) | 251, 795 |
| Aor13HI | TCCGGA | 2 cut(s) | 1275, 1438 |
| AoxI | GGCC | 7 cut(s) | 407, 577, 1135, 1226, 1553, 1591, 1612 |
| ApeKI | GCWGC | 6 cut(s) | 160, 473, 1060, 1403, 1531, 1580 |
| ApoI | RAATTY | 3 cut(s) | 154, 353, 863 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 716, 748 |
| AseI | ATTAAT | 1 cut(s) | 1083 |
| AsiGI | ACCGGT | 3 cut(s) | 1261, 1303, 1324 |
| AspA2I | CCTAGG | 2 cut(s) | 1138, 1615 |
| AspLEI | GCGC | 1 cut(s) | 1234 |
| AspS9I | GGNCC | 4 cut(s) | 408, 1051, 1135, 1368 |
| AsuC2I | CCSGG | 1 cut(s) | 1474 |
| AsuHPI | GGTGA | 9 cut(s) | 40, 839, 847, 931, 1185, 1229, 1276, 1318, 1339 |
| AsuII | TTCGAA | 1 cut(s) | 364 |
| AvaI | CYCGRG | 2 cut(s) | 251, 795 |
| AvaII | GGWCC | 2 cut(s) | 1051, 1368 |
| AvrII | CCTAGG | 2 cut(s) | 1138, 1615 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 210, 243 |
| BalI | TGGCCA | 1 cut(s) | 579 |
| BanI | GGYRCC | 1 cut(s) | 931 |
| BbsI | GAAGAC | 1 cut(s) | 1380 |
| Bbv12I | GWGCWC | 4 cut(s) | 639, 657, 1426, 1496 |
| BbvCI | CCTCAGC | 1 cut(s) | 966 |
| BbvI | GCAGC | 6 cut(s) | 147, 485, 1072, 1390, 1543, 1592 |
| BccI | CCATC | 4 cut(s) | 185, 341, 425, 1039 |
| BceAI | ACGGC | 1 cut(s) | 1486 |
| BciT130I | CCWGG | 1 cut(s) | 581 |
| BciVI | GTATCC | 1 cut(s) | 688 |
| BcnI | CCSGG | 1 cut(s) | 1474 |
| BcoDI | GTCTC | 4 cut(s) | 738, 853, 1114, 1242 |
| BfaI | CTAG | 3 cut(s) | 701, 1139, 1616 |
| BfmI | CTRYAG | 2 cut(s) | 1529, 1578 |
| BfuAI | ACCTGC | 1 cut(s) | 815 |
| BfuI | GTATCC | 1 cut(s) | 688 |
| BglI | GCCNNNNNGGC | 3 cut(s) | 1561, 1599, 1620 |
| BglII | AGATCT | 2 cut(s) | 727, 1114 |
| BisI | GCNGC | 8 cut(s) | 161, 474, 1061, 1404, 1532, 1562, 1581, 1621 |
| BlnI | CCTAGG | 2 cut(s) | 1138, 1615 |
| BlsI | GCNGC | 8 cut(s) | 162, 475, 1062, 1405, 1533, 1563, 1582, 1622 |
| BmcAI | AGTACT | 2 cut(s) | 74, 88 |
| Bme1390I | CCNGG | 2 cut(s) | 581, 1474 |
| Bme18I | GGWCC | 2 cut(s) | 1051, 1368 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 589 |
| BmeT110I | CYCGRG | 2 cut(s) | 251, 795 |
| BmgT120I | GGNCC | 4 cut(s) | 408, 1051, 1135, 1368 |
| BmiI | GGNNCC | 1 cut(s) | 933 |
| BmrFI | CCNGG | 2 cut(s) | 581, 1474 |
| BmsI | GCATC | 2 cut(s) | 1390, 1543 |
| BpiI | GAAGAC | 1 cut(s) | 1380 |
| Bpu10I | CCTNAGC | 1 cut(s) | 966 |
| Bpu14I | TTCGAA | 1 cut(s) | 364 |
| BpuEI | CTTGAG | 2 cut(s) | 623, 878 |
| BpuMI | CCSGG | 1 cut(s) | 1474 |
| BsaHI | GRCGYC | 3 cut(s) | 1564, 1602, 1623 |
| BsaI | GGTCTC | 2 cut(s) | 853, 1242 |
| BsaJI | CCNNGG | 2 cut(s) | 1138, 1615 |
