ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 177 - 236 | 2e-07 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 429 |
| Acc36I | ACCTGC | 1 cut(s) | 307 |
| AccB1I | GGYRCC | 1 cut(s) | 59 |
| AccII | CGCG | 1 cut(s) | 20 |
| AciI | CCGC | 3 cut(s) | 235, 454, 567 |
| AclWI | GGATC | 3 cut(s) | 111, 584, 597 |
| AcuI | CTGAAG | 1 cut(s) | 579 |
| AcyI | GRCGYC | 1 cut(s) | 398 |
| AfaI | GTAC | 1 cut(s) | 209 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 126, 176, 329, 512 |
| AflIII | ACRYGT | 1 cut(s) | 18 |
| AgsI | TTSAA | 3 cut(s) | 346, 523, 686 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 22 |
| AjiI | CACGTC | 1 cut(s) | 652 |
| AjnI | CCWGG | 2 cut(s) | 82, 479 |
| AluBI | AGCT | 3 cut(s) | 7, 149, 464 |
| AluI | AGCT | 3 cut(s) | 7, 149, 464 |
| Alw21I | GWGCWC | 1 cut(s) | 702 |
| AlwI | GGATC | 3 cut(s) | 111, 584, 597 |
| AoxI | GGCC | 5 cut(s) | 80, 415, 482, 660, 670 |
| ApeKI | GCWGC | 4 cut(s) | 4, 277, 293, 677 |
| AseI | ATTAAT | 1 cut(s) | 132 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 251 |
| AspLEI | GCGC | 2 cut(s) | 430, 646 |
| AspS9I | GGNCC | 1 cut(s) | 80 |
| AsuHPI | GGTGA | 2 cut(s) | 191, 364 |
| BaeGI | GKGCMC | 1 cut(s) | 64 |
| BamHI | GGATCC | 1 cut(s) | 589 |
| BanI | GGYRCC | 1 cut(s) | 59 |
| Bbv12I | GWGCWC | 1 cut(s) | 702 |
| BbvCI | CCTCAGC | 1 cut(s) | 639 |
| BbvI | GCAGC | 4 cut(s) | 16, 289, 305, 689 |
| BccI | CCATC | 2 cut(s) | 510, 530 |
| BceAI | ACGGC | 1 cut(s) | 657 |
| BciT130I | CCWGG | 2 cut(s) | 84, 481 |
| BclI | TGATCA | 1 cut(s) | 181 |
| BfaI | CTAG | 5 cut(s) | 150, 200, 372, 465, 714 |
| BfoI | RGCGCY | 1 cut(s) | 647 |
| BfuAI | ACCTGC | 1 cut(s) | 307 |
| BisI | GCNGC | 4 cut(s) | 5, 278, 294, 678 |
| BlsI | GCNGC | 4 cut(s) | 6, 279, 295, 679 |
| Bme1390I | CCNGG | 2 cut(s) | 84, 481 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 22 |
| BmgBI | CACGTC | 1 cut(s) | 652 |
| BmgT120I | GGNCC | 1 cut(s) | 80 |
| BmiI | GGNNCC | 6 cut(s) | 52, 61, 228, 321, 591, 711 |
| BmrFI | CCNGG | 2 cut(s) | 84, 481 |
| BmsI | GCATC | 1 cut(s) | 125 |
| BpmI | CTGGAG | 1 cut(s) | 463 |
| Bpu10I | CCTNAGC | 2 cut(s) | 222, 639 |
| BsaHI | GRCGYC | 1 cut(s) | 398 |
| BsaJI | CCNNGG | 3 cut(s) | 175, 494, 663 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 490, 520 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 126, 176, 329, 512 |
| Bse118I | RCCGGY | 1 cut(s) | 400 |
| Bse3DI | GCAATG | 2 cut(s) | 230, 699 |
| BseBI | CCWGG | 2 cut(s) | 84, 481 |
| BseDI | CCNNGG | 3 cut(s) | 175, 494, 663 |
| BseGI | GGATG | 2 cut(s) | 116, 521 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 126, 176, 329, 512 |
| BseMI | GCAATG | 2 cut(s) | 230, 699 |
| BseMII | CTCAG | 2 cut(s) | 236, 630 |
