Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 36 |
| AccII | CGCG | 1 cut(s) | 353 |
| AclWI | GGATC | 1 cut(s) | 533 |
| AcoI | YGGCCR | 1 cut(s) | 438 |
| AcsI | RAATTY | 1 cut(s) | 108 |
| AcuI | CTGAAG | 1 cut(s) | 411 |
| AcyI | GRCGYC | 2 cut(s) | 363, 477 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 238, 473 |
| AgsI | TTSAA | 1 cut(s) | 255 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 352 |
| AjnI | CCWGG | 1 cut(s) | 521 |
| AluBI | AGCT | 1 cut(s) | 335 |
| AluI | AGCT | 1 cut(s) | 335 |
| Alw26I | GTCTC | 1 cut(s) | 81 |
| AlwI | GGATC | 1 cut(s) | 533 |
| AoxI | GGCC | 1 cut(s) | 438 |
| ApeKI | GCWGC | 2 cut(s) | 335, 422 |
| ApoI | RAATTY | 1 cut(s) | 108 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 351, 383 |
| AspLEI | GCGC | 1 cut(s) | 120 |
| AspS9I | GGNCC | 1 cut(s) | 267 |
| AsuHPI | GGTGA | 4 cut(s) | 50, 217, 472, 520 |
| AvaII | GGWCC | 1 cut(s) | 267 |
| BalI | TGGCCA | 1 cut(s) | 440 |
| BbsI | GAAGAC | 1 cut(s) | 366 |
| BbvI | GCAGC | 2 cut(s) | 322, 409 |
| BccI | CCATC | 3 cut(s) | 203, 236, 302 |
| BceAI | ACGGC | 2 cut(s) | 350, 490 |
| BciT130I | CCWGG | 1 cut(s) | 523 |
| BcoDI | GTCTC | 1 cut(s) | 81 |
| BfaI | CTAG | 2 cut(s) | 200, 544 |
| BfuAI | ACCTGC | 1 cut(s) | 36 |
| BglII | AGATCT | 1 cut(s) | 404 |
| BisI | GCNGC | 2 cut(s) | 336, 423 |
| BlsI | GCNGC | 2 cut(s) | 337, 424 |
| Bme1390I | CCNGG | 1 cut(s) | 523 |
| Bme18I | GGWCC | 1 cut(s) | 267 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 352 |
| BmgT120I | GGNCC | 1 cut(s) | 267 |
| BmiI | GGNNCC | 1 cut(s) | 268 |
| BmrFI | CCNGG | 1 cut(s) | 523 |
| BoxI | GACNNNNGTC | 2 cut(s) | 276, 320 |
| BpiI | GAAGAC | 1 cut(s) | 366 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 383, 415 |
| BpmI | CTGGAG | 2 cut(s) | 385, 393 |
| BsaHI | GRCGYC | 2 cut(s) | 363, 477 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 238, 473 |
| Bse1I | ACTGG | 3 cut(s) | 410, 467, 502 |
| BseBI | CCWGG | 1 cut(s) | 523 |
| BseGI | GGATG | 2 cut(s) | 195, 228 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 238, 473 |
| BseNI | ACTGG | 3 cut(s) | 410, 467, 502 |
| BseRI | GAGGAG | 1 cut(s) | 257 |
| BseXI | GCAGC | 2 cut(s) | 322, 409 |
| BseYI | CCCAGC | 3 cut(s) | 263, 285, 331 |
| Bsh1236I | CGCG | 1 cut(s) | 353 |
| BshFI | GGCC | 1 cut(s) | 440 |
| BslFI | GGGAC | 1 cut(s) | 280 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 238, 473 |
| BsmAI | GTCTC | 1 cut(s) | 81 |
| BsmFI | GGGAC | 1 cut(s) | 280 |
| BsmI | GAATGC | 1 cut(s) | 247 |
| BsnI | GGCC | 1 cut(s) | 440 |
| Bsp143I | GATC | 4 cut(s) | 342, 378, 404, 525 |
| BspANI | GGCC | 1 cut(s) | 440 |
| BspFNI | CGCG | 1 cut(s) | 353 |
| BspLI | GGNNCC | 1 cut(s) | 268 |
| BspMI | ACCTGC | 1 cut(s) | 36 |
| BspPI | GGATC | 1 cut(s) | 533 |
| BsrI | ACTGG | 3 cut(s) | 410, 467, 502 |
| BssMI | GATC | 4 cut(s) | 342, 378, 404, 525 |
| BssNI | GRCGYC | 2 cut(s) | 363, 477 |
| Bst2UI | CCWGG | 1 cut(s) | 523 |