| BsaWI | WCCGGW | 9 cut(s) | 1261, 1268, 1275, 1289, 1303, 1310, 1324, 1331, 1438 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 484, 514, 900, 930, 1040, 1070 |
| Bse118I | RCCGGY | 5 cut(s) | 1021, 1228, 1261, 1303, 1324 |
| Bse1I | ACTGG | 2 cut(s) | 1054, 1222 |
| Bse3DI | GCAATG | 2 cut(s) | 276, 1150 |
| BseAI | TCCGGA | 2 cut(s) | 1275, 1438 |
| BseBI | CCWGG | 1 cut(s) | 581 |
| BseDI | CCNNGG | 2 cut(s) | 1138, 1615 |
| BseGI | GGATG | 2 cut(s) | 673, 1405 |
| BseMI | GCAATG | 2 cut(s) | 276, 1150 |
| BseMII | CTCAG | 5 cut(s) | 324, 902, 957, 1109, 1529 |
| BseNI | ACTGG | 2 cut(s) | 1054, 1222 |
| BseXI | GCAGC | 6 cut(s) | 147, 485, 1072, 1390, 1543, 1592 |
| BseYI | CCCAGC | 1 cut(s) | 1362 |
| Bsh1236I | CGCG | 1 cut(s) | 1234 |
| Bsh1285I | CGRYCG | 4 cut(s) | 1262, 1290, 1304, 1325 |
| BshFI | GGCC | 7 cut(s) | 409, 579, 1137, 1228, 1555, 1593, 1614 |
| BshNI | GGYRCC | 1 cut(s) | 931 |
| BshTI | ACCGGT | 3 cut(s) | 1261, 1303, 1324 |
| BsiEI | CGRYCG | 4 cut(s) | 1262, 1290, 1304, 1325 |
| BsiHKAI | GWGCWC | 4 cut(s) | 639, 657, 1426, 1496 |
| BsiHKCI | CYCGRG | 2 cut(s) | 251, 795 |
| BslFI | GGGAC | 4 cut(s) | 299, 541, 603, 626 |
| BsmAI | GTCTC | 4 cut(s) | 738, 853, 1114, 1242 |
| BsmFI | GGGAC | 4 cut(s) | 299, 541, 603, 626 |
| BsmI | GAATGC | 1 cut(s) | 103 |
| BsnI | GGCC | 7 cut(s) | 409, 579, 1137, 1228, 1555, 1593, 1614 |
| Bso31I | GGTCTC | 2 cut(s) | 853, 1242 |
| BsoBI | CYCGRG | 2 cut(s) | 251, 795 |
| Bsp119I | TTCGAA | 1 cut(s) | 364 |
| Bsp1286I | GDGCHC | 4 cut(s) | 639, 657, 1426, 1496 |
| Bsp13I | TCCGGA | 2 cut(s) | 1275, 1438 |
| Bsp143I | GATC | 4 cut(s) | 727, 1114, 1507, 1525 |
| BspACI | CCGC | 6 cut(s) | 307, 1234, 1346, 1366, 1561, 1620 |
| BspANI | GGCC | 7 cut(s) | 409, 579, 1137, 1228, 1555, 1593, 1614 |
| BspCNI | CTCAG | 5 cut(s) | 323, 901, 958, 1110, 1530 |
| BspEI | TCCGGA | 2 cut(s) | 1275, 1438 |
| BspFNI | CGCG | 1 cut(s) | 1234 |
| BspLI | GGNNCC | 1 cut(s) | 933 |
| BspMAI | CTGCAG | 2 cut(s) | 1533, 1582 |
| BspMI | ACCTGC | 1 cut(s) | 815 |
| BspT104I | TTCGAA | 1 cut(s) | 364 |
| BspT107I | GGYRCC | 1 cut(s) | 931 |
| BspTNI | GGTCTC | 2 cut(s) | 853, 1242 |
| BsrBI | CCGCTC | 1 cut(s) | 309 |
| BsrDI | GCAATG | 2 cut(s) | 276, 1150 |
| BsrFI | RCCGGY | 5 cut(s) | 1021, 1228, 1261, 1303, 1324 |
| BsrI | ACTGG | 2 cut(s) | 1054, 1222 |
| BssAI | RCCGGY | 5 cut(s) | 1021, 1228, 1261, 1303, 1324 |
| BssECI | CCNNGG | 2 cut(s) | 1138, 1615 |
| BssMI | GATC | 4 cut(s) | 727, 1114, 1507, 1525 |
| BssNI | GRCGYC | 3 cut(s) | 1564, 1602, 1623 |
