Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 493 |
| AccIII | TCCGGA | 1 cut(s) | 658 |
| AciI | CCGC | 2 cut(s) | 405, 1023 |
| AcoI | YGGCCR | 1 cut(s) | 126 |
| AcsI | RAATTY | 2 cut(s) | 537, 781 |
| AcuI | CTGAAG | 1 cut(s) | 572 |
| AfaI | GTAC | 4 cut(s) | 298, 805, 862, 1013 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 433, 873, 923 |
| AgsI | TTSAA | 3 cut(s) | 236, 819, 1007 |
| AhlI | ACTAGT | 1 cut(s) | 857 |
| AjnI | CCWGG | 1 cut(s) | 532 |
| AluBI | AGCT | 5 cut(s) | 170, 206, 386, 460, 1032 |
| AluI | AGCT | 5 cut(s) | 170, 206, 386, 460, 1032 |
| Alw26I | GTCTC | 1 cut(s) | 26 |
| Aor13HI | TCCGGA | 1 cut(s) | 658 |
| AoxI | GGCC | 4 cut(s) | 64, 82, 126, 797 |
| ApeKI | GCWGC | 1 cut(s) | 962 |
| ApoI | RAATTY | 2 cut(s) | 537, 781 |
| AspS9I | GGNCC | 1 cut(s) | 520 |
| AsuHPI | GGTGA | 1 cut(s) | 865 |
| AvaII | GGWCC | 1 cut(s) | 520 |
| BalI | TGGCCA | 1 cut(s) | 128 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 787, 819 |
| BauI | CACGAG | 1 cut(s) | 50 |
| BbvI | GCAGC | 1 cut(s) | 949 |
| BccI | CCATC | 3 cut(s) | 488, 731, 941 |
| BciT130I | CCWGG | 1 cut(s) | 534 |
| BclI | TGATCA | 1 cut(s) | 610 |
| BcoDI | GTCTC | 1 cut(s) | 26 |
| BcuI | ACTAGT | 1 cut(s) | 857 |
| BfaI | CTAG | 9 cut(s) | 18, 62, 383, 554, 696, 792, 801, 858, 894 |
| BfuAI | ACCTGC | 1 cut(s) | 493 |
| BglII | AGATCT | 1 cut(s) | 890 |
| BisI | GCNGC | 2 cut(s) | 963, 1024 |
| BlsI | GCNGC | 2 cut(s) | 964, 1025 |
| BmcAI | AGTACT | 2 cut(s) | 805, 862 |
| Bme1390I | CCNGG | 1 cut(s) | 534 |
| Bme18I | GGWCC | 1 cut(s) | 520 |
| BmgT120I | GGNCC | 1 cut(s) | 520 |
| BmiI | GGNNCC | 3 cut(s) | 409, 522, 531 |
| BmrFI | CCNGG | 1 cut(s) | 534 |
| BmsI | GCATC | 2 cut(s) | 325, 918 |
| BpuEI | CTTGAG | 1 cut(s) | 186 |
| BsaAI | YACGTR | 1 cut(s) | 216 |
| BsaJI | CCNNGG | 2 cut(s) | 524, 867 |
| BsaWI | WCCGGW | 1 cut(s) | 658 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 433, 873, 923 |
| BseAI | TCCGGA | 1 cut(s) | 658 |
| BseBI | CCWGG | 1 cut(s) | 534 |
| BseDI | CCNNGG | 2 cut(s) | 524, 867 |
| BseGI | GGATG | 3 cut(s) | 340, 499, 933 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 433, 873, 923 |
| BseMII | CTCAG | 1 cut(s) | 378 |
| BseRI | GAGGAG | 2 cut(s) | 452, 909 |
| BseXI | GCAGC | 1 cut(s) | 949 |
| BshFI | GGCC | 4 cut(s) | 66, 84, 128, 799 |
| BsiSI | CCGG | 2 cut(s) | 85, 659 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 433, 873, 923 |