| Bst4CI | ACNGT | 2 cut(s) | 9, 322 |
| Bst6I | CTCTTC | 1 cut(s) | 304 |
| BstACI | GRCGYC | 2 cut(s) | 363, 477 |
| BstF5I | GGATG | 2 cut(s) | 195, 228 |
| BstFNI | CGCG | 1 cut(s) | 353 |
| BstHHI | GCGC | 1 cut(s) | 120 |
| BstKTI | GATC | 4 cut(s) | 345, 381, 407, 528 |
| BstMAI | GTCTC | 1 cut(s) | 81 |
| BstMBI | GATC | 4 cut(s) | 342, 378, 404, 525 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 200, 332, 518 |
| BstNI | CCWGG | 1 cut(s) | 523 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 276, 320 |
| BstSCI | CCNGG | 1 cut(s) | 521 |
| BstUI | CGCG | 1 cut(s) | 353 |
| BstV1I | GCAGC | 2 cut(s) | 322, 409 |
| BstV2I | GAAGAC | 1 cut(s) | 366 |
| BstX2I | RGATCY | 1 cut(s) | 404 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 448 |
| BstYI | RGATCY | 1 cut(s) | 404 |
| BsuRI | GGCC | 1 cut(s) | 440 |
| BtsCI | GGATG | 2 cut(s) | 195, 228 |
| BtsIMutI | CAGTG | 2 cut(s) | 5, 90 |
| BveI | ACCTGC | 1 cut(s) | 36 |
| CfoI | GCGC | 1 cut(s) | 120 |
| Cfr13I | GGNCC | 1 cut(s) | 267 |
| CseI | GACGC | 4 cut(s) | 342, 371, 428, 466 |
| CviAII | CATG | 1 cut(s) | 16 |
| CviJI | RGCY | 7 cut(s) | 42, 203, 263, 289, 335, 440, 534 |
| CviKI_1 | RGCY | 7 cut(s) | 42, 203, 263, 289, 335, 440, 534 |
| DpnI | GATC | 4 cut(s) | 344, 380, 406, 527 |
| DpnII | GATC | 4 cut(s) | 342, 378, 404, 525 |
| DraI | TTTAAA | 1 cut(s) | 169 |
| DriI | GACNNNNNGTC | 1 cut(s) | 352 |
| EaeI | YGGCCR | 1 cut(s) | 438 |
| Eam1104I | CTCTTC | 1 cut(s) | 304 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 352 |
| EarI | CTCTTC | 1 cut(s) | 304 |
| Eco47I | GGWCC | 1 cut(s) | 267 |
| Eco57I | CTGAAG | 1 cut(s) | 411 |
| EcoRII | CCWGG | 1 cut(s) | 521 |
| FaeI | CATG | 1 cut(s) | 19 |
| FaiI | YATR | 7 cut(s) | 12, 17, 67, 82, 136, 180, 464 |
| FaqI | GGGAC | 1 cut(s) | 280 |
| FatI | CATG | 1 cut(s) | 15 |
| Fnu4HI | GCNGC | 2 cut(s) | 336, 423 |
| FokI | GGATG | 2 cut(s) | 182, 215 |
| Fsp4HI | GCNGC | 2 cut(s) | 336, 423 |
| FspBI | CTAG | 2 cut(s) | 200, 544 |
| GlaI | GCGC | 1 cut(s) | 119 |
| GluI | GCNGC | 2 cut(s) | 336, 423 |
| GsaI | CCCAGC | 3 cut(s) | 267, 289, 335 |
| GsuI | CTGGAG | 2 cut(s) | 385, 393 |
| HaeIII | GGCC | 1 cut(s) | 440 |
| HgaI | GACGC | 4 cut(s) | 342, 371, 428, 466 |
| HhaI | GCGC | 1 cut(s) | 120 |
| Hin1I | GRCGYC | 2 cut(s) | 363, 477 |
| Hin1II | CATG | 1 cut(s) | 19 |
| Hin6I | GCGC | 1 cut(s) | 118 |
| HinP1I | GCGC | 1 cut(s) | 118 |
| HinfI | GANTC | 1 cut(s) | 222 |
| HphI | GGTGA | 4 cut(s) | 50, 217, 472, 520 |
| Hpy166II | GTNNAC | 1 cut(s) | 472 |
| Hpy188I | TCNGA | 2 cut(s) | 141, 358 |
| Hpy188III | TCNNGA | 2 cut(s) | 313, 402 |
| Hpy8I | GTNNAC | 1 cut(s) | 472 |
| Hpy99I | CGWCG | 3 cut(s) | 371, 422, 541 |
| HpyAV | CCTTC | 2 cut(s) | 146, 253 |
| HpyCH4III | ACNGT | 2 cut(s) | 9, 322 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 200, 332, 518 |
| Hsp92I | GRCGYC | 2 cut(s) | 363, 477 |
| Hsp92II | CATG | 1 cut(s) | 19 |
| HspAI | GCGC | 1 cut(s) | 118 |