| BssT1I | CCWWGG | 2 cut(s) | 1138, 1615 |
| Bst2UI | CCWGG | 1 cut(s) | 581 |
| Bst4CI | ACNGT | 5 cut(s) | 424, 617, 768, 1217, 1491 |
| Bst6I | CTCTTC | 2 cut(s) | 118, 741 |
| BstACI | GRCGYC | 3 cut(s) | 1564, 1602, 1623 |
| BstBI | TTCGAA | 1 cut(s) | 364 |
| BstC8I | GCNNGC | 4 cut(s) | 407, 975, 979, 1230 |
| BstDEI | CTNAG | 7 cut(s) | 69, 285, 310, 888, 966, 1118, 1538 |
| BstEII | GGTNACC | 5 cut(s) | 418, 1217, 1264, 1306, 1327 |
| BstF5I | GGATG | 2 cut(s) | 673, 1405 |
| BstFNI | CGCG | 1 cut(s) | 1234 |
| BstHHI | GCGC | 1 cut(s) | 1234 |
| BstKTI | GATC | 4 cut(s) | 730, 1117, 1510, 1528 |
| BstMAI | GTCTC | 4 cut(s) | 738, 853, 1114, 1242 |
| BstMBI | GATC | 4 cut(s) | 727, 1114, 1507, 1525 |
| BstMCI | CGRYCG | 4 cut(s) | 1262, 1290, 1304, 1325 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 1561, 1580, 1599, 1620 |
| BstNI | CCWGG | 1 cut(s) | 581 |
| BstNSI | RCATGY | 1 cut(s) | 965 |
| BstPI | GGTNACC | 5 cut(s) | 418, 1217, 1264, 1306, 1327 |
| BstSCI | CCNGG | 2 cut(s) | 579, 1472 |
| BstSFI | CTRYAG | 2 cut(s) | 1529, 1578 |
| BstUI | CGCG | 1 cut(s) | 1234 |
| BstV1I | GCAGC | 6 cut(s) | 147, 485, 1072, 1390, 1543, 1592 |
| BstV2I | GAAGAC | 1 cut(s) | 1380 |
| BstX2I | RGATCY | 2 cut(s) | 727, 1114 |
| BstYI | RGATCY | 2 cut(s) | 727, 1114 |
| BsuI | GTATCC | 1 cut(s) | 688 |
| BsuRI | GGCC | 7 cut(s) | 409, 579, 1137, 1228, 1555, 1593, 1614 |
| BtsCI | GGATG | 2 cut(s) | 673, 1405 |
| BtsI | GCAGTG | 1 cut(s) | 904 |
| BtsIMutI | CAGTG | 3 cut(s) | 904, 1061, 1229 |
| BveI | ACCTGC | 1 cut(s) | 815 |
| Cac8I | GCNNGC | 4 cut(s) | 407, 975, 979, 1230 |
| CaiI | CAGNNNCTG | 2 cut(s) | 317, 1537 |
| CfoI | GCGC | 1 cut(s) | 1234 |
| Cfr10I | RCCGGY | 5 cut(s) | 1021, 1228, 1261, 1303, 1324 |
| Cfr13I | GGNCC | 4 cut(s) | 408, 1051, 1135, 1368 |
| CseI | GACGC | 4 cut(s) | 1553, 1572, 1591, 1612 |
| Csp6I | GTAC | 2 cut(s) | 73, 87 |
| CspAI | ACCGGT | 3 cut(s) | 1261, 1303, 1324 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 628, 663 |
| CviAII | CATG | 5 cut(s) | 129, 962, 982, 1010, 1180 |
| CviQI | GTAC | 2 cut(s) | 73, 87 |
| DdeI | CTNAG | 7 cut(s) | 69, 285, 310, 888, 966, 1118, 1538 |
| DpnI | GATC | 4 cut(s) | 729, 1116, 1509, 1527 |
| DpnII | GATC | 4 cut(s) | 727, 1114, 1507, 1525 |
| DriI | GACNNNNNGTC | 1 cut(s) | 589 |
| EaeI | YGGCCR | 2 cut(s) | 577, 1226 |
| Eam1104I | CTCTTC | 2 cut(s) | 118, 741 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 589 |
| EarI | CTCTTC | 2 cut(s) | 118, 741 |
| EciI | GGCGGA | 1 cut(s) | 1335 |
