Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 541 |
| Acc36I | ACCTGC | 1 cut(s) | 541 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 32, 453 |
| AccIII | TCCGGA | 1 cut(s) | 655 |
| AclWI | GGATC | 2 cut(s) | 146, 288 |
| AcoI | YGGCCR | 1 cut(s) | 42 |
| AcsI | RAATTY | 1 cut(s) | 353 |
| AcuI | CTGAAG | 1 cut(s) | 41 |
| AfaI | GTAC | 3 cut(s) | 248, 764, 898 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 32, 220, 453, 706 |
| AgsI | TTSAA | 3 cut(s) | 502, 817, 925 |
| AjnI | CCWGG | 1 cut(s) | 107 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 626, 658 |
| AleI | CACNNNNGTG | 1 cut(s) | 314 |
| AluBI | AGCT | 1 cut(s) | 805 |
| AluI | AGCT | 1 cut(s) | 805 |
| Alw21I | GWGCWC | 2 cut(s) | 641, 807 |
| Alw26I | GTCTC | 1 cut(s) | 696 |
| AlwI | GGATC | 2 cut(s) | 146, 288 |
| Aor13HI | TCCGGA | 1 cut(s) | 655 |
| AoxI | GGCC | 2 cut(s) | 42, 52 |
| ApoI | RAATTY | 1 cut(s) | 353 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 840, 872 |
| AsuC2I | CCSGG | 1 cut(s) | 391 |
| AsuHPI | GGTGA | 5 cut(s) | 47, 96, 522, 803, 812 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 696, 729 |
| BalI | TGGCCA | 1 cut(s) | 44 |
| BanII | GRGCYC | 1 cut(s) | 807 |
| BbsI | GAAGAC | 1 cut(s) | 118 |
| Bbv12I | GWGCWC | 2 cut(s) | 641, 807 |
| BccI | CCATC | 4 cut(s) | 248, 447, 782, 791 |
| BceAI | ACGGC | 1 cut(s) | 67 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 403, 437 |
| BciT130I | CCWGG | 1 cut(s) | 109 |
| BcnI | CCSGG | 1 cut(s) | 391 |
| BcoDI | GTCTC | 1 cut(s) | 696 |
| BfaI | CTAG | 1 cut(s) | 240 |
| BfmI | CTRYAG | 1 cut(s) | 602 |
| BfuAI | ACCTGC | 1 cut(s) | 541 |
| Bme1390I | CCNGG | 2 cut(s) | 109, 391 |
| BmiI | GGNNCC | 1 cut(s) | 565 |
| BmrFI | CCNGG | 2 cut(s) | 109, 391 |
| BmsI | GCATC | 1 cut(s) | 637 |
| BpiI | GAAGAC | 1 cut(s) | 118 |
| BpmI | CTGGAG | 1 cut(s) | 787 |
| BpuMI | CCSGG | 1 cut(s) | 391 |
| BsaJI | CCNNGG | 2 cut(s) | 107, 390 |
| BsaWI | WCCGGW | 1 cut(s) | 655 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 32, 220, 453, 706 |
| Bse1I | ACTGG | 3 cut(s) | 496, 770, 939 |
| Bse3DI | GCAATG | 2 cut(s) | 37, 421 |
| BseAI | TCCGGA | 1 cut(s) | 655 |
| BseBI | CCWGG | 1 cut(s) | 109 |
| BseDI | CCNNGG | 2 cut(s) | 107, 390 |
| BseGI | GGATG | 6 cut(s) | 10, 163, 186, 652, 765, 793 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 32, 220, 453, 706 |
| BseMI | GCAATG | 2 cut(s) | 37, 421 |
