Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 742 |
| AclWI | GGATC | 1 cut(s) | 310 |
| AcsI | RAATTY | 1 cut(s) | 245 |
| AcyI | GRCGYC | 1 cut(s) | 200 |
| AfaI | GTAC | 2 cut(s) | 33, 59 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 285, 531 |
| AgsI | TTSAA | 1 cut(s) | 107 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 363 |
| AjnI | CCWGG | 1 cut(s) | 530 |
| Alw21I | GWGCWC | 1 cut(s) | 299 |
| Alw26I | GTCTC | 2 cut(s) | 350, 493 |
| AlwI | GGATC | 1 cut(s) | 310 |
| AoxI | GGCC | 1 cut(s) | 729 |
| ApeKI | GCWGC | 1 cut(s) | 503 |
| ApoI | RAATTY | 1 cut(s) | 245 |
| AseI | ATTAAT | 1 cut(s) | 777 |
| AspA2I | CCTAGG | 1 cut(s) | 61 |
| AsuC2I | CCSGG | 1 cut(s) | 280 |
| AvrII | CCTAGG | 1 cut(s) | 61 |
| BaeGI | GKGCMC | 1 cut(s) | 280 |
| BbsI | GAAGAC | 1 cut(s) | 98 |
| Bbv12I | GWGCWC | 1 cut(s) | 299 |
| BbvI | GCAGC | 1 cut(s) | 490 |
| BccI | CCATC | 3 cut(s) | 587, 748, 803 |
| BciT130I | CCWGG | 1 cut(s) | 532 |
| BcnI | CCSGG | 1 cut(s) | 280 |
| BcoDI | GTCTC | 2 cut(s) | 350, 493 |
| BfaI | CTAG | 4 cut(s) | 18, 62, 302, 449 |
| BfmI | CTRYAG | 1 cut(s) | 654 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 416 |
| BisI | GCNGC | 2 cut(s) | 504, 743 |
| BlnI | CCTAGG | 1 cut(s) | 61 |
| BlsI | GCNGC | 2 cut(s) | 505, 744 |
| Bme1390I | CCNGG | 2 cut(s) | 280, 532 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 363 |
| BmrFI | CCNGG | 2 cut(s) | 280, 532 |
| BpiI | GAAGAC | 1 cut(s) | 98 |
| BpmI | CTGGAG | 1 cut(s) | 553 |
| BpuMI | CCSGG | 1 cut(s) | 280 |
| BsaHI | GRCGYC | 1 cut(s) | 200 |
| BsaI | GGTCTC | 1 cut(s) | 493 |
| BsaJI | CCNNGG | 1 cut(s) | 61 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 285, 531 |
| Bse1I | ACTGG | 2 cut(s) | 141, 364 |
| Bse3DI | GCAATG | 1 cut(s) | 228 |
| BseBI | CCWGG | 1 cut(s) | 532 |
| BseDI | CCNNGG | 1 cut(s) | 61 |
| BseGI | GGATG | 3 cut(s) | 598, 730, 811 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 285, 531 |
| BseMI | GCAATG | 1 cut(s) | 228 |
| BseNI | ACTGG | 2 cut(s) | 141, 364 |
| BseRI | GAGGAG | 2 cut(s) | 23, 498 |
| BseSI | GKGCMC | 1 cut(s) | 280 |
| BseXI | GCAGC | 1 cut(s) | 490 |
| BshFI | GGCC | 1 cut(s) | 731 |
| BsiHKAI | GWGCWC | 1 cut(s) | 299 |
| BsiSI | CCGG | 1 cut(s) | 280 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 285, 531 |
| BsmAI | GTCTC | 2 cut(s) | 350, 493 |
| BsnI | GGCC | 1 cut(s) | 731 |
| Bso31I | GGTCTC | 1 cut(s) | 493 |
| Bsp1286I | GDGCHC | 2 cut(s) | 280, 299 |
| Bsp143I | GATC | 1 cut(s) | 315 |
| BspACI | CCGC | 1 cut(s) | 742 |
| BspANI | GGCC | 1 cut(s) | 731 |
| BspPI | GGATC | 1 cut(s) | 310 |
| BspTNI | GGTCTC | 1 cut(s) | 493 |
| BsrDI | GCAATG | 1 cut(s) | 228 |
| BsrI | ACTGG | 2 cut(s) | 141, 364 |