| BseSI | GKGCMC | 1 cut(s) | 64 |
| BseXI | GCAGC | 4 cut(s) | 16, 289, 305, 689 |
| BsgI | GTGCAG | 3 cut(s) | 296, 312, 696 |
| Bsh1236I | CGCG | 1 cut(s) | 20 |
| BshFI | GGCC | 5 cut(s) | 82, 417, 484, 662, 672 |
| BshNI | GGYRCC | 1 cut(s) | 59 |
| BsiHKAI | GWGCWC | 1 cut(s) | 702 |
| BsiSI | CCGG | 1 cut(s) | 401 |
| BslFI | GGGAC | 3 cut(s) | 29, 173, 486 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 126, 176, 329, 512 |
| BsmFI | GGGAC | 3 cut(s) | 29, 173, 486 |
| BsnI | GGCC | 5 cut(s) | 82, 417, 484, 662, 672 |
| Bsp1286I | GDGCHC | 2 cut(s) | 64, 702 |
| Bsp143I | GATC | 3 cut(s) | 103, 181, 589 |
| Bsp19I | CCATGG | 2 cut(s) | 175, 663 |
| BspACI | CCGC | 3 cut(s) | 235, 454, 567 |
| BspANI | GGCC | 5 cut(s) | 82, 417, 484, 662, 672 |
| BspCNI | CTCAG | 2 cut(s) | 235, 631 |
| BspFNI | CGCG | 1 cut(s) | 20 |
| BspLI | GGNNCC | 6 cut(s) | 52, 61, 228, 321, 591, 711 |
| BspMI | ACCTGC | 1 cut(s) | 307 |
| BspPI | GGATC | 3 cut(s) | 111, 584, 597 |
| BspT107I | GGYRCC | 1 cut(s) | 59 |
| BsrDI | GCAATG | 2 cut(s) | 230, 699 |
| BsrFI | RCCGGY | 1 cut(s) | 400 |
| BssAI | RCCGGY | 1 cut(s) | 400 |
| BssECI | CCNNGG | 3 cut(s) | 175, 494, 663 |
| BssMI | GATC | 3 cut(s) | 103, 181, 589 |
| BssNI | GRCGYC | 1 cut(s) | 398 |
| BssT1I | CCWWGG | 3 cut(s) | 175, 494, 663 |
| Bst2UI | CCWGG | 2 cut(s) | 84, 481 |
| Bst6I | CTCTTC | 1 cut(s) | 545 |
| BstACI | GRCGYC | 1 cut(s) | 398 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 410, 436, 674 |
| BstC8I | GCNNGC | 6 cut(s) | 402, 415, 426, 441, 670, 708 |
| BstDEI | CTNAG | 2 cut(s) | 222, 639 |
| BstDSI | CCRYGG | 2 cut(s) | 175, 663 |
| BstEII | GGTNACC | 1 cut(s) | 154 |
| BstF5I | GGATG | 2 cut(s) | 116, 521 |
| BstFNI | CGCG | 1 cut(s) | 20 |
| BstH2I | RGCGCY | 1 cut(s) | 647 |
| BstHHI | GCGC | 2 cut(s) | 430, 646 |
| BstKTI | GATC | 3 cut(s) | 106, 184, 592 |
| BstMBI | GATC | 3 cut(s) | 103, 181, 589 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 410, 436, 630, 674 |
| BstNI | CCWGG | 2 cut(s) | 84, 481 |
| BstPI | GGTNACC | 1 cut(s) | 154 |
| BstSCI | CCNGG | 2 cut(s) | 82, 479 |
| BstSLI | GKGCMC | 1 cut(s) | 64 |
| BstUI | CGCG | 1 cut(s) | 20 |
| BstV1I | GCAGC | 4 cut(s) | 16, 289, 305, 689 |
| BstX2I | RGATCY | 1 cut(s) | 589 |
| BstYI | RGATCY | 1 cut(s) | 589 |
| BsuRI | GGCC | 5 cut(s) | 82, 417, 484, 662, 672 |
| BtgI | CCRYGG | 2 cut(s) | 175, 663 |
| BtrI | CACGTC | 1 cut(s) | 652 |
| BtsCI | GGATG | 2 cut(s) | 116, 521 |
| BtsI | GCAGTG | 1 cut(s) | 303 |
| BtsIMutI | CAGTG | 2 cut(s) | 303, 456 |
| BveI | ACCTGC | 1 cut(s) | 307 |
| Cac8I | GCNNGC | 6 cut(s) | 402, 415, 426, 441, 670, 708 |
| CfoI | GCGC | 2 cut(s) | 430, 646 |
| Cfr10I | RCCGGY | 1 cut(s) | 400 |
