Reverse transcriptase-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 47 - 149 | 1.5e-07 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 522 |
| AciI | CCGC | 3 cut(s) | 489, 522, 553 |
| AclWI | GGATC | 2 cut(s) | 642, 653 |
| AcoI | YGGCCR | 1 cut(s) | 583 |
| AcyI | GRCGYC | 1 cut(s) | 734 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 292, 592, 668 |
| AflII | CTTAAG | 1 cut(s) | 29 |
| AflIII | ACRYGT | 1 cut(s) | 694 |
| AgsI | TTSAA | 1 cut(s) | 13 |
| AjiI | CACGTC | 1 cut(s) | 695 |
| AluBI | AGCT | 4 cut(s) | 109, 184, 255, 437 |
| AluI | AGCT | 4 cut(s) | 109, 184, 255, 437 |
| Alw21I | GWGCWC | 1 cut(s) | 22 |
| Alw26I | GTCTC | 1 cut(s) | 72 |
| Alw44I | GTGCAC | 1 cut(s) | 18 |
| AlwI | GGATC | 2 cut(s) | 642, 653 |
| AoxI | GGCC | 1 cut(s) | 583 |
| ApaLI | GTGCAC | 1 cut(s) | 18 |
| ApeKI | GCWGC | 4 cut(s) | 212, 215, 434, 596 |
| AspS9I | GGNCC | 1 cut(s) | 606 |
| AsuHPI | GGTGA | 1 cut(s) | 160 |
| AvaII | GGWCC | 1 cut(s) | 606 |
| BaeGI | GKGCMC | 1 cut(s) | 22 |
| Bbv12I | GWGCWC | 1 cut(s) | 22 |
| BbvI | GCAGC | 4 cut(s) | 199, 227, 446, 608 |
| BciVI | GTATCC | 1 cut(s) | 412 |
| BclI | TGATCA | 2 cut(s) | 615, 625 |
| BcoDI | GTCTC | 1 cut(s) | 72 |
| BfaI | CTAG | 2 cut(s) | 122, 504 |
| BfmI | CTRYAG | 1 cut(s) | 213 |
| BfrI | CTTAAG | 1 cut(s) | 29 |
| BfuI | GTATCC | 1 cut(s) | 412 |
| BisI | GCNGC | 5 cut(s) | 213, 216, 435, 523, 597 |
| BlsI | GCNGC | 5 cut(s) | 214, 217, 436, 524, 598 |
| Bme18I | GGWCC | 1 cut(s) | 606 |
| BmgBI | CACGTC | 1 cut(s) | 695 |
| BmgT120I | GGNCC | 1 cut(s) | 606 |
| BmiI | GGNNCC | 1 cut(s) | 607 |
| BmsI | GCATC | 3 cut(s) | 154, 486, 690 |
| BpuEI | CTTGAG | 1 cut(s) | 73 |
| BsaBI | GATNNNNATC | 1 cut(s) | 663 |
| BsaHI | GRCGYC | 1 cut(s) | 734 |
| BsaI | GGTCTC | 1 cut(s) | 72 |
| BsaJI | CCNNGG | 1 cut(s) | 405 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 292, 592, 668 |
| Bse3DI | GCAATG | 2 cut(s) | 532, 606 |
| Bse8I | GATNNNNATC | 1 cut(s) | 663 |
| BseDI | CCNNGG | 1 cut(s) | 405 |
| BseGI | GGATG | 3 cut(s) | 322, 572, 720 |
| BseJI | GATNNNNATC | 1 cut(s) | 663 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 292, 592, 668 |
| BseMI | GCAATG | 2 cut(s) | 532, 606 |
| BseRI | GAGGAG | 1 cut(s) | 62 |
| BseSI | GKGCMC | 1 cut(s) | 22 |
| BseX3I | CGGCCG | 1 cut(s) | 583 |
| BseXI | GCAGC | 4 cut(s) | 199, 227, 446, 608 |