| BsmAI | GTCTC | 1 cut(s) | 26 |
| BsmI | GAATGC | 1 cut(s) | 442 |
| BsnI | GGCC | 4 cut(s) | 66, 84, 128, 799 |
| Bsp13I | TCCGGA | 1 cut(s) | 658 |
| Bsp143I | GATC | 2 cut(s) | 610, 890 |
| Bsp19I | CCATGG | 1 cut(s) | 524 |
| BspACI | CCGC | 2 cut(s) | 405, 1023 |
| BspANI | GGCC | 4 cut(s) | 66, 84, 128, 799 |
| BspCNI | CTCAG | 1 cut(s) | 379 |
| BspEI | TCCGGA | 1 cut(s) | 658 |
| BspLI | GGNNCC | 3 cut(s) | 409, 522, 531 |
| BspMI | ACCTGC | 1 cut(s) | 493 |
| BssECI | CCNNGG | 2 cut(s) | 524, 867 |
| BssMI | GATC | 2 cut(s) | 610, 890 |
| BssSI | CACGAG | 1 cut(s) | 50 |
| BssT1I | CCWWGG | 2 cut(s) | 524, 867 |
| Bst2BI | CACGAG | 1 cut(s) | 50 |
| Bst2UI | CCWGG | 1 cut(s) | 534 |
| Bst4CI | ACNGT | 1 cut(s) | 808 |
| Bst6I | CTCTTC | 1 cut(s) | 591 |
| BstBAI | YACGTR | 1 cut(s) | 216 |
| BstDEI | CTNAG | 4 cut(s) | 25, 301, 387, 677 |
| BstDSI | CCRYGG | 1 cut(s) | 524 |
| BstF5I | GGATG | 3 cut(s) | 340, 499, 933 |
| BstKTI | GATC | 2 cut(s) | 613, 893 |
| BstMAI | GTCTC | 1 cut(s) | 26 |
| BstMBI | GATC | 2 cut(s) | 610, 890 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1029 |
| BstNI | CCWGG | 1 cut(s) | 534 |
| BstSCI | CCNGG | 1 cut(s) | 532 |
| BstSNI | TACGTA | 1 cut(s) | 216 |
| BstV1I | GCAGC | 1 cut(s) | 949 |
| BstX2I | RGATCY | 1 cut(s) | 890 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 136 |
| BstYI | RGATCY | 1 cut(s) | 890 |
| BsuRI | GGCC | 4 cut(s) | 66, 84, 128, 799 |
| BtgI | CCRYGG | 1 cut(s) | 524 |
| BtgZI | GCGATG | 2 cut(s) | 236, 750 |
| BtsCI | GGATG | 3 cut(s) | 340, 499, 933 |
| BveI | ACCTGC | 1 cut(s) | 493 |
| Cfr13I | GGNCC | 1 cut(s) | 520 |
| Csp6I | GTAC | 4 cut(s) | 297, 804, 861, 1012 |
| CviAII | CATG | 4 cut(s) | 414, 433, 525, 959 |
| CviQI | GTAC | 4 cut(s) | 297, 804, 861, 1012 |
| DdeI | CTNAG | 4 cut(s) | 25, 301, 387, 677 |
| DpnI | GATC | 2 cut(s) | 612, 892 |
| DpnII | GATC | 2 cut(s) | 610, 890 |
| EaeI | YGGCCR | 1 cut(s) | 126 |
| Eam1104I | CTCTTC | 1 cut(s) | 591 |
| EarI | CTCTTC | 1 cut(s) | 591 |
| Eco105I | TACGTA | 1 cut(s) | 216 |
| Eco130I | CCWWGG | 2 cut(s) | 524, 867 |
| Eco147I | AGGCCT | 2 cut(s) | 66, 799 |
| Eco32I | GATATC | 1 cut(s) | 465 |
| Eco47I | GGWCC | 1 cut(s) | 520 |
| Eco57I | CTGAAG | 1 cut(s) | 572 |
| EcoRI | GAATTC | 2 cut(s) | 537, 781 |
| EcoRII | CCWGG | 1 cut(s) | 532 |
| EcoRV | GATATC | 1 cut(s) | 465 |
| EcoT14I | CCWWGG | 2 cut(s) | 524, 867 |