| BseMII | CTCAG | 1 cut(s) | 110 |
| BseNI | ACTGG | 3 cut(s) | 496, 770, 939 |
| BseRI | GAGGAG | 1 cut(s) | 784 |
| BsgI | GTGCAG | 1 cut(s) | 519 |
| BshFI | GGCC | 2 cut(s) | 44, 54 |
| BsiHKAI | GWGCWC | 2 cut(s) | 641, 807 |
| BsiSI | CCGG | 2 cut(s) | 390, 656 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 32, 220, 453, 706 |
| BsmAI | GTCTC | 1 cut(s) | 696 |
| BsnI | GGCC | 2 cut(s) | 44, 54 |
| Bsp1286I | GDGCHC | 2 cut(s) | 641, 807 |
| Bsp13I | TCCGGA | 1 cut(s) | 655 |
| Bsp143I | GATC | 5 cut(s) | 115, 138, 280, 376, 477 |
| BspANI | GGCC | 2 cut(s) | 44, 54 |
| BspCNI | CTCAG | 1 cut(s) | 111 |
| BspEI | TCCGGA | 1 cut(s) | 655 |
| BspLI | GGNNCC | 1 cut(s) | 565 |
| BspMAI | CTGCAG | 1 cut(s) | 606 |
| BspMI | ACCTGC | 1 cut(s) | 541 |
| BspPI | GGATC | 2 cut(s) | 146, 288 |
| BspQI | GCTCTTC | 1 cut(s) | 629 |
| BsrDI | GCAATG | 2 cut(s) | 37, 421 |
| BsrI | ACTGG | 3 cut(s) | 496, 770, 939 |
| BssECI | CCNNGG | 2 cut(s) | 107, 390 |
| BssMI | GATC | 5 cut(s) | 115, 138, 280, 376, 477 |
| Bst2UI | CCWGG | 1 cut(s) | 109 |
| Bst4CI | ACNGT | 2 cut(s) | 92, 230 |
| Bst6I | CTCTTC | 2 cut(s) | 629, 744 |
| BstC8I | GCNNGC | 2 cut(s) | 487, 562 |
| BstDEI | CTNAG | 3 cut(s) | 119, 200, 272 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 218 |
| BstF5I | GGATG | 6 cut(s) | 10, 163, 186, 652, 765, 793 |
| BstKTI | GATC | 5 cut(s) | 118, 141, 283, 379, 480 |
| BstMAI | GTCTC | 1 cut(s) | 696 |
| BstMBI | GATC | 5 cut(s) | 115, 138, 280, 376, 477 |
| BstNI | CCWGG | 1 cut(s) | 109 |
| BstNSI | RCATGY | 1 cut(s) | 247 |
| BstSCI | CCNGG | 2 cut(s) | 107, 389 |
| BstSFI | CTRYAG | 1 cut(s) | 602 |
| BstV2I | GAAGAC | 1 cut(s) | 118 |
| BsuRI | GGCC | 2 cut(s) | 44, 54 |
| BtgZI | GCGATG | 1 cut(s) | 466 |
| BtsCI | GGATG | 6 cut(s) | 10, 163, 186, 652, 765, 793 |
| BtsI | GCAGTG | 1 cut(s) | 480 |
| BtsIMutI | CAGTG | 3 cut(s) | 480, 489, 522 |
| BveI | ACCTGC | 1 cut(s) | 541 |
| Cac8I | GCNNGC | 2 cut(s) | 487, 562 |
| Csp6I | GTAC | 3 cut(s) | 247, 763, 897 |
| CviAII | CATG | 3 cut(s) | 244, 460, 810 |
| CviJI | RGCY | 5 cut(s) | 44, 54, 204, 564, 805 |
| CviKI_1 | RGCY | 5 cut(s) | 44, 54, 204, 564, 805 |
| CviQI | GTAC | 3 cut(s) | 247, 763, 897 |
| DdeI | CTNAG | 3 cut(s) | 119, 200, 272 |
| DpnI | GATC | 5 cut(s) | 117, 140, 282, 378, 479 |
| DpnII | GATC | 5 cut(s) | 115, 138, 280, 376, 477 |
| EaeI | YGGCCR | 1 cut(s) | 42 |