| Eco130I | CCWWGG | 2 cut(s) | 1138, 1615 |
| Eco31I | GGTCTC | 2 cut(s) | 853, 1242 |
| Eco47I | GGWCC | 2 cut(s) | 1051, 1368 |
| Eco57I | CTGAAG | 1 cut(s) | 1374 |
| Eco88I | CYCGRG | 2 cut(s) | 251, 795 |
| Eco91I | GGTNACC | 5 cut(s) | 418, 1217, 1264, 1306, 1327 |
| EcoO109I | RGGNCCY | 2 cut(s) | 408, 1135 |
| EcoO65I | GGTNACC | 5 cut(s) | 418, 1217, 1264, 1306, 1327 |
| EcoRI | GAATTC | 1 cut(s) | 863 |
| EcoRII | CCWGG | 1 cut(s) | 579 |
| EcoT14I | CCWWGG | 2 cut(s) | 1138, 1615 |
| ErhI | CCWWGG | 2 cut(s) | 1138, 1615 |
| FaeI | CATG | 5 cut(s) | 132, 965, 985, 1013, 1183 |
| FaqI | GGGAC | 4 cut(s) | 299, 541, 603, 626 |
| FatI | CATG | 5 cut(s) | 128, 961, 981, 1009, 1179 |
| FauI | CCCGC | 1 cut(s) | 314 |
| FauNDI | CATATG | 1 cut(s) | 1039 |
| FblI | GTMKAC | 2 cut(s) | 593, 763 |
| Fnu4HI | GCNGC | 8 cut(s) | 161, 474, 1061, 1404, 1532, 1562, 1581, 1621 |
| FokI | GGATG | 2 cut(s) | 660, 1412 |
| Fsp4HI | GCNGC | 8 cut(s) | 161, 474, 1061, 1404, 1532, 1562, 1581, 1621 |
| FspBI | CTAG | 3 cut(s) | 701, 1139, 1616 |
| GlaI | GCGC | 1 cut(s) | 1233 |
| GluI | GCNGC | 8 cut(s) | 161, 474, 1061, 1404, 1532, 1562, 1581, 1621 |
| GsaI | CCCAGC | 1 cut(s) | 1366 |
| HaeIII | GGCC | 7 cut(s) | 409, 579, 1137, 1228, 1555, 1593, 1614 |
| HgaI | GACGC | 4 cut(s) | 1553, 1572, 1591, 1612 |
| HhaI | GCGC | 1 cut(s) | 1234 |
| Hin1I | GRCGYC | 3 cut(s) | 1564, 1602, 1623 |
| Hin1II | CATG | 5 cut(s) | 132, 965, 985, 1013, 1183 |
| Hin6I | GCGC | 1 cut(s) | 1232 |
| HinP1I | GCGC | 1 cut(s) | 1232 |
| HincII | GTYRAC | 1 cut(s) | 764 |
| HindII | GTYRAC | 1 cut(s) | 764 |
| HindIII | AAGCTT | 2 cut(s) | 446, 1374 |
| HphI | GGTGA | 9 cut(s) | 40, 839, 847, 931, 1185, 1229, 1276, 1318, 1339 |
| Hpy166II | GTNNAC | 2 cut(s) | 594, 764 |
| Hpy188I | TCNGA | 7 cut(s) | 217, 869, 891, 1119, 1507, 1539, 1631 |
| Hpy188III | TCNNGA | 8 cut(s) | 94, 692, 740, 852, 1276, 1339, 1392, 1439 |
| Hpy8I | GTNNAC | 2 cut(s) | 594, 764 |
| Hpy99I | CGWCG | 6 cut(s) | 1288, 1431, 1501, 1569, 1588, 1628 |
| HpyAV | CCTTC | 6 cut(s) | 48, 129, 161, 525, 1206, 1559 |
| HpyCH4III | ACNGT | 5 cut(s) | 424, 617, 768, 1217, 1491 |
| HpyCH4V | TGCA | 8 cut(s) | 163, 473, 601, 722, 981, 1480, 1531, 1580 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 1561, 1580, 1599, 1620 |
| HpyF3I | CTNAG | 7 cut(s) | 69, 285, 310, 888, 966, 1118, 1538 |
| Hsp92I | GRCGYC | 3 cut(s) | 1564, 1602, 1623 |
| Hsp92II | CATG | 5 cut(s) | 132, 965, 985, 1013, 1183 |
| HspAI | GCGC | 1 cut(s) | 1232 |
