Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 431 |
| AccII | CGCG | 1 cut(s) | 376 |
| AciI | CCGC | 6 cut(s) | 146, 205, 266, 376, 402, 507 |
| AcsI | RAATTY | 1 cut(s) | 114 |
| AcvI | CACGTG | 1 cut(s) | 10 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 246, 292, 329, 506 |
| AflIII | ACRYGT | 1 cut(s) | 7 |
| AgsI | TTSAA | 4 cut(s) | 97, 340, 346, 462 |
| AjnI | CCWGG | 1 cut(s) | 499 |
| AluBI | AGCT | 3 cut(s) | 359, 449, 465 |
| AluI | AGCT | 3 cut(s) | 359, 449, 465 |
| Alw26I | GTCTC | 2 cut(s) | 221, 507 |
| Ama87I | CYCGRG | 1 cut(s) | 33 |
| ApeKI | GCWGC | 3 cut(s) | 250, 359, 449 |
| ApoI | RAATTY | 1 cut(s) | 114 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 333, 365 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 370 |
| AspLEI | GCGC | 1 cut(s) | 415 |
| AspS9I | GGNCC | 1 cut(s) | 423 |
| AsuHPI | GGTGA | 1 cut(s) | 169 |
| AvaI | CYCGRG | 1 cut(s) | 33 |
| AvaII | GGWCC | 1 cut(s) | 423 |
| BanII | GRGCYC | 2 cut(s) | 169, 300 |
| BbrPI | CACGTG | 1 cut(s) | 10 |
| BbsI | GAAGAC | 2 cut(s) | 242, 489 |
| BbvI | GCAGC | 3 cut(s) | 237, 346, 436 |
| BccI | CCATC | 5 cut(s) | 148, 323, 347, 378, 434 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 341, 375, 435, 469 |
| BciT130I | CCWGG | 1 cut(s) | 501 |
| BcoDI | GTCTC | 2 cut(s) | 221, 507 |
| BfaI | CTAG | 1 cut(s) | 324 |
| BfoI | RGCGCY | 1 cut(s) | 416 |
| BfuAI | ACCTGC | 1 cut(s) | 431 |
| BisI | GCNGC | 4 cut(s) | 251, 267, 360, 450 |
| BlsI | GCNGC | 4 cut(s) | 252, 268, 361, 451 |
| Bme1390I | CCNGG | 1 cut(s) | 501 |
| Bme18I | GGWCC | 1 cut(s) | 423 |
| BmeT110I | CYCGRG | 1 cut(s) | 33 |
| BmgT120I | GGNCC | 1 cut(s) | 423 |
| BmiI | GGNNCC | 3 cut(s) | 168, 297, 424 |
| BmrFI | CCNGG | 1 cut(s) | 501 |
| BpiI | GAAGAC | 2 cut(s) | 242, 489 |
| BsaAI | YACGTR | 1 cut(s) | 10 |
| BsaI | GGTCTC | 1 cut(s) | 221 |
| BsaJI | CCNNGG | 2 cut(s) | 170, 430 |
| BsaWI | WCCGGW | 1 cut(s) | 490 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 246, 292, 329, 506 |
| BseBI | CCWGG | 1 cut(s) | 501 |
| BseDI | CCNNGG | 2 cut(s) | 170, 430 |
| BseGI | GGATG | 1 cut(s) | 426 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 246, 292, 329, 506 |
| BseRI | GAGGAG | 1 cut(s) | 137 |
| BseXI | GCAGC | 3 cut(s) | 237, 346, 436 |
| BseYI | CCCAGC | 1 cut(s) | 281 |
| Bsh1236I | CGCG | 1 cut(s) | 376 |
| BsiHKCI | CYCGRG | 1 cut(s) | 33 |
| BsiSI | CCGG | 1 cut(s) | 491 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 246, 292, 329, 506 |
| BsmAI | GTCTC | 2 cut(s) | 221, 507 |
| Bso31I | GGTCTC | 1 cut(s) | 221 |
| BsoBI | CYCGRG | 1 cut(s) | 33 |
| Bsp1286I | GDGCHC | 2 cut(s) | 169, 300 |
| BspACI | CCGC | 6 cut(s) | 146, 205, 266, 376, 402, 507 |
| BspFNI | CGCG | 1 cut(s) | 376 |
| BspLI | GGNNCC | 3 cut(s) | 168, 297, 424 |
