Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 594 |
| AclWI | GGATC | 1 cut(s) | 118 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 250 |
| AgsI | TTSAA | 3 cut(s) | 134, 178, 493 |
| AjiI | CACGTC | 1 cut(s) | 92 |
| AluBI | AGCT | 4 cut(s) | 83, 137, 146, 441 |
| AluI | AGCT | 4 cut(s) | 83, 137, 146, 441 |
| Alw26I | GTCTC | 1 cut(s) | 188 |
| AlwI | GGATC | 1 cut(s) | 118 |
| Aor13HI | TCCGGA | 1 cut(s) | 594 |
| AoxI | GGCC | 1 cut(s) | 343 |
| ApeKI | GCWGC | 1 cut(s) | 80 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 440 |
| AspLEI | GCGC | 1 cut(s) | 470 |
| AspS9I | GGNCC | 1 cut(s) | 241 |
| AsuHPI | GGTGA | 3 cut(s) | 92, 365, 496 |
| AvaII | GGWCC | 1 cut(s) | 241 |
| BbsI | GAAGAC | 1 cut(s) | 324 |
| BbvI | GCAGC | 1 cut(s) | 92 |
| BccI | CCATC | 1 cut(s) | 229 |
| BcoDI | GTCTC | 1 cut(s) | 188 |
| BfaI | CTAG | 1 cut(s) | 77 |
| BfoI | RGCGCY | 1 cut(s) | 471 |
| BisI | GCNGC | 1 cut(s) | 81 |
| BlsI | GCNGC | 1 cut(s) | 82 |
| Bme18I | GGWCC | 1 cut(s) | 241 |
| BmgBI | CACGTC | 1 cut(s) | 92 |
| BmgT120I | GGNCC | 1 cut(s) | 241 |
| BmsI | GCATC | 1 cut(s) | 549 |
| BpiI | GAAGAC | 1 cut(s) | 324 |
| BpmI | CTGGAG | 1 cut(s) | 553 |
| BpuEI | CTTGAG | 1 cut(s) | 247 |
| BsaJI | CCNNGG | 1 cut(s) | 169 |
| BsaWI | WCCGGW | 2 cut(s) | 350, 594 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 250 |
| Bse1I | ACTGG | 1 cut(s) | 469 |
| Bse3DI | GCAATG | 1 cut(s) | 213 |
| BseAI | TCCGGA | 1 cut(s) | 594 |
| BseDI | CCNNGG | 1 cut(s) | 169 |
| BseGI | GGATG | 1 cut(s) | 591 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 250 |
| BseMI | GCAATG | 1 cut(s) | 213 |
| BseNI | ACTGG | 1 cut(s) | 469 |
| BseXI | GCAGC | 1 cut(s) | 92 |
| BseYI | CCCAGC | 1 cut(s) | 146 |
| BshFI | GGCC | 1 cut(s) | 345 |
| BsiSI | CCGG | 2 cut(s) | 351, 595 |
| BslFI | GGGAC | 1 cut(s) | 78 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 250 |
| BsmAI | GTCTC | 1 cut(s) | 188 |
| BsmFI | GGGAC | 1 cut(s) | 78 |
| BsmI | GAATGC | 1 cut(s) | 75 |
| BsnI | GGCC | 1 cut(s) | 345 |
| Bsp13I | TCCGGA | 1 cut(s) | 594 |
| Bsp143I | GATC | 2 cut(s) | 3, 110 |
| BspANI | GGCC | 1 cut(s) | 345 |
| BspEI | TCCGGA | 1 cut(s) | 594 |
| BspPI | GGATC | 1 cut(s) | 118 |
| BsrDI | GCAATG | 1 cut(s) | 213 |
| BsrI | ACTGG | 1 cut(s) | 469 |
| BssECI | CCNNGG | 1 cut(s) | 169 |
| BssMI | GATC | 2 cut(s) | 3, 110 |
| BssT1I | CCWWGG | 1 cut(s) | 169 |
| Bst4CI | ACNGT | 1 cut(s) | 323 |
| Bst6I | CTCTTC | 2 cut(s) | 264, 286 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 86, 510 |