| Bsh1285I | CGRYCG | 1 cut(s) | 586 |
| BshFI | GGCC | 1 cut(s) | 585 |
| BsiEI | CGRYCG | 1 cut(s) | 586 |
| BsiHKAI | GWGCWC | 1 cut(s) | 22 |
| BsiSI | CCGG | 1 cut(s) | 738 |
| BslFI | GGGAC | 1 cut(s) | 524 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 292, 592, 668 |
| BsmAI | GTCTC | 1 cut(s) | 72 |
| BsmFI | GGGAC | 1 cut(s) | 524 |
| BsnI | GGCC | 1 cut(s) | 585 |
| Bso31I | GGTCTC | 1 cut(s) | 72 |
| Bsp1286I | GDGCHC | 1 cut(s) | 22 |
| Bsp143I | GATC | 6 cut(s) | 176, 615, 625, 634, 658, 664 |
| BspACI | CCGC | 3 cut(s) | 489, 522, 553 |
| BspANI | GGCC | 1 cut(s) | 585 |
| BspLI | GGNNCC | 1 cut(s) | 607 |
| BspMAI | CTGCAG | 1 cut(s) | 217 |
| BspPI | GGATC | 2 cut(s) | 642, 653 |
| BspQI | GCTCTTC | 1 cut(s) | 378 |
| BspTI | CTTAAG | 1 cut(s) | 29 |
| BspTNI | GGTCTC | 1 cut(s) | 72 |
| BsrBI | CCGCTC | 1 cut(s) | 522 |
| BsrDI | GCAATG | 2 cut(s) | 532, 606 |
| BssECI | CCNNGG | 1 cut(s) | 405 |
| BssMI | GATC | 6 cut(s) | 176, 615, 625, 634, 658, 664 |
| BssNI | GRCGYC | 1 cut(s) | 734 |
| BssT1I | CCWWGG | 1 cut(s) | 405 |
| Bst4CI | ACNGT | 1 cut(s) | 346 |
| Bst6I | CTCTTC | 2 cut(s) | 80, 378 |
| BstACI | GRCGYC | 1 cut(s) | 734 |
| BstAFI | CTTAAG | 1 cut(s) | 29 |
| BstDEI | CTNAG | 1 cut(s) | 438 |
| BstF5I | GGATG | 3 cut(s) | 322, 572, 720 |
| BstKTI | GATC | 6 cut(s) | 179, 618, 628, 637, 661, 667 |
| BstMAI | GTCTC | 1 cut(s) | 72 |
| BstMBI | GATC | 6 cut(s) | 176, 615, 625, 634, 658, 664 |
| BstMCI | CGRYCG | 1 cut(s) | 586 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 431, 443 |
| BstNSI | RCATGY | 1 cut(s) | 39 |
| BstSFI | CTRYAG | 1 cut(s) | 213 |
| BstSLI | GKGCMC | 1 cut(s) | 22 |
| BstV1I | GCAGC | 4 cut(s) | 199, 227, 446, 608 |
| BstX2I | RGATCY | 1 cut(s) | 634 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 271 |
| BstYI | RGATCY | 1 cut(s) | 634 |
| BstZI | CGGCCG | 1 cut(s) | 583 |
| BsuI | GTATCC | 1 cut(s) | 412 |
| BsuRI | GGCC | 1 cut(s) | 585 |
| BtrI | CACGTC | 1 cut(s) | 695 |
| BtsCI | GGATG | 3 cut(s) | 322, 572, 720 |
| Cfr13I | GGNCC | 1 cut(s) | 606 |
| CseI | GACGC | 1 cut(s) | 723 |
| CviAII | CATG | 3 cut(s) | 36, 398, 428 |
| DdeI | CTNAG | 1 cut(s) | 438 |
| DpnI | GATC | 6 cut(s) | 178, 617, 627, 636, 660, 666 |
| DpnII | GATC | 6 cut(s) | 176, 615, 625, 634, 658, 664 |
| EaeI | YGGCCR | 1 cut(s) | 583 |
| EagI | CGGCCG | 1 cut(s) | 583 |