| BspMI | ACCTGC | 1 cut(s) | 431 |
| BspTNI | GGTCTC | 1 cut(s) | 221 |
| BssECI | CCNNGG | 2 cut(s) | 170, 430 |
| BssT1I | CCWWGG | 1 cut(s) | 170 |
| Bst2UI | CCWGG | 1 cut(s) | 501 |
| Bst4CI | ACNGT | 1 cut(s) | 52 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 10 |
| BstBAI | YACGTR | 1 cut(s) | 10 |
| BstC8I | GCNNGC | 4 cut(s) | 207, 454, 467, 471 |
| BstDEI | CTNAG | 1 cut(s) | 220 |
| BstF5I | GGATG | 1 cut(s) | 426 |
| BstFNI | CGCG | 1 cut(s) | 376 |
| BstH2I | RGCGCY | 1 cut(s) | 416 |
| BstHHI | GCGC | 1 cut(s) | 415 |
| BstMAI | GTCTC | 2 cut(s) | 221, 507 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 10, 446, 462 |
| BstNI | CCWGG | 1 cut(s) | 501 |
| BstSCI | CCNGG | 1 cut(s) | 499 |
| BstUI | CGCG | 1 cut(s) | 376 |
| BstV1I | GCAGC | 3 cut(s) | 237, 346, 436 |
| BstV2I | GAAGAC | 2 cut(s) | 242, 489 |
| BtsCI | GGATG | 1 cut(s) | 426 |
| BtsI | GCAGTG | 1 cut(s) | 45 |
| BtsIMutI | CAGTG | 1 cut(s) | 45 |
| BveI | ACCTGC | 1 cut(s) | 431 |
| Cac8I | GCNNGC | 4 cut(s) | 207, 454, 467, 471 |
| CfoI | GCGC | 1 cut(s) | 415 |
| Cfr13I | GGNCC | 1 cut(s) | 423 |
| CsiI | ACCWGGT | 1 cut(s) | 499 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 293, 328 |
| CviAII | CATG | 2 cut(s) | 254, 287 |
| DdeI | CTNAG | 1 cut(s) | 220 |
| Eco130I | CCWWGG | 1 cut(s) | 170 |
| Eco24I | GRGCYC | 2 cut(s) | 169, 300 |
| Eco31I | GGTCTC | 1 cut(s) | 221 |
| Eco47I | GGWCC | 1 cut(s) | 423 |
| Eco72I | CACGTG | 1 cut(s) | 10 |
| Eco88I | CYCGRG | 1 cut(s) | 33 |
| EcoRII | CCWGG | 1 cut(s) | 499 |
| EcoT14I | CCWWGG | 1 cut(s) | 170 |
| EcoT38I | GRGCYC | 2 cut(s) | 169, 300 |
| ErhI | CCWWGG | 1 cut(s) | 170 |
| FaeI | CATG | 2 cut(s) | 257, 290 |
| FaiI | YATR | 2 cut(s) | 255, 288 |
| FatI | CATG | 2 cut(s) | 253, 286 |
| FauI | CCCGC | 3 cut(s) | 198, 369, 395 |
| Fnu4HI | GCNGC | 4 cut(s) | 251, 267, 360, 450 |
| FokI | GGATG | 1 cut(s) | 413 |
| FriOI | GRGCYC | 2 cut(s) | 169, 300 |
| Fsp4HI | GCNGC | 4 cut(s) | 251, 267, 360, 450 |
| FspBI | CTAG | 1 cut(s) | 324 |
| GlaI | GCGC | 1 cut(s) | 414 |
| GluI | GCNGC | 4 cut(s) | 251, 267, 360, 450 |
| GsaI | CCCAGC | 1 cut(s) | 285 |
| HaeII | RGCGCY | 1 cut(s) | 416 |
| HapII | CCGG | 1 cut(s) | 491 |
| HhaI | GCGC | 1 cut(s) | 415 |
| Hin1II | CATG | 2 cut(s) | 257, 290 |
| Hin6I | GCGC | 1 cut(s) | 413 |
| HinP1I | GCGC | 1 cut(s) | 413 |
| HincII | GTYRAC | 1 cut(s) | 48 |
| HindII | GTYRAC | 1 cut(s) | 48 |
| HinfI | GANTC | 1 cut(s) | 485 |
| HpaI | GTTAAC | 1 cut(s) | 48 |
| HpaII | CCGG | 1 cut(s) | 491 |
| HphI | GGTGA | 1 cut(s) | 169 |
| Hpy166II | GTNNAC | 1 cut(s) | 48 |
| Hpy188I | TCNGA | 1 cut(s) | 113 |
| Hpy188III | TCNNGA | 1 cut(s) | 17 |
| Hpy8I | GTNNAC | 1 cut(s) | 48 |
| Hpy99I | CGWCG | 1 cut(s) | 353 |
| HpyAV | CCTTC | 3 cut(s) | 91, 124, 169 |