| BstEII | GGTNACC | 1 cut(s) | 484 |
| BstF5I | GGATG | 1 cut(s) | 591 |
| BstH2I | RGCGCY | 1 cut(s) | 471 |
| BstHHI | GCGC | 1 cut(s) | 470 |
| BstKTI | GATC | 2 cut(s) | 6, 113 |
| BstMAI | GTCTC | 1 cut(s) | 188 |
| BstMBI | GATC | 2 cut(s) | 3, 110 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 86, 143, 510 |
| BstPI | GGTNACC | 1 cut(s) | 484 |
| BstV1I | GCAGC | 1 cut(s) | 92 |
| BstV2I | GAAGAC | 1 cut(s) | 324 |
| BsuRI | GGCC | 1 cut(s) | 345 |
| BtrI | CACGTC | 1 cut(s) | 92 |
| BtsCI | GGATG | 1 cut(s) | 591 |
| BtsIMutI | CAGTG | 2 cut(s) | 120, 462 |
| CfoI | GCGC | 1 cut(s) | 470 |
| Cfr13I | GGNCC | 1 cut(s) | 241 |
| CseI | GACGC | 1 cut(s) | 62 |
| CviAII | CATG | 4 cut(s) | 31, 104, 329, 514 |
| CviJI | RGCY | 8 cut(s) | 47, 83, 137, 146, 151, 345, 441, 519 |
| CviKI_1 | RGCY | 8 cut(s) | 47, 83, 137, 146, 151, 345, 441, 519 |
| DpnI | GATC | 2 cut(s) | 5, 112 |
| DpnII | GATC | 2 cut(s) | 3, 110 |
| Eam1104I | CTCTTC | 2 cut(s) | 264, 286 |
| EarI | CTCTTC | 2 cut(s) | 264, 286 |
| Eco130I | CCWWGG | 1 cut(s) | 169 |
| Eco32I | GATATC | 1 cut(s) | 25 |
| Eco47I | GGWCC | 1 cut(s) | 241 |
| Eco91I | GGTNACC | 1 cut(s) | 484 |
| EcoO65I | GGTNACC | 1 cut(s) | 484 |
| EcoRV | GATATC | 1 cut(s) | 25 |
| EcoT14I | CCWWGG | 1 cut(s) | 169 |
| ErhI | CCWWGG | 1 cut(s) | 169 |
| FaeI | CATG | 4 cut(s) | 34, 107, 332, 517 |
| FaiI | YATR | 9 cut(s) | 32, 41, 105, 140, 330, 500, 515, 537, 578 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 425, 457 |
| FaqI | GGGAC | 1 cut(s) | 78 |
| FatI | CATG | 4 cut(s) | 30, 103, 328, 513 |
| Fnu4HI | GCNGC | 1 cut(s) | 81 |
| FokI | GGATG | 1 cut(s) | 578 |
| Fsp4HI | GCNGC | 1 cut(s) | 81 |
| FspBI | CTAG | 1 cut(s) | 77 |
| GlaI | GCGC | 1 cut(s) | 469 |
| GluI | GCNGC | 1 cut(s) | 81 |
| GsaI | CCCAGC | 1 cut(s) | 150 |
| GsuI | CTGGAG | 1 cut(s) | 553 |
| HaeII | RGCGCY | 1 cut(s) | 471 |
| HaeIII | GGCC | 1 cut(s) | 345 |
| HapII | CCGG | 2 cut(s) | 351, 595 |
| HgaI | GACGC | 1 cut(s) | 62 |
| HhaI | GCGC | 1 cut(s) | 470 |
| Hin1II | CATG | 4 cut(s) | 34, 107, 332, 517 |
| Hin6I | GCGC | 1 cut(s) | 468 |
| HinP1I | GCGC | 1 cut(s) | 468 |
| HindIII | AAGCTT | 1 cut(s) | 439 |
| HinfI | GANTC | 1 cut(s) | 573 |
| HpaII | CCGG | 2 cut(s) | 351, 595 |
| HphI | GGTGA | 3 cut(s) | 92, 365, 496 |
| Hpy188I | TCNGA | 3 cut(s) | 250, 269, 558 |
| Hpy188III | TCNNGA | 3 cut(s) | 226, 570, 595 |
| HpyAV | CCTTC | 1 cut(s) | 499 |
| HpyCH4III | ACNGT | 1 cut(s) | 323 |
| HpyCH4IV | ACGT | 1 cut(s) | 91 |