| BssECI | CCNNGG | 1 cut(s) | 61 |
| BssMI | GATC | 1 cut(s) | 315 |
| BssNI | GRCGYC | 1 cut(s) | 200 |
| BssT1I | CCWWGG | 1 cut(s) | 61 |
| Bst2UI | CCWGG | 1 cut(s) | 532 |
| BstACI | GRCGYC | 1 cut(s) | 200 |
| BstC8I | GCNNGC | 2 cut(s) | 142, 146 |
| BstDEI | CTNAG | 2 cut(s) | 161, 471 |
| BstF5I | GGATG | 3 cut(s) | 598, 730, 811 |
| BstKTI | GATC | 1 cut(s) | 318 |
| BstMAI | GTCTC | 2 cut(s) | 350, 493 |
| BstMBI | GATC | 1 cut(s) | 315 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 407, 416, 512 |
| BstNI | CCWGG | 1 cut(s) | 532 |
| BstSCI | CCNGG | 2 cut(s) | 278, 530 |
| BstSFI | CTRYAG | 1 cut(s) | 654 |
| BstSLI | GKGCMC | 1 cut(s) | 280 |
| BstV1I | GCAGC | 1 cut(s) | 490 |
| BstV2I | GAAGAC | 1 cut(s) | 98 |
| BstX2I | RGATCY | 1 cut(s) | 315 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 667 |
| BstYI | RGATCY | 1 cut(s) | 315 |
| BsuRI | GGCC | 1 cut(s) | 731 |
| BtsCI | GGATG | 3 cut(s) | 598, 730, 811 |
| BtsI | GCAGTG | 1 cut(s) | 771 |
| BtsIMutI | CAGTG | 1 cut(s) | 771 |
| Cac8I | GCNNGC | 2 cut(s) | 142, 146 |
| CseI | GACGC | 1 cut(s) | 189 |
| Csp6I | GTAC | 2 cut(s) | 32, 58 |
| CviAII | CATG | 2 cut(s) | 50, 512 |
| CviQI | GTAC | 2 cut(s) | 32, 58 |
| DdeI | CTNAG | 2 cut(s) | 161, 471 |
| DpnI | GATC | 1 cut(s) | 317 |
| DpnII | GATC | 1 cut(s) | 315 |
| DraI | TTTAAA | 1 cut(s) | 235 |
| DriI | GACNNNNNGTC | 1 cut(s) | 363 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 363 |
| Eco130I | CCWWGG | 1 cut(s) | 61 |
| Eco31I | GGTCTC | 1 cut(s) | 493 |
| EcoRII | CCWGG | 1 cut(s) | 530 |
| EcoT14I | CCWWGG | 1 cut(s) | 61 |
| ErhI | CCWWGG | 1 cut(s) | 61 |
| FaeI | CATG | 2 cut(s) | 53, 515 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 168, 200 |
| FatI | CATG | 2 cut(s) | 49, 511 |
| Fnu4HI | GCNGC | 2 cut(s) | 504, 743 |
| FokI | GGATG | 2 cut(s) | 605, 737 |
| Fsp4HI | GCNGC | 2 cut(s) | 504, 743 |
| FspBI | CTAG | 4 cut(s) | 18, 62, 302, 449 |
| GluI | GCNGC | 2 cut(s) | 504, 743 |
| GsuI | CTGGAG | 1 cut(s) | 553 |
| HaeIII | GGCC | 1 cut(s) | 731 |
| HapII | CCGG | 1 cut(s) | 280 |
| HgaI | GACGC | 1 cut(s) | 189 |
| Hin1I | GRCGYC | 1 cut(s) | 200 |
| Hin1II | CATG | 2 cut(s) | 53, 515 |
| HincII | GTYRAC | 1 cut(s) | 126 |
| HindII | GTYRAC | 1 cut(s) | 126 |
| HinfI | GANTC | 3 cut(s) | 379, 436, 790 |
| HpaII | CCGG | 1 cut(s) | 280 |
| Hpy166II | GTNNAC | 1 cut(s) | 126 |
| Hpy188I | TCNGA | 4 cut(s) | 191, 378, 384, 435 |
| Hpy188III | TCNNGA | 3 cut(s) | 302, 482, 566 |
| Hpy8I | GTNNAC | 1 cut(s) | 126 |
| Hpy99I | CGWCG | 1 cut(s) | 205 |
| HpyAV | CCTTC | 3 cut(s) | 450, 531, 592 |
| HpyCH4IV | ACGT | 1 cut(s) | 101 |
| HpyCH4V | TGCA | 2 cut(s) | 4, 221 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 407, 416, 512 |