| Kpn2I | TCCGGA | 2 cut(s) | 1275, 1438 |
| KroI | GCCGGC | 1 cut(s) | 1228 |
| KroNI | GCCGGC | 1 cut(s) | 1230 |
| Kzo9I | GATC | 4 cut(s) | 727, 1114, 1507, 1525 |
| LmnI | GCTCC | 1 cut(s) | 660 |
| Lsp1109I | GCAGC | 6 cut(s) | 147, 485, 1072, 1390, 1543, 1592 |
| LweI | GCATC | 2 cut(s) | 1390, 1543 |
| MaeI | CTAG | 3 cut(s) | 701, 1139, 1616 |
| MaeIII | GTNAC | 8 cut(s) | 280, 418, 500, 1191, 1217, 1264, 1306, 1327 |
| MalI | GATC | 4 cut(s) | 729, 1116, 1509, 1527 |
| MbiI | CCGCTC | 1 cut(s) | 309 |
| MboI | GATC | 4 cut(s) | 727, 1114, 1507, 1525 |
| MboII | GAAGA | 6 cut(s) | 105, 454, 490, 728, 1124, 1380 |
| MfeI | CAATTG | 2 cut(s) | 939, 1417 |
| MflI | RGATCY | 2 cut(s) | 727, 1114 |
| MhlI | GDGCHC | 4 cut(s) | 639, 657, 1426, 1496 |
| MlsI | TGGCCA | 1 cut(s) | 579 |
| MluCI | AATT | 5 cut(s) | 154, 353, 863, 939, 1417 |
| MluNI | TGGCCA | 1 cut(s) | 579 |
| MlyI | GAGTC | 6 cut(s) | 504, 563, 599, 1245, 1266, 1308 |
| MmeI | TCCRAC | 1 cut(s) | 531 |
| Mox20I | TGGCCA | 1 cut(s) | 579 |
| MroI | TCCGGA | 2 cut(s) | 1275, 1438 |
| MroNI | GCCGGC | 1 cut(s) | 1228 |
| MscI | TGGCCA | 1 cut(s) | 579 |
| MseI | TTAA | 2 cut(s) | 687, 1083 |
| Msp20I | TGGCCA | 1 cut(s) | 579 |
| MspA1I | CMGCKG | 1 cut(s) | 1366 |
| MspR9I | CCNGG | 2 cut(s) | 581, 1474 |
| MunI | CAATTG | 2 cut(s) | 939, 1417 |
| Mva1269I | GAATGC | 1 cut(s) | 103 |
| MvaI | CCWGG | 1 cut(s) | 581 |
| MvnI | CGCG | 1 cut(s) | 1234 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 1561, 1580, 1599, 1620 |
| NaeI | GCCGGC | 1 cut(s) | 1230 |
| NciI | CCSGG | 1 cut(s) | 1474 |
| NdeI | CATATG | 1 cut(s) | 1039 |
| NdeII | GATC | 4 cut(s) | 727, 1114, 1507, 1525 |
| NgoMIV | GCCGGC | 1 cut(s) | 1228 |
| NlaIII | CATG | 5 cut(s) | 132, 965, 985, 1013, 1183 |
| NlaIV | GGNNCC | 1 cut(s) | 933 |
| NmuCI | GTSAC | 6 cut(s) | 500, 1191, 1217, 1264, 1306, 1327 |
| NspI | RCATGY | 1 cut(s) | 965 |
| NspV | TTCGAA | 1 cut(s) | 364 |
| PaqCI | CACCTGC | 1 cut(s) | 815 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 1459, 1521 |
| PctI | GAATGC | 1 cut(s) | 103 |
| PdiI | GCCGGC | 1 cut(s) | 1230 |
| PfeI | GAWTC | 5 cut(s) | 463, 1293, 1335, 1342, 1435 |
| PinAI | ACCGGT | 3 cut(s) | 1261, 1303, 1324 |
| PkrI | GCNGC | 8 cut(s) | 162, 475, 1062, 1405, 1533, 1563, 1582, 1622 |
| PleI | GAGTC | 6 cut(s) | 503, 562, 598, 1245, 1266, 1308 |
| PpsI | GAGTC | 6 cut(s) | 503, 562, 598, 1245, 1266, 1308 |
| PshBI | ATTAAT | 1 cut(s) | 1083 |
| Psp6I | CCWGG | 1 cut(s) | 579 |
| PspEI | GGTNACC | 5 cut(s) | 418, 1217, 1264, 1306, 1327 |