| HpyCH4III | ACNGT | 1 cut(s) | 52 |
| HpyCH4IV | ACGT | 2 cut(s) | 9, 348 |
| HpyCH4V | TGCA | 6 cut(s) | 4, 24, 253, 362, 473, 496 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 10, 446, 462 |
| HpyF3I | CTNAG | 1 cut(s) | 220 |
| HpySE526I | ACGT | 2 cut(s) | 9, 348 |
| Hsp92II | CATG | 2 cut(s) | 257, 290 |
| HspAI | GCGC | 1 cut(s) | 413 |
| KspAI | GTTAAC | 1 cut(s) | 48 |
| LmnI | GCTCC | 3 cut(s) | 172, 295, 356 |
| LpnPI | CCDG | 9 cut(s) | 248, 295, 380, 405, 426, 451, 486, 504, 513 |
| Lsp1109I | GCAGC | 3 cut(s) | 237, 346, 436 |
| MabI | ACCWGGT | 1 cut(s) | 499 |
| MaeI | CTAG | 1 cut(s) | 324 |
| MaeII | ACGT | 2 cut(s) | 9, 348 |
| MboII | GAAGA | 3 cut(s) | 139, 247, 494 |
| MhlI | GDGCHC | 2 cut(s) | 169, 300 |
| MluCI | AATT | 2 cut(s) | 114, 341 |
| MlyI | GAGTC | 1 cut(s) | 479 |
| MnlI | CCTC | 5 cut(s) | 115, 136, 193, 217, 440 |
| MroXI | GAANNNNTTC | 1 cut(s) | 370 |
| MseI | TTAA | 2 cut(s) | 29, 47 |
| MspI | CCGG | 1 cut(s) | 491 |
| MspR9I | CCNGG | 1 cut(s) | 501 |
| MvaI | CCWGG | 1 cut(s) | 501 |
| MvnI | CGCG | 1 cut(s) | 376 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 10, 446, 462 |
| NlaIII | CATG | 2 cut(s) | 257, 290 |
| NlaIV | GGNNCC | 3 cut(s) | 168, 297, 424 |
| PdmI | GAANNNNTTC | 1 cut(s) | 370 |
| PkrI | GCNGC | 4 cut(s) | 252, 268, 361, 451 |
| PleI | GAGTC | 1 cut(s) | 479 |
| PmaCI | CACGTG | 1 cut(s) | 10 |
| PmlI | CACGTG | 1 cut(s) | 10 |
| PpsI | GAGTC | 1 cut(s) | 479 |
| Ppu21I | YACGTR | 1 cut(s) | 10 |
| Psp6I | CCWGG | 1 cut(s) | 499 |
| PspCI | CACGTG | 1 cut(s) | 10 |
| PspFI | CCCAGC | 1 cut(s) | 281 |
| PspGI | CCWGG | 1 cut(s) | 499 |
| PspN4I | GGNNCC | 3 cut(s) | 168, 297, 424 |
| PspPI | GGNCC | 1 cut(s) | 423 |
| SaqAI | TTAA | 2 cut(s) | 29, 47 |
| SatI | GCNGC | 4 cut(s) | 251, 267, 360, 450 |
| Sau96I | GGNCC | 1 cut(s) | 423 |
| SchI | GAGTC | 1 cut(s) | 479 |
| ScrFI | CCNGG | 1 cut(s) | 501 |
| SduI | GDGCHC | 2 cut(s) | 169, 300 |
| SexAI | ACCWGGT | 1 cut(s) | 499 |
| SinI | GGWCC | 1 cut(s) | 423 |
| Sse9I | AATT | 2 cut(s) | 114, 341 |
| SsiI | CCGC | 6 cut(s) | 146, 205, 266, 376, 402, 507 |
| SspMI | CTAG | 1 cut(s) | 324 |
| StyD4I | CCNGG | 1 cut(s) | 499 |
| StyI | CCWWGG | 1 cut(s) | 170 |
| TaaI | ACNGT | 1 cut(s) | 52 |
| TaiI | ACGT | 2 cut(s) | 12, 351 |
| TaqI | TCGA | 2 cut(s) | 351, 445 |
| TaqII | GACCGA | 1 cut(s) | 422 |
| TasI | AATT | 2 cut(s) | 114, 341 |
| TauI | GCSGC | 1 cut(s) | 269 |
| Tru1I | TTAA | 2 cut(s) | 29, 47 |
| Tru9I | TTAA | 2 cut(s) | 29, 47 |
| TscAI | CASTG | 1 cut(s) | 45 |
| TseI | GCWGC | 3 cut(s) | 250, 359, 449 |
| TspDTI | ATGAA | 1 cut(s) | 197 |
| TspRI | CASTG | 1 cut(s) | 45 |
| VpaK11BI | GGWCC | 1 cut(s) | 423 |
| XapI | RAATTY | 1 cut(s) | 114 |
| XmnI | GAANNNNTTC | 1 cut(s) | 370 |
| XspI | CTAG | 1 cut(s) | 324 |