Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 2 cut(s) | 22, 328 |
| AccB1I | GGYRCC | 2 cut(s) | 22, 328 |
| AccII | CGCG | 1 cut(s) | 113 |
| AciI | CCGC | 8 cut(s) | 14, 60, 67, 105, 116, 177, 209, 514 |
| AclWI | GGATC | 1 cut(s) | 200 |
| AcyI | GRCGYC | 1 cut(s) | 83 |
| AfaI | GTAC | 5 cut(s) | 12, 24, 58, 202, 330 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 38, 66, 367 |
| AjnI | CCWGG | 2 cut(s) | 62, 96 |
| AluBI | AGCT | 3 cut(s) | 148, 183, 482 |
| AluI | AGCT | 3 cut(s) | 148, 183, 482 |
| AlwI | GGATC | 1 cut(s) | 200 |
| ApeKI | GCWGC | 1 cut(s) | 479 |
| Asp718I | GGTACC | 2 cut(s) | 22, 328 |
| AspLEI | GCGC | 1 cut(s) | 115 |
| AsuHPI | GGTGA | 1 cut(s) | 94 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 184, 217 |
| BanI | GGYRCC | 2 cut(s) | 22, 328 |
| BbsI | GAAGAC | 1 cut(s) | 488 |
| BbvI | GCAGC | 1 cut(s) | 491 |
| BccI | CCATC | 3 cut(s) | 129, 262, 361 |
| BciT130I | CCWGG | 2 cut(s) | 64, 98 |
| BfmI | CTRYAG | 1 cut(s) | 429 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 68, 136 |
| BisI | GCNGC | 2 cut(s) | 116, 480 |
| BlsI | GCNGC | 2 cut(s) | 117, 481 |
| Bme1390I | CCNGG | 2 cut(s) | 64, 98 |
| BmiI | GGNNCC | 2 cut(s) | 24, 330 |
| BmrFI | CCNGG | 2 cut(s) | 64, 98 |
| BmrI | ACTGGG | 1 cut(s) | 167 |
| BmsI | GCATC | 1 cut(s) | 148 |
| BmuI | ACTGGG | 1 cut(s) | 167 |
| BpiI | GAAGAC | 1 cut(s) | 488 |
| BpmI | CTGGAG | 1 cut(s) | 80 |
| Bpu10I | CCTNAGC | 1 cut(s) | 263 |
| Bsa29I | ATCGAT | 1 cut(s) | 416 |
| BsaHI | GRCGYC | 1 cut(s) | 83 |
| BsaJI | CCNNGG | 2 cut(s) | 78, 323 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 371, 401 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 38, 66, 367 |
| Bse1I | ACTGG | 1 cut(s) | 162 |
| BseBI | CCWGG | 2 cut(s) | 64, 98 |
| BseCI | ATCGAT | 1 cut(s) | 416 |
| BseDI | CCNNGG | 2 cut(s) | 78, 323 |
| BseGI | GGATG | 1 cut(s) | 273 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 38, 66, 367 |
| BseMII | CTCAG | 1 cut(s) | 266 |
| BseNI | ACTGG | 1 cut(s) | 162 |
| BseXI | GCAGC | 1 cut(s) | 491 |
| Bsh1236I | CGCG | 1 cut(s) | 113 |
| BshNI | GGYRCC | 2 cut(s) | 22, 328 |
| BshVI | ATCGAT | 1 cut(s) | 416 |
| BslFI | GGGAC | 1 cut(s) | 285 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 38, 66, 367 |
| BsmFI | GGGAC | 1 cut(s) | 285 |
| Bsp143I | GATC | 2 cut(s) | 205, 519 |
| BspACI | CCGC | 8 cut(s) | 14, 60, 67, 105, 116, 177, 209, 514 |
| BspCNI | CTCAG | 1 cut(s) | 267 |
| BspDI | ATCGAT | 1 cut(s) | 416 |
| BspFNI | CGCG | 1 cut(s) | 113 |
| BspLI | GGNNCC | 2 cut(s) | 24, 330 |
| BspPI | GGATC | 1 cut(s) | 200 |
| BspT107I | GGYRCC | 2 cut(s) | 22, 328 |
| BsrI | ACTGG | 1 cut(s) | 162 |
| BssECI | CCNNGG | 2 cut(s) | 78, 323 |
| BssMI | GATC | 2 cut(s) | 205, 519 |