| PspFI | CCCAGC | 1 cut(s) | 1362 |
| PspGI | CCWGG | 1 cut(s) | 579 |
| PspN4I | GGNNCC | 1 cut(s) | 933 |
| PspPI | GGNCC | 4 cut(s) | 408, 1051, 1135, 1368 |
| PstI | CTGCAG | 2 cut(s) | 1533, 1582 |
| PstNI | CAGNNNCTG | 2 cut(s) | 317, 1537 |
| PsuI | RGATCY | 2 cut(s) | 727, 1114 |
| RsaI | GTAC | 2 cut(s) | 74, 88 |
| RsaNI | GTAC | 2 cut(s) | 73, 87 |
| SalI | GTCGAC | 1 cut(s) | 762 |
| SaqAI | TTAA | 2 cut(s) | 687, 1083 |
| SatI | GCNGC | 8 cut(s) | 161, 474, 1061, 1404, 1532, 1562, 1581, 1621 |
| Sau3AI | GATC | 4 cut(s) | 727, 1114, 1507, 1525 |
| Sau96I | GGNCC | 4 cut(s) | 408, 1051, 1135, 1368 |
| ScaI | AGTACT | 2 cut(s) | 74, 88 |
| SchI | GAGTC | 6 cut(s) | 504, 563, 599, 1245, 1266, 1308 |
| ScrFI | CCNGG | 2 cut(s) | 581, 1474 |
| SduI | GDGCHC | 4 cut(s) | 639, 657, 1426, 1496 |
| SfaNI | GCATC | 2 cut(s) | 1390, 1543 |
| SfcI | CTRYAG | 2 cut(s) | 1529, 1578 |
| SfuI | TTCGAA | 1 cut(s) | 364 |
| SinI | GGWCC | 2 cut(s) | 1051, 1368 |
| SmlI | CTYRAG | 2 cut(s) | 638, 857 |
| SmoI | CTYRAG | 2 cut(s) | 638, 857 |
| Sse9I | AATT | 5 cut(s) | 154, 353, 863, 939, 1417 |
| SsiI | CCGC | 6 cut(s) | 307, 1234, 1346, 1366, 1561, 1620 |
| SspI | AATATT | 1 cut(s) | 208 |
| SspMI | CTAG | 3 cut(s) | 701, 1139, 1616 |
| StyD4I | CCNGG | 2 cut(s) | 579, 1472 |
| StyI | CCWWGG | 2 cut(s) | 1138, 1615 |
| TaaI | ACNGT | 5 cut(s) | 424, 617, 768, 1217, 1491 |
| TaqI | TCGA | 7 cut(s) | 364, 763, 853, 881, 1462, 1515, 1524 |
| TaqII | GACCGA | 1 cut(s) | 835 |
| TasI | AATT | 5 cut(s) | 154, 353, 863, 939, 1417 |
| TatI | WGTACW | 2 cut(s) | 72, 86 |
| TauI | GCSGC | 2 cut(s) | 1564, 1623 |
| TfiI | GAWTC | 5 cut(s) | 463, 1293, 1335, 1342, 1435 |
| Tru1I | TTAA | 2 cut(s) | 687, 1083 |
| Tru9I | TTAA | 2 cut(s) | 687, 1083 |
| TscAI | CASTG | 3 cut(s) | 904, 1061, 1229 |
| TseFI | GTSAC | 6 cut(s) | 500, 1191, 1217, 1264, 1306, 1327 |
| TseI | GCWGC | 6 cut(s) | 160, 473, 1060, 1403, 1531, 1580 |
| Tsp45I | GTSAC | 6 cut(s) | 500, 1191, 1217, 1264, 1306, 1327 |
| TspDTI | ATGAA | 6 cut(s) | 30, 117, 162, 662, 803, 1125 |
| TspGWI | ACGGA | 1 cut(s) | 647 |
| TspRI | CASTG | 3 cut(s) | 904, 1061, 1229 |
| VpaK11BI | GGWCC | 2 cut(s) | 1051, 1368 |
| VspI | ATTAAT | 1 cut(s) | 1083 |
| XapI | RAATTY | 3 cut(s) | 154, 353, 863 |
| XceI | RCATGY | 1 cut(s) | 965 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1061 |
| XmaJI | CCTAGG | 2 cut(s) | 1138, 1615 |
| XmiI | GTMKAC | 2 cut(s) | 593, 763 |
| XspI | CTAG | 3 cut(s) | 701, 1139, 1616 |
| ZrmI | AGTACT | 2 cut(s) | 74, 88 |