| Cfr13I | GGNCC | 1 cut(s) | 80 |
| CseI | GACGC | 3 cut(s) | 26, 406, 483 |
| Csp6I | GTAC | 1 cut(s) | 208 |
| CviAII | CATG | 8 cut(s) | 72, 88, 142, 176, 185, 281, 394, 664 |
| CviQI | GTAC | 1 cut(s) | 208 |
| DdeI | CTNAG | 2 cut(s) | 222, 639 |
| DpnI | GATC | 3 cut(s) | 105, 183, 591 |
| DpnII | GATC | 3 cut(s) | 103, 181, 589 |
| DriI | GACNNNNNGTC | 1 cut(s) | 22 |
| Eam1104I | CTCTTC | 1 cut(s) | 545 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 22 |
| EarI | CTCTTC | 1 cut(s) | 545 |
| Eco130I | CCWWGG | 3 cut(s) | 175, 494, 663 |
| Eco147I | AGGCCT | 1 cut(s) | 484 |
| Eco57I | CTGAAG | 1 cut(s) | 579 |
| Eco91I | GGTNACC | 1 cut(s) | 154 |
| EcoO109I | RGGNCCY | 1 cut(s) | 80 |
| EcoO65I | GGTNACC | 1 cut(s) | 154 |
| EcoRII | CCWGG | 2 cut(s) | 82, 479 |
| EcoT14I | CCWWGG | 3 cut(s) | 175, 494, 663 |
| ErhI | CCWWGG | 3 cut(s) | 175, 494, 663 |
| FaeI | CATG | 8 cut(s) | 75, 91, 145, 179, 188, 284, 397, 667 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 577, 609 |
| FaqI | GGGAC | 3 cut(s) | 29, 173, 486 |
| FatI | CATG | 8 cut(s) | 71, 87, 141, 175, 184, 280, 393, 663 |
| FbaI | TGATCA | 1 cut(s) | 181 |
| Fnu4HI | GCNGC | 4 cut(s) | 5, 278, 294, 678 |
| FokI | GGATG | 2 cut(s) | 103, 528 |
| Fsp4HI | GCNGC | 4 cut(s) | 5, 278, 294, 678 |
| FspAI | RTGCGCAY | 1 cut(s) | 429 |
| FspBI | CTAG | 5 cut(s) | 150, 200, 372, 465, 714 |
| FspI | TGCGCA | 1 cut(s) | 429 |
| GlaI | GCGC | 2 cut(s) | 429, 645 |
| GluI | GCNGC | 4 cut(s) | 5, 278, 294, 678 |
| GsuI | CTGGAG | 1 cut(s) | 463 |
| HaeII | RGCGCY | 1 cut(s) | 647 |
| HaeIII | GGCC | 5 cut(s) | 82, 417, 484, 662, 672 |
| HapII | CCGG | 1 cut(s) | 401 |
| HgaI | GACGC | 3 cut(s) | 26, 406, 483 |
| HhaI | GCGC | 2 cut(s) | 430, 646 |
| Hin1I | GRCGYC | 1 cut(s) | 398 |
| Hin1II | CATG | 8 cut(s) | 75, 91, 145, 179, 188, 284, 397, 667 |
| Hin6I | GCGC | 2 cut(s) | 428, 644 |
| HinP1I | GCGC | 2 cut(s) | 428, 644 |
| HincII | GTYRAC | 1 cut(s) | 304 |
| HindII | GTYRAC | 1 cut(s) | 304 |
| HinfI | GANTC | 1 cut(s) | 499 |
| HpaII | CCGG | 1 cut(s) | 401 |
| HphI | GGTGA | 2 cut(s) | 191, 364 |
| Hpy166II | GTNNAC | 4 cut(s) | 43, 69, 208, 304 |
| Hpy188I | TCNGA | 3 cut(s) | 246, 339, 549 |
| Hpy188III | TCNNGA | 1 cut(s) | 262 |
| Hpy8I | GTNNAC | 4 cut(s) | 43, 69, 208, 304 |
| HpyAV | CCTTC | 2 cut(s) | 211, 603 |
| HpyCH4IV | ACGT | 2 cut(s) | 445, 651 |
| HpyCH4V | TGCA | 7 cut(s) | 4, 277, 293, 413, 443, 677, 692 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 410, 436, 630, 674 |
| HpyF3I | CTNAG | 2 cut(s) | 222, 639 |
| HpySE526I | ACGT | 2 cut(s) | 445, 651 |
| Hsp92I | GRCGYC | 1 cut(s) | 398 |
| Hsp92II | CATG | 8 cut(s) | 75, 91, 145, 179, 188, 284, 397, 667 |
| HspAI | GCGC | 2 cut(s) | 428, 644 |