| Eam1104I | CTCTTC | 2 cut(s) | 80, 378 |
| EarI | CTCTTC | 2 cut(s) | 80, 378 |
| EclXI | CGGCCG | 1 cut(s) | 583 |
| Eco130I | CCWWGG | 1 cut(s) | 405 |
| Eco31I | GGTCTC | 1 cut(s) | 72 |
| Eco47I | GGWCC | 1 cut(s) | 606 |
| Eco52I | CGGCCG | 1 cut(s) | 583 |
| EcoT14I | CCWWGG | 1 cut(s) | 405 |
| ErhI | CCWWGG | 1 cut(s) | 405 |
| FaeI | CATG | 3 cut(s) | 39, 401, 431 |
| FaqI | GGGAC | 1 cut(s) | 524 |
| FatI | CATG | 3 cut(s) | 35, 397, 427 |
| FbaI | TGATCA | 2 cut(s) | 615, 625 |
| Fnu4HI | GCNGC | 5 cut(s) | 213, 216, 435, 523, 597 |
| FokI | GGATG | 3 cut(s) | 329, 559, 727 |
| Fsp4HI | GCNGC | 5 cut(s) | 213, 216, 435, 523, 597 |
| FspBI | CTAG | 2 cut(s) | 122, 504 |
| GluI | GCNGC | 5 cut(s) | 213, 216, 435, 523, 597 |
| HaeIII | GGCC | 1 cut(s) | 585 |
| HapII | CCGG | 1 cut(s) | 738 |
| HgaI | GACGC | 1 cut(s) | 723 |
| Hin1I | GRCGYC | 1 cut(s) | 734 |
| Hin1II | CATG | 3 cut(s) | 39, 401, 431 |
| HinfI | GANTC | 5 cut(s) | 115, 158, 275, 326, 675 |
| HpaII | CCGG | 1 cut(s) | 738 |
| HphI | GGTGA | 1 cut(s) | 160 |
| Hpy166II | GTNNAC | 2 cut(s) | 20, 190 |
| Hpy188I | TCNGA | 7 cut(s) | 163, 181, 280, 458, 497, 620, 639 |
| Hpy188III | TCNNGA | 2 cut(s) | 79, 662 |
| Hpy8I | GTNNAC | 2 cut(s) | 20, 190 |
| Hpy99I | CGWCG | 1 cut(s) | 696 |
| HpyAV | CCTTC | 3 cut(s) | 501, 538, 705 |
| HpyCH4III | ACNGT | 1 cut(s) | 346 |
| HpyCH4IV | ACGT | 3 cut(s) | 16, 513, 694 |
| HpyCH4V | TGCA | 5 cut(s) | 20, 167, 215, 350, 477 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 431, 443 |
| HpyF3I | CTNAG | 1 cut(s) | 438 |
| HpySE526I | ACGT | 3 cut(s) | 16, 513, 694 |
| Hsp92I | GRCGYC | 1 cut(s) | 734 |
| Hsp92II | CATG | 3 cut(s) | 39, 401, 431 |
| Ksp22I | TGATCA | 2 cut(s) | 615, 625 |
| Kzo9I | GATC | 6 cut(s) | 176, 615, 625, 634, 658, 664 |
| LguI | GCTCTTC | 1 cut(s) | 378 |
| LmnI | GCTCC | 2 cut(s) | 181, 431 |
| LpnPI | CCDG | 4 cut(s) | 92, 210, 315, 675 |
| Lsp1109I | GCAGC | 4 cut(s) | 199, 227, 446, 608 |
| LweI | GCATC | 3 cut(s) | 154, 486, 690 |
| MaeI | CTAG | 2 cut(s) | 122, 504 |
| MaeII | ACGT | 3 cut(s) | 16, 513, 694 |
| MaeIII | GTNAC | 2 cut(s) | 229, 301 |
| MalI | GATC | 6 cut(s) | 178, 617, 627, 636, 660, 666 |
| MbiI | CCGCTC | 1 cut(s) | 522 |
| MboI | GATC | 6 cut(s) | 176, 615, 625, 634, 658, 664 |
| MboII | GAAGA | 3 cut(s) | 67, 110, 365 |
| MfeI | CAATTG | 2 cut(s) | 538, 629 |