| Eam1104I | CTCTTC | 2 cut(s) | 629, 744 |
| EarI | CTCTTC | 2 cut(s) | 629, 744 |
| Ecl136II | GAGCTC | 1 cut(s) | 805 |
| Eco24I | GRGCYC | 1 cut(s) | 807 |
| Eco53kI | GAGCTC | 1 cut(s) | 805 |
| Eco57I | CTGAAG | 1 cut(s) | 41 |
| EcoICRI | GAGCTC | 1 cut(s) | 805 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 218 |
| EcoRII | CCWGG | 1 cut(s) | 107 |
| EcoT38I | GRGCYC | 1 cut(s) | 807 |
| FaeI | CATG | 3 cut(s) | 247, 463, 813 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 363, 395 |
| FatI | CATG | 3 cut(s) | 243, 459, 809 |
| FokI | GGATG | 6 cut(s) | 17, 170, 173, 659, 772, 800 |
| FriOI | GRGCYC | 1 cut(s) | 807 |
| FspBI | CTAG | 1 cut(s) | 240 |
| GsuI | CTGGAG | 1 cut(s) | 787 |
| HaeIII | GGCC | 2 cut(s) | 44, 54 |
| HapII | CCGG | 2 cut(s) | 390, 656 |
| Hin1II | CATG | 3 cut(s) | 247, 463, 813 |
| HinfI | GANTC | 6 cut(s) | 123, 161, 431, 470, 527, 689 |
| HpaII | CCGG | 2 cut(s) | 390, 656 |
| HphI | GGTGA | 5 cut(s) | 47, 96, 522, 803, 812 |
| Hpy166II | GTNNAC | 4 cut(s) | 226, 289, 339, 553 |
| Hpy188I | TCNGA | 8 cut(s) | 60, 120, 180, 253, 301, 475, 617, 918 |
| Hpy188III | TCNNGA | 4 cut(s) | 573, 656, 695, 925 |
| Hpy8I | GTNNAC | 4 cut(s) | 226, 289, 339, 553 |
| HpyAV | CCTTC | 3 cut(s) | 65, 270, 577 |
| HpyCH4III | ACNGT | 2 cut(s) | 92, 230 |
| HpyCH4IV | ACGT | 1 cut(s) | 555 |
| HpyCH4V | TGCA | 5 cut(s) | 233, 536, 604, 650, 679 |
| HpyF3I | CTNAG | 3 cut(s) | 119, 200, 272 |
| HpySE526I | ACGT | 1 cut(s) | 555 |
| Hsp92II | CATG | 3 cut(s) | 247, 463, 813 |
| Kpn2I | TCCGGA | 1 cut(s) | 655 |
| Kzo9I | GATC | 5 cut(s) | 115, 138, 280, 376, 477 |
| LguI | GCTCTTC | 1 cut(s) | 629 |
| LmnI | GCTCC | 2 cut(s) | 456, 569 |
| LweI | GCATC | 1 cut(s) | 637 |
| MaeI | CTAG | 1 cut(s) | 240 |
| MaeII | ACGT | 1 cut(s) | 555 |
| MaeIII | GTNAC | 1 cut(s) | 307 |
| MalI | GATC | 5 cut(s) | 117, 140, 282, 378, 479 |
| MboI | GATC | 5 cut(s) | 115, 138, 280, 376, 477 |
| MboII | GAAGA | 6 cut(s) | 118, 255, 314, 646, 761, 806 |
| MhlI | GDGCHC | 2 cut(s) | 641, 807 |
| MlsI | TGGCCA | 1 cut(s) | 44 |
| MluCI | AATT | 6 cut(s) | 95, 353, 463, 651, 674, 843 |
| MluNI | TGGCCA | 1 cut(s) | 44 |
| MlyI | GAGTC | 2 cut(s) | 132, 698 |
| MmeI | TCCRAC | 1 cut(s) | 820 |
| Mox20I | TGGCCA | 1 cut(s) | 44 |
| MroI | TCCGGA | 1 cut(s) | 655 |
| MscI | TGGCCA | 1 cut(s) | 44 |
| MseI | TTAA | 2 cut(s) | 516, 590 |
| MslI | CAYNNNNRTG | 1 cut(s) | 314 |