| BssNI | GRCGYC | 1 cut(s) | 83 |
| BssT1I | CCWWGG | 1 cut(s) | 323 |
| Bst2UI | CCWGG | 2 cut(s) | 64, 98 |
| BstACI | GRCGYC | 1 cut(s) | 83 |
| BstC8I | GCNNGC | 2 cut(s) | 53, 69 |
| BstDEI | CTNAG | 3 cut(s) | 231, 263, 275 |
| BstEII | GGTNACC | 1 cut(s) | 100 |
| BstF5I | GGATG | 1 cut(s) | 273 |
| BstFNI | CGCG | 1 cut(s) | 113 |
| BstHHI | GCGC | 1 cut(s) | 115 |
| BstKTI | GATC | 2 cut(s) | 208, 522 |
| BstMBI | GATC | 2 cut(s) | 205, 519 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 68, 136, 145 |
| BstNI | CCWGG | 2 cut(s) | 64, 98 |
| BstNSI | RCATGY | 2 cut(s) | 51, 174 |
| BstPI | GGTNACC | 1 cut(s) | 100 |
| BstSCI | CCNGG | 2 cut(s) | 62, 96 |
| BstSFI | CTRYAG | 1 cut(s) | 429 |
| BstUI | CGCG | 1 cut(s) | 113 |
| BstV1I | GCAGC | 1 cut(s) | 491 |
| BstV2I | GAAGAC | 1 cut(s) | 488 |
| Bsu15I | ATCGAT | 1 cut(s) | 416 |
| BsuTUI | ATCGAT | 1 cut(s) | 416 |
| BtsCI | GGATG | 1 cut(s) | 273 |
| Cac8I | GCNNGC | 2 cut(s) | 53, 69 |
| CfoI | GCGC | 1 cut(s) | 115 |
| ClaI | ATCGAT | 1 cut(s) | 416 |
| CseI | GACGC | 2 cut(s) | 72, 119 |
| Csp6I | GTAC | 5 cut(s) | 11, 23, 57, 201, 329 |
| CviAII | CATG | 4 cut(s) | 48, 171, 317, 443 |
| CviJI | RGCY | 7 cut(s) | 35, 71, 148, 183, 428, 482, 506 |
| CviKI_1 | RGCY | 7 cut(s) | 35, 71, 148, 183, 428, 482, 506 |
| CviQI | GTAC | 5 cut(s) | 11, 23, 57, 201, 329 |
| DdeI | CTNAG | 3 cut(s) | 231, 263, 275 |
| DpnI | GATC | 2 cut(s) | 207, 521 |
| DpnII | GATC | 2 cut(s) | 205, 519 |
| EciI | GGCGGA | 1 cut(s) | 198 |
| Eco130I | CCWWGG | 1 cut(s) | 323 |
| Eco91I | GGTNACC | 1 cut(s) | 100 |
| EcoO65I | GGTNACC | 1 cut(s) | 100 |
| EcoRII | CCWGG | 2 cut(s) | 62, 96 |
| EcoT14I | CCWWGG | 1 cut(s) | 323 |
| EcoT22I | ATGCAT | 1 cut(s) | 444 |
| ErhI | CCWWGG | 1 cut(s) | 323 |
| FaeI | CATG | 4 cut(s) | 51, 174, 320, 446 |
| FaqI | GGGAC | 1 cut(s) | 285 |
| FatI | CATG | 4 cut(s) | 47, 170, 316, 442 |
| FauI | CCCGC | 2 cut(s) | 60, 170 |
| Fnu4HI | GCNGC | 2 cut(s) | 116, 480 |
| FokI | GGATG | 1 cut(s) | 280 |
| Fsp4HI | GCNGC | 2 cut(s) | 116, 480 |
| GlaI | GCGC | 1 cut(s) | 114 |
| GluI | GCNGC | 2 cut(s) | 116, 480 |
| GsuI | CTGGAG | 1 cut(s) | 80 |
| HgaI | GACGC | 2 cut(s) | 72, 119 |
| HhaI | GCGC | 1 cut(s) | 115 |
| Hin1I | GRCGYC | 1 cut(s) | 83 |
| Hin1II | CATG | 4 cut(s) | 51, 174, 320, 446 |
| Hin6I | GCGC | 1 cut(s) | 113 |
| HinP1I | GCGC | 1 cut(s) | 113 |
| HincII | GTYRAC | 1 cut(s) | 228 |
| HindII | GTYRAC | 1 cut(s) | 228 |
| HindIII | AAGCTT | 1 cut(s) | 146 |
| HinfI | GANTC | 2 cut(s) | 218, 413 |
| HpaI | GTTAAC | 1 cut(s) | 228 |
| HphI | GGTGA | 1 cut(s) | 94 |
| Hpy166II | GTNNAC | 1 cut(s) | 228 |
| Hpy188I | TCNGA | 3 cut(s) | 88, 144, 350 |
| Hpy188III | TCNNGA | 3 cut(s) | 152, 187, 254 |
| Hpy8I | GTNNAC | 1 cut(s) | 228 |