| ErhI | CCWWGG | 2 cut(s) | 524, 867 |
| FaeI | CATG | 4 cut(s) | 417, 436, 528, 962 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 670, 702 |
| FatI | CATG | 4 cut(s) | 413, 432, 524, 958 |
| FbaI | TGATCA | 1 cut(s) | 610 |
| Fnu4HI | GCNGC | 2 cut(s) | 963, 1024 |
| FokI | GGATG | 3 cut(s) | 347, 506, 940 |
| Fsp4HI | GCNGC | 2 cut(s) | 963, 1024 |
| FspBI | CTAG | 9 cut(s) | 18, 62, 383, 554, 696, 792, 801, 858, 894 |
| GluI | GCNGC | 2 cut(s) | 963, 1024 |
| HaeIII | GGCC | 4 cut(s) | 66, 84, 128, 799 |
| HapII | CCGG | 2 cut(s) | 85, 659 |
| Hin1II | CATG | 4 cut(s) | 417, 436, 528, 962 |
| HindIII | AAGCTT | 1 cut(s) | 204 |
| HinfI | GANTC | 3 cut(s) | 44, 316, 379 |
| HpaII | CCGG | 2 cut(s) | 85, 659 |
| HphI | GGTGA | 1 cut(s) | 865 |
| Hpy188I | TCNGA | 4 cut(s) | 72, 378, 888, 1045 |
| Hpy188III | TCNNGA | 7 cut(s) | 184, 449, 608, 659, 792, 894, 998 |
| HpyAV | CCTTC | 7 cut(s) | 77, 353, 725, 789, 798, 838, 1001 |
| HpyCH4III | ACNGT | 1 cut(s) | 808 |
| HpyCH4IV | ACGT | 1 cut(s) | 215 |
| HpyCH4V | TGCA | 5 cut(s) | 4, 278, 345, 599, 965 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1029 |
| HpyF3I | CTNAG | 4 cut(s) | 25, 301, 387, 677 |
| HpySE526I | ACGT | 1 cut(s) | 215 |
| Hsp92II | CATG | 4 cut(s) | 417, 436, 528, 962 |
| Kpn2I | TCCGGA | 1 cut(s) | 658 |
| Ksp22I | TGATCA | 1 cut(s) | 610 |
| Kzo9I | GATC | 2 cut(s) | 610, 890 |
| LmnI | GCTCC | 4 cut(s) | 167, 439, 457, 1029 |
| Lsp1109I | GCAGC | 1 cut(s) | 949 |
| LweI | GCATC | 2 cut(s) | 325, 918 |
| MaeI | CTAG | 9 cut(s) | 18, 62, 383, 554, 696, 792, 801, 858, 894 |
| MaeII | ACGT | 1 cut(s) | 215 |
| MaeIII | GTNAC | 3 cut(s) | 767, 853, 998 |
| MalI | GATC | 2 cut(s) | 612, 892 |
| MboI | GATC | 2 cut(s) | 610, 890 |
| MboII | GAAGA | 4 cut(s) | 325, 368, 578, 641 |
| MflI | RGATCY | 1 cut(s) | 890 |
| MlsI | TGGCCA | 1 cut(s) | 128 |
| MluCI | AATT | 6 cut(s) | 73, 142, 537, 544, 644, 781 |
| MluNI | TGGCCA | 1 cut(s) | 128 |
| MlyI | GAGTC | 1 cut(s) | 388 |
| MmeI | TCCRAC | 2 cut(s) | 117, 708 |
| Mox20I | TGGCCA | 1 cut(s) | 128 |
| MroI | TCCGGA | 1 cut(s) | 658 |
| MscI | TGGCCA | 1 cut(s) | 128 |
| MseI | TTAA | 4 cut(s) | 161, 689, 753, 939 |
| Msp20I | TGGCCA | 1 cut(s) | 128 |
| MspA1I | CMGCKG | 1 cut(s) | 405 |
| MspI | CCGG | 2 cut(s) | 85, 659 |
| MspR9I | CCNGG | 1 cut(s) | 534 |
| Mva1269I | GAATGC | 1 cut(s) | 442 |
| MvaI | CCWGG | 1 cut(s) | 534 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1029 |