| HpyCH4V | TGCA | 5 cut(s) | 89, 121, 206, 476, 513 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 86, 143, 510 |
| HpySE526I | ACGT | 1 cut(s) | 91 |
| Hsp92II | CATG | 4 cut(s) | 34, 107, 332, 517 |
| HspAI | GCGC | 1 cut(s) | 468 |
| Kpn2I | TCCGGA | 1 cut(s) | 594 |
| Kzo9I | GATC | 2 cut(s) | 3, 110 |
| LmnI | GCTCC | 1 cut(s) | 409 |
| LpnPI | CCDG | 4 cut(s) | 132, 364, 450, 583 |
| Lsp1109I | GCAGC | 1 cut(s) | 92 |
| LweI | GCATC | 1 cut(s) | 549 |
| MaeI | CTAG | 1 cut(s) | 77 |
| MaeII | ACGT | 1 cut(s) | 91 |
| MaeIII | GTNAC | 4 cut(s) | 7, 214, 460, 484 |
| MalI | GATC | 2 cut(s) | 5, 112 |
| MboI | GATC | 2 cut(s) | 3, 110 |
| MlyI | GAGTC | 1 cut(s) | 582 |
| MmeI | TCCRAC | 1 cut(s) | 88 |
| MroI | TCCGGA | 1 cut(s) | 594 |
| MroXI | GAANNNNTTC | 1 cut(s) | 440 |
| MseI | TTAA | 1 cut(s) | 601 |
| MslI | CAYNNNNRTG | 1 cut(s) | 527 |
| MspI | CCGG | 2 cut(s) | 351, 595 |
| Mva1269I | GAATGC | 1 cut(s) | 75 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 86, 143, 510 |
| NdeII | GATC | 2 cut(s) | 3, 110 |
| NlaIII | CATG | 4 cut(s) | 34, 107, 332, 517 |
| NmuCI | GTSAC | 3 cut(s) | 7, 460, 484 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 12 |
| PctI | GAATGC | 1 cut(s) | 75 |
| PdmI | GAANNNNTTC | 1 cut(s) | 440 |
| PkrI | GCNGC | 1 cut(s) | 82 |
| PleI | GAGTC | 1 cut(s) | 581 |
| PpsI | GAGTC | 1 cut(s) | 581 |
| PspEI | GGTNACC | 1 cut(s) | 484 |
| PspFI | CCCAGC | 1 cut(s) | 146 |
| PspPI | GGNCC | 1 cut(s) | 241 |
| RseI | CAYNNNNRTG | 1 cut(s) | 527 |
| SaqAI | TTAA | 1 cut(s) | 601 |
| SatI | GCNGC | 1 cut(s) | 81 |
| Sau3AI | GATC | 2 cut(s) | 3, 110 |
| Sau96I | GGNCC | 1 cut(s) | 241 |
| SchI | GAGTC | 1 cut(s) | 582 |
| SetI | ASST | 9 cut(s) | 85, 94, 139, 148, 175, 255, 443, 458, 491 |
| SfaNI | GCATC | 1 cut(s) | 549 |
| SinI | GGWCC | 1 cut(s) | 241 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 527 |
| SmlI | CTYRAG | 1 cut(s) | 226 |
| SmoI | CTYRAG | 1 cut(s) | 226 |
| SspMI | CTAG | 1 cut(s) | 77 |
| StyI | CCWWGG | 1 cut(s) | 169 |
| TaaI | ACNGT | 1 cut(s) | 323 |
| TaiI | ACGT | 1 cut(s) | 94 |
| TaqI | TCGA | 1 cut(s) | 27 |
| Tru1I | TTAA | 1 cut(s) | 601 |
| Tru9I | TTAA | 1 cut(s) | 601 |
| TscAI | CASTG | 2 cut(s) | 120, 469 |
| TseFI | GTSAC | 3 cut(s) | 7, 460, 484 |
| TseI | GCWGC | 1 cut(s) | 80 |
| Tsp45I | GTSAC | 3 cut(s) | 7, 460, 484 |
| TspDTI | ATGAA | 3 cut(s) | 75, 384, 511 |
| TspGWI | ACGGA | 1 cut(s) | 434 |
| TspRI | CASTG | 2 cut(s) | 120, 469 |
| VpaK11BI | GGWCC | 1 cut(s) | 241 |
| XmnI | GAANNNNTTC | 1 cut(s) | 440 |
| XspI | CTAG | 1 cut(s) | 77 |