| Hpy99I | CGWCG | 2 cut(s) | 88, 113 |
| HpyAV | CCTTC | 1 cut(s) | 458 |
| HpyCH4V | TGCA | 3 cut(s) | 51, 442, 453 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 68, 136, 145 |
| HpyF3I | CTNAG | 3 cut(s) | 231, 263, 275 |
| Hsp92I | GRCGYC | 1 cut(s) | 83 |
| Hsp92II | CATG | 4 cut(s) | 51, 174, 320, 446 |
| HspAI | GCGC | 1 cut(s) | 113 |
| KpnI | GGTACC | 2 cut(s) | 26, 332 |
| KspAI | GTTAAC | 1 cut(s) | 228 |
| Kzo9I | GATC | 2 cut(s) | 205, 519 |
| LmnI | GCTCC | 2 cut(s) | 128, 180 |
| Lsp1109I | GCAGC | 1 cut(s) | 491 |
| LweI | GCATC | 1 cut(s) | 148 |
| MaeIII | GTNAC | 1 cut(s) | 100 |
| MalI | GATC | 2 cut(s) | 207, 521 |
| MboI | GATC | 2 cut(s) | 205, 519 |
| MboII | GAAGA | 1 cut(s) | 488 |
| MluCI | AATT | 2 cut(s) | 27, 402 |
| MmeI | TCCRAC | 2 cut(s) | 66, 373 |
| MnlI | CCTC | 5 cut(s) | 88, 104, 270, 364, 373 |
| Mph1103I | ATGCAT | 1 cut(s) | 444 |
| MseI | TTAA | 3 cut(s) | 227, 401, 405 |
| MslI | CAYNNNNRTG | 1 cut(s) | 308 |
| MspR9I | CCNGG | 2 cut(s) | 64, 98 |
| MvaI | CCWGG | 2 cut(s) | 64, 98 |
| MvnI | CGCG | 1 cut(s) | 113 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 68, 136, 145 |
| NdeII | GATC | 2 cut(s) | 205, 519 |
| NlaIII | CATG | 4 cut(s) | 51, 174, 320, 446 |
| NlaIV | GGNNCC | 2 cut(s) | 24, 330 |
| NmeAIII | GCCGAG | 1 cut(s) | 59 |
| NmuCI | GTSAC | 1 cut(s) | 100 |
| NsiI | ATGCAT | 1 cut(s) | 444 |
| NspI | RCATGY | 2 cut(s) | 51, 174 |
| PacI | TTAATTAA | 1 cut(s) | 405 |
| PfeI | GAWTC | 2 cut(s) | 218, 413 |
| PkrI | GCNGC | 2 cut(s) | 117, 481 |
| Psp6I | CCWGG | 2 cut(s) | 62, 96 |
| PspEI | GGTNACC | 1 cut(s) | 100 |
| PspGI | CCWGG | 2 cut(s) | 62, 96 |
| PspN4I | GGNNCC | 2 cut(s) | 24, 330 |
| RsaI | GTAC | 5 cut(s) | 12, 24, 58, 202, 330 |
| RsaNI | GTAC | 5 cut(s) | 11, 23, 57, 201, 329 |
| RseI | CAYNNNNRTG | 1 cut(s) | 308 |
| SaqAI | TTAA | 3 cut(s) | 227, 401, 405 |
| SatI | GCNGC | 2 cut(s) | 116, 480 |
| Sau3AI | GATC | 2 cut(s) | 205, 519 |
| ScrFI | CCNGG | 2 cut(s) | 64, 98 |
| SfaNI | GCATC | 1 cut(s) | 148 |
| SfcI | CTRYAG | 1 cut(s) | 429 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 308 |
| Sse9I | AATT | 2 cut(s) | 27, 402 |
| SsiI | CCGC | 8 cut(s) | 14, 60, 67, 105, 116, 177, 209, 514 |
| StyD4I | CCNGG | 2 cut(s) | 62, 96 |
| StyI | CCWWGG | 1 cut(s) | 323 |
| TaqI | TCGA | 2 cut(s) | 186, 416 |
| TasI | AATT | 2 cut(s) | 27, 402 |
| TauI | GCSGC | 1 cut(s) | 118 |
| TfiI | GAWTC | 2 cut(s) | 218, 413 |
| Tru1I | TTAA | 3 cut(s) | 227, 401, 405 |
| Tru9I | TTAA | 3 cut(s) | 227, 401, 405 |
| TseFI | GTSAC | 1 cut(s) | 100 |
| TseI | GCWGC | 1 cut(s) | 479 |
| Tsp45I | GTSAC | 1 cut(s) | 100 |
| TspDTI | ATGAA | 1 cut(s) | 459 |
| TspGWI | ACGGA | 1 cut(s) | 298 |
| XceI | RCATGY | 2 cut(s) | 51, 174 |
| Zsp2I | ATGCAT | 1 cut(s) | 444 |