| HpyF3I | CTNAG | 2 cut(s) | 161, 471 |
| HpySE526I | ACGT | 1 cut(s) | 101 |
| Hsp92I | GRCGYC | 1 cut(s) | 200 |
| Hsp92II | CATG | 2 cut(s) | 53, 515 |
| Kzo9I | GATC | 1 cut(s) | 315 |
| LmnI | GCTCC | 2 cut(s) | 294, 511 |
| Lsp1109I | GCAGC | 1 cut(s) | 490 |
| MaeI | CTAG | 4 cut(s) | 18, 62, 302, 449 |
| MaeII | ACGT | 1 cut(s) | 101 |
| MaeIII | GTNAC | 1 cut(s) | 207 |
| MalI | GATC | 1 cut(s) | 317 |
| MboI | GATC | 1 cut(s) | 315 |
| MboII | GAAGA | 5 cut(s) | 103, 142, 325, 435, 609 |
| MflI | RGATCY | 1 cut(s) | 315 |
| MhlI | GDGCHC | 2 cut(s) | 280, 299 |
| MluCI | AATT | 5 cut(s) | 155, 245, 394, 622, 702 |
| MlyI | GAGTC | 2 cut(s) | 388, 799 |
| MnlI | CCTC | 8 cut(s) | 4, 37, 478, 493, 519, 688, 721, 751 |
| MseI | TTAA | 4 cut(s) | 234, 393, 701, 777 |
| MspI | CCGG | 1 cut(s) | 280 |
| MspR9I | CCNGG | 2 cut(s) | 280, 532 |
| MvaI | CCWGG | 1 cut(s) | 532 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 407, 416, 512 |
| NciI | CCSGG | 1 cut(s) | 280 |
| NdeII | GATC | 1 cut(s) | 315 |
| NlaIII | CATG | 2 cut(s) | 53, 515 |
| PfeI | GAWTC | 1 cut(s) | 436 |
| PfoI | TCCNGGA | 1 cut(s) | 530 |
| PkrI | GCNGC | 2 cut(s) | 505, 744 |
| PleI | GAGTC | 2 cut(s) | 387, 798 |
| PpsI | GAGTC | 2 cut(s) | 387, 798 |
| PshBI | ATTAAT | 1 cut(s) | 777 |
| Psp6I | CCWGG | 1 cut(s) | 530 |
| PspGI | CCWGG | 1 cut(s) | 530 |
| PsuI | RGATCY | 1 cut(s) | 315 |
| RsaI | GTAC | 2 cut(s) | 33, 59 |
| RsaNI | GTAC | 2 cut(s) | 32, 58 |
| SaqAI | TTAA | 4 cut(s) | 234, 393, 701, 777 |
| SatI | GCNGC | 2 cut(s) | 504, 743 |
| Sau3AI | GATC | 1 cut(s) | 315 |
| SchI | GAGTC | 2 cut(s) | 388, 799 |
| ScrFI | CCNGG | 2 cut(s) | 280, 532 |
| SduI | GDGCHC | 2 cut(s) | 280, 299 |
| SetI | ASST | 9 cut(s) | 15, 39, 63, 77, 85, 104, 214, 489, 655 |
| SfcI | CTRYAG | 1 cut(s) | 654 |
| Sse9I | AATT | 5 cut(s) | 155, 245, 394, 622, 702 |
| SsiI | CCGC | 1 cut(s) | 742 |
| SspI | AATATT | 1 cut(s) | 781 |
| SspMI | CTAG | 4 cut(s) | 18, 62, 302, 449 |
| StyD4I | CCNGG | 2 cut(s) | 278, 530 |
| StyI | CCWWGG | 1 cut(s) | 61 |
| TaiI | ACGT | 1 cut(s) | 104 |
| TaqI | TCGA | 1 cut(s) | 752 |
| TasI | AATT | 5 cut(s) | 155, 245, 394, 622, 702 |
| TauI | GCSGC | 1 cut(s) | 745 |
| TfiI | GAWTC | 1 cut(s) | 436 |
| Tru1I | TTAA | 4 cut(s) | 234, 393, 701, 777 |
| Tru9I | TTAA | 4 cut(s) | 234, 393, 701, 777 |
| TscAI | CASTG | 1 cut(s) | 771 |
| TseI | GCWGC | 1 cut(s) | 503 |
| TspGWI | ACGGA | 1 cut(s) | 401 |
| TspRI | CASTG | 1 cut(s) | 771 |
| VspI | ATTAAT | 1 cut(s) | 777 |
| XapI | RAATTY | 1 cut(s) | 245 |
| XbaI | TCTAGA | 1 cut(s) | 301 |
| XmaJI | CCTAGG | 1 cut(s) | 61 |
| XspI | CTAG | 4 cut(s) | 18, 62, 302, 449 |