| NcoI | CCATGG | 1 cut(s) | 524 |
| NdeII | GATC | 2 cut(s) | 610, 890 |
| NlaIII | CATG | 4 cut(s) | 417, 436, 528, 962 |
| NlaIV | GGNNCC | 3 cut(s) | 409, 522, 531 |
| NmuCI | GTSAC | 3 cut(s) | 767, 853, 998 |
| PceI | AGGCCT | 2 cut(s) | 66, 799 |
| PctI | GAATGC | 1 cut(s) | 442 |
| PfeI | GAWTC | 2 cut(s) | 44, 316 |
| PfoI | TCCNGGA | 1 cut(s) | 532 |
| PkrI | GCNGC | 2 cut(s) | 964, 1025 |
| PleI | GAGTC | 1 cut(s) | 387 |
| PpsI | GAGTC | 1 cut(s) | 387 |
| Ppu21I | YACGTR | 1 cut(s) | 216 |
| Psp6I | CCWGG | 1 cut(s) | 532 |
| PspGI | CCWGG | 1 cut(s) | 532 |
| PspN4I | GGNNCC | 3 cut(s) | 409, 522, 531 |
| PspPI | GGNCC | 1 cut(s) | 520 |
| PsuI | RGATCY | 1 cut(s) | 890 |
| RsaI | GTAC | 4 cut(s) | 298, 805, 862, 1013 |
| RsaNI | GTAC | 4 cut(s) | 297, 804, 861, 1012 |
| SaqAI | TTAA | 4 cut(s) | 161, 689, 753, 939 |
| SatI | GCNGC | 2 cut(s) | 963, 1024 |
| Sau3AI | GATC | 2 cut(s) | 610, 890 |
| Sau96I | GGNCC | 1 cut(s) | 520 |
| ScaI | AGTACT | 2 cut(s) | 805, 862 |
| SchI | GAGTC | 1 cut(s) | 388 |
| ScrFI | CCNGG | 1 cut(s) | 534 |
| SfaNI | GCATC | 2 cut(s) | 325, 918 |
| SinI | GGWCC | 1 cut(s) | 520 |
| SmlI | CTYRAG | 1 cut(s) | 201 |
| SmoI | CTYRAG | 1 cut(s) | 201 |
| SnaBI | TACGTA | 1 cut(s) | 216 |
| SpeI | ACTAGT | 1 cut(s) | 857 |
| Sse9I | AATT | 6 cut(s) | 73, 142, 537, 544, 644, 781 |
| SseBI | AGGCCT | 2 cut(s) | 66, 799 |
| SsiI | CCGC | 2 cut(s) | 405, 1023 |
| SspMI | CTAG | 9 cut(s) | 18, 62, 383, 554, 696, 792, 801, 858, 894 |
| StuI | AGGCCT | 2 cut(s) | 66, 799 |
| StyD4I | CCNGG | 1 cut(s) | 532 |
| StyI | CCWWGG | 2 cut(s) | 524, 867 |
| TaaI | ACNGT | 1 cut(s) | 808 |
| TaiI | ACGT | 1 cut(s) | 218 |
| TaqI | TCGA | 1 cut(s) | 450 |
| TasI | AATT | 6 cut(s) | 73, 142, 537, 544, 644, 781 |
| TatI | WGTACW | 2 cut(s) | 803, 860 |
| TauI | GCSGC | 1 cut(s) | 1026 |
| TfiI | GAWTC | 2 cut(s) | 44, 316 |
| Tru1I | TTAA | 4 cut(s) | 161, 689, 753, 939 |
| Tru9I | TTAA | 4 cut(s) | 161, 689, 753, 939 |
| TseFI | GTSAC | 3 cut(s) | 767, 853, 998 |
| TseI | GCWGC | 1 cut(s) | 962 |
| Tsp45I | GTSAC | 3 cut(s) | 767, 853, 998 |
| TspDTI | ATGAA | 3 cut(s) | 308, 421, 642 |
| TspGWI | ACGGA | 1 cut(s) | 325 |
| VpaK11BI | GGWCC | 1 cut(s) | 520 |
| XapI | RAATTY | 2 cut(s) | 537, 781 |
| XbaI | TCTAGA | 2 cut(s) | 791, 893 |
| XspI | CTAG | 9 cut(s) | 18, 62, 383, 554, 696, 792, 801, 858, 894 |
| ZrmI | AGTACT | 2 cut(s) | 805, 862 |