| MflI | RGATCY | 1 cut(s) | 634 |
| MhlI | GDGCHC | 1 cut(s) | 22 |
| MluCI | AATT | 6 cut(s) | 58, 236, 290, 415, 538, 629 |
| MmeI | TCCRAC | 2 cut(s) | 475, 600 |
| MnlI | CCTC | 3 cut(s) | 83, 202, 525 |
| MseI | TTAA | 2 cut(s) | 30, 288 |
| MslI | CAYNNNNRTG | 1 cut(s) | 131 |
| MspCI | CTTAAG | 1 cut(s) | 29 |
| MspI | CCGG | 1 cut(s) | 738 |
| MunI | CAATTG | 2 cut(s) | 538, 629 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 431, 443 |
| NdeII | GATC | 6 cut(s) | 176, 615, 625, 634, 658, 664 |
| NlaIII | CATG | 3 cut(s) | 39, 401, 431 |
| NlaIV | GGNNCC | 1 cut(s) | 607 |
| NspI | RCATGY | 1 cut(s) | 39 |
| PciSI | GCTCTTC | 1 cut(s) | 378 |
| PfeI | GAWTC | 5 cut(s) | 115, 158, 275, 326, 675 |
| PkrI | GCNGC | 5 cut(s) | 214, 217, 436, 524, 598 |
| PspN4I | GGNNCC | 1 cut(s) | 607 |
| PspPI | GGNCC | 1 cut(s) | 606 |
| PstI | CTGCAG | 1 cut(s) | 217 |
| PsuI | RGATCY | 1 cut(s) | 634 |
| RseI | CAYNNNNRTG | 1 cut(s) | 131 |
| SapI | GCTCTTC | 1 cut(s) | 378 |
| SaqAI | TTAA | 2 cut(s) | 30, 288 |
| SatI | GCNGC | 5 cut(s) | 213, 216, 435, 523, 597 |
| Sau3AI | GATC | 6 cut(s) | 176, 615, 625, 634, 658, 664 |
| Sau96I | GGNCC | 1 cut(s) | 606 |
| SduI | GDGCHC | 1 cut(s) | 22 |
| SetI | ASST | 9 cut(s) | 19, 57, 111, 186, 257, 303, 439, 516, 697 |
| SfaNI | GCATC | 3 cut(s) | 154, 486, 690 |
| SfcI | CTRYAG | 1 cut(s) | 213 |
| SinI | GGWCC | 1 cut(s) | 606 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 131 |
| SmlI | CTYRAG | 2 cut(s) | 29, 88 |
| SmoI | CTYRAG | 2 cut(s) | 29, 88 |
| Sse9I | AATT | 6 cut(s) | 58, 236, 290, 415, 538, 629 |
| SsiI | CCGC | 3 cut(s) | 489, 522, 553 |
| SspI | AATATT | 1 cut(s) | 99 |
| SspMI | CTAG | 2 cut(s) | 122, 504 |
| StyI | CCWWGG | 1 cut(s) | 405 |
| TaaI | ACNGT | 1 cut(s) | 346 |
| TaiI | ACGT | 3 cut(s) | 19, 516, 697 |
| TaqI | TCGA | 3 cut(s) | 569, 657, 691 |
| TasI | AATT | 6 cut(s) | 58, 236, 290, 415, 538, 629 |
| TauI | GCSGC | 1 cut(s) | 525 |
| TfiI | GAWTC | 5 cut(s) | 115, 158, 275, 326, 675 |
| Tru1I | TTAA | 2 cut(s) | 30, 288 |
| Tru9I | TTAA | 2 cut(s) | 30, 288 |
| TseI | GCWGC | 4 cut(s) | 212, 215, 434, 596 |
| TspDTI | ATGAA | 2 cut(s) | 375, 386 |
| Vha464I | CTTAAG | 1 cut(s) | 29 |
| VneI | GTGCAC | 1 cut(s) | 18 |
| VpaK11BI | GGWCC | 1 cut(s) | 606 |
| XceI | RCATGY | 1 cut(s) | 39 |
| XspI | CTAG | 2 cut(s) | 122, 504 |