| Msp20I | TGGCCA | 1 cut(s) | 44 |
| MspI | CCGG | 2 cut(s) | 390, 656 |
| MspR9I | CCNGG | 2 cut(s) | 109, 391 |
| MvaI | CCWGG | 1 cut(s) | 109 |
| NciI | CCSGG | 1 cut(s) | 391 |
| NdeII | GATC | 5 cut(s) | 115, 138, 280, 376, 477 |
| NlaIII | CATG | 3 cut(s) | 247, 463, 813 |
| NlaIV | GGNNCC | 1 cut(s) | 565 |
| NmuCI | GTSAC | 1 cut(s) | 307 |
| NspI | RCATGY | 1 cut(s) | 247 |
| OliI | CACNNNNGTG | 1 cut(s) | 314 |
| PaqCI | CACCTGC | 1 cut(s) | 541 |
| PciSI | GCTCTTC | 1 cut(s) | 629 |
| PfeI | GAWTC | 4 cut(s) | 161, 431, 470, 527 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 32, 453 |
| PleI | GAGTC | 2 cut(s) | 131, 697 |
| PpsI | GAGTC | 2 cut(s) | 131, 697 |
| Psp124BI | GAGCTC | 1 cut(s) | 807 |
| Psp6I | CCWGG | 1 cut(s) | 107 |
| PspGI | CCWGG | 1 cut(s) | 107 |
| PspN4I | GGNNCC | 1 cut(s) | 565 |
| PstI | CTGCAG | 1 cut(s) | 606 |
| RsaI | GTAC | 3 cut(s) | 248, 764, 898 |
| RsaNI | GTAC | 3 cut(s) | 247, 763, 897 |
| RseI | CAYNNNNRTG | 1 cut(s) | 314 |
| SacI | GAGCTC | 1 cut(s) | 807 |
| SapI | GCTCTTC | 1 cut(s) | 629 |
| SaqAI | TTAA | 2 cut(s) | 516, 590 |
| Sau3AI | GATC | 5 cut(s) | 115, 138, 280, 376, 477 |
| SchI | GAGTC | 2 cut(s) | 132, 698 |
| ScrFI | CCNGG | 2 cut(s) | 109, 391 |
| SduI | GDGCHC | 2 cut(s) | 641, 807 |
| SetI | ASST | 9 cut(s) | 225, 338, 363, 535, 552, 558, 702, 714, 807 |
| SfaNI | GCATC | 1 cut(s) | 637 |
| SfcI | CTRYAG | 1 cut(s) | 602 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 314 |
| Sse9I | AATT | 6 cut(s) | 95, 353, 463, 651, 674, 843 |
| SspMI | CTAG | 1 cut(s) | 240 |
| SstI | GAGCTC | 1 cut(s) | 807 |
| StyD4I | CCNGG | 2 cut(s) | 107, 389 |
| TaaI | ACNGT | 2 cut(s) | 92, 230 |
| TaiI | ACGT | 1 cut(s) | 558 |
| TasI | AATT | 6 cut(s) | 95, 353, 463, 651, 674, 843 |
| TatI | WGTACW | 2 cut(s) | 246, 762 |
| TfiI | GAWTC | 4 cut(s) | 161, 431, 470, 527 |
| Tru1I | TTAA | 2 cut(s) | 516, 590 |
| Tru9I | TTAA | 2 cut(s) | 516, 590 |
| TscAI | CASTG | 3 cut(s) | 487, 496, 529 |
| TseFI | GTSAC | 1 cut(s) | 307 |
| Tsp45I | GTSAC | 1 cut(s) | 307 |
| TspDTI | ATGAA | 4 cut(s) | 30, 174, 476, 678 |
| TspGWI | ACGGA | 1 cut(s) | 722 |
| TspRI | CASTG | 3 cut(s) | 487, 496, 529 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 32, 453 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 218 |
| XapI | RAATTY | 1 cut(s) | 353 |
| XceI | RCATGY | 1 cut(s) | 247 |
| XspI | CTAG | 1 cut(s) | 240 |