| Kzo9I | GATC | 4 cut(s) | 342, 378, 404, 525 |
| LmnI | GCTCC | 2 cut(s) | 244, 460 |
| Lsp1109I | GCAGC | 2 cut(s) | 322, 409 |
| MaeI | CTAG | 2 cut(s) | 200, 544 |
| MaeIII | GTNAC | 1 cut(s) | 478 |
| MalI | GATC | 4 cut(s) | 344, 380, 406, 527 |
| MboI | GATC | 4 cut(s) | 342, 378, 404, 525 |
| MboII | GAAGA | 3 cut(s) | 243, 291, 371 |
| MfeI | CAATTG | 1 cut(s) | 121 |
| MflI | RGATCY | 1 cut(s) | 404 |
| MlsI | TGGCCA | 1 cut(s) | 440 |
| MluCI | AATT | 3 cut(s) | 62, 108, 121 |
| MluNI | TGGCCA | 1 cut(s) | 440 |
| MnlI | CCTC | 4 cut(s) | 53, 235, 301, 407 |
| Mox20I | TGGCCA | 1 cut(s) | 440 |
| MscI | TGGCCA | 1 cut(s) | 440 |
| MseI | TTAA | 1 cut(s) | 168 |
| MslI | CAYNNNNRTG | 1 cut(s) | 79 |
| Msp20I | TGGCCA | 1 cut(s) | 440 |
| MspA1I | CMGCKG | 1 cut(s) | 335 |
| MspR9I | CCNGG | 1 cut(s) | 523 |
| MunI | CAATTG | 1 cut(s) | 121 |
| Mva1269I | GAATGC | 1 cut(s) | 247 |
| MvaI | CCWGG | 1 cut(s) | 523 |
| MvnI | CGCG | 1 cut(s) | 353 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 200, 332, 518 |
| NdeII | GATC | 4 cut(s) | 342, 378, 404, 525 |
| NlaIII | CATG | 1 cut(s) | 19 |
| NlaIV | GGNNCC | 1 cut(s) | 268 |
| NmuCI | GTSAC | 1 cut(s) | 478 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 495 |
| PctI | GAATGC | 1 cut(s) | 247 |
| PfeI | GAWTC | 1 cut(s) | 222 |
| PflFI | GACNNNGTC | 1 cut(s) | 365 |
| PkrI | GCNGC | 2 cut(s) | 337, 424 |
| PshAI | GACNNNNGTC | 2 cut(s) | 276, 320 |
| Psp6I | CCWGG | 1 cut(s) | 521 |
| PspFI | CCCAGC | 3 cut(s) | 263, 285, 331 |
| PspGI | CCWGG | 1 cut(s) | 521 |
| PspN4I | GGNNCC | 1 cut(s) | 268 |
| PspPI | GGNCC | 1 cut(s) | 267 |
| PsuI | RGATCY | 1 cut(s) | 404 |
| PsyI | GACNNNGTC | 1 cut(s) | 365 |
| PvuII | CAGCTG | 1 cut(s) | 335 |
| RseI | CAYNNNNRTG | 1 cut(s) | 79 |
| SaqAI | TTAA | 1 cut(s) | 168 |
| SatI | GCNGC | 2 cut(s) | 336, 423 |
| Sau3AI | GATC | 4 cut(s) | 342, 378, 404, 525 |
| Sau96I | GGNCC | 1 cut(s) | 267 |
| ScrFI | CCNGG | 1 cut(s) | 523 |
| SetI | ASST | 6 cut(s) | 30, 157, 192, 276, 337, 399 |
| SinI | GGWCC | 1 cut(s) | 267 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 79 |
| Sse9I | AATT | 3 cut(s) | 62, 108, 121 |
| SspMI | CTAG | 2 cut(s) | 200, 544 |
| StyD4I | CCNGG | 1 cut(s) | 521 |
| TaaI | ACNGT | 2 cut(s) | 9, 322 |
| TaqI | TCGA | 3 cut(s) | 345, 417, 489 |
| TaqII | GACCGA | 1 cut(s) | 284 |
| TasI | AATT | 3 cut(s) | 62, 108, 121 |
| TfiI | GAWTC | 1 cut(s) | 222 |
| Tru1I | TTAA | 1 cut(s) | 168 |
| Tru9I | TTAA | 1 cut(s) | 168 |
| TscAI | CASTG | 2 cut(s) | 12, 97 |
| TseFI | GTSAC | 1 cut(s) | 478 |
| TseI | GCWGC | 2 cut(s) | 335, 422 |
| Tsp45I | GTSAC | 1 cut(s) | 478 |
| TspDTI | ATGAA | 5 cut(s) | 32, 63, 101, 165, 291 |
| TspGWI | ACGGA | 1 cut(s) | 447 |
| TspRI | CASTG | 2 cut(s) | 12, 97 |
| Tth111I | GACNNNGTC | 1 cut(s) | 365 |
| VpaK11BI | GGWCC | 1 cut(s) | 267 |
| XapI | RAATTY | 1 cut(s) | 108 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 235 |
| XspI | CTAG | 2 cut(s) | 200, 544 |