| KroI | GCCGGC | 1 cut(s) | 400 |
| KroNI | GCCGGC | 1 cut(s) | 402 |
| Ksp22I | TGATCA | 1 cut(s) | 181 |
| Kzo9I | GATC | 3 cut(s) | 103, 181, 589 |
| LmnI | GCTCC | 4 cut(s) | 232, 482, 697, 715 |
| Lsp1109I | GCAGC | 4 cut(s) | 16, 289, 305, 689 |
| LweI | GCATC | 1 cut(s) | 125 |
| MaeI | CTAG | 5 cut(s) | 150, 200, 372, 465, 714 |
| MaeII | ACGT | 2 cut(s) | 445, 651 |
| MaeIII | GTNAC | 2 cut(s) | 154, 456 |
| MalI | GATC | 3 cut(s) | 105, 183, 591 |
| MboI | GATC | 3 cut(s) | 103, 181, 589 |
| MboII | GAAGA | 2 cut(s) | 367, 562 |
| MfeI | CAATTG | 1 cut(s) | 627 |
| MflI | RGATCY | 1 cut(s) | 589 |
| MhlI | GDGCHC | 2 cut(s) | 64, 702 |
| MluCI | AATT | 4 cut(s) | 251, 360, 408, 627 |
| MluI | ACGCGT | 1 cut(s) | 18 |
| MlyI | GAGTC | 1 cut(s) | 493 |
| MnlI | CCTC | 7 cut(s) | 177, 495, 516, 605, 634, 652, 710 |
| MroNI | GCCGGC | 1 cut(s) | 400 |
| MroXI | GAANNNNTTC | 1 cut(s) | 251 |
| MseI | TTAA | 1 cut(s) | 132 |
| MspI | CCGG | 1 cut(s) | 401 |
| MspR9I | CCNGG | 2 cut(s) | 84, 481 |
| MunI | CAATTG | 1 cut(s) | 627 |
| MvaI | CCWGG | 2 cut(s) | 84, 481 |
| MvnI | CGCG | 1 cut(s) | 20 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 410, 436, 630, 674 |
| NaeI | GCCGGC | 1 cut(s) | 402 |
| NcoI | CCATGG | 2 cut(s) | 175, 663 |
| NdeII | GATC | 3 cut(s) | 103, 181, 589 |
| NgoMIV | GCCGGC | 1 cut(s) | 400 |
| NlaIII | CATG | 8 cut(s) | 75, 91, 145, 179, 188, 284, 397, 667 |
| NlaIV | GGNNCC | 6 cut(s) | 52, 61, 228, 321, 591, 711 |
| NmuCI | GTSAC | 1 cut(s) | 456 |
| NsbI | TGCGCA | 1 cut(s) | 429 |
| PceI | AGGCCT | 1 cut(s) | 484 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 103 |
| PdiI | GCCGGC | 1 cut(s) | 402 |
| PdmI | GAANNNNTTC | 1 cut(s) | 251 |
| PkrI | GCNGC | 4 cut(s) | 6, 279, 295, 679 |
| PleI | GAGTC | 1 cut(s) | 493 |
| PpsI | GAGTC | 1 cut(s) | 493 |
| PshBI | ATTAAT | 1 cut(s) | 132 |
| Psp6I | CCWGG | 2 cut(s) | 82, 479 |
| PspEI | GGTNACC | 1 cut(s) | 154 |
| PspGI | CCWGG | 2 cut(s) | 82, 479 |
| PspN4I | GGNNCC | 6 cut(s) | 52, 61, 228, 321, 591, 711 |
| PspPI | GGNCC | 1 cut(s) | 80 |
| PsuI | RGATCY | 1 cut(s) | 589 |
| RsaI | GTAC | 1 cut(s) | 209 |
| RsaNI | GTAC | 1 cut(s) | 208 |
| SaqAI | TTAA | 1 cut(s) | 132 |
| SatI | GCNGC | 4 cut(s) | 5, 278, 294, 678 |
| Sau3AI | GATC | 3 cut(s) | 103, 181, 589 |
| Sau96I | GGNCC | 1 cut(s) | 80 |
| SchI | GAGTC | 1 cut(s) | 493 |
| ScrFI | CCNGG | 2 cut(s) | 84, 481 |
| SduI | GDGCHC | 2 cut(s) | 64, 702 |
| SfaNI | GCATC | 1 cut(s) | 125 |
| Sse9I | AATT | 4 cut(s) | 251, 360, 408, 627 |
| SseBI | AGGCCT | 1 cut(s) | 484 |
| SsiI | CCGC | 3 cut(s) | 235, 454, 567 |
| SspMI | CTAG | 5 cut(s) | 150, 200, 372, 465, 714 |
| StuI | AGGCCT | 1 cut(s) | 484 |
| StyD4I | CCNGG | 2 cut(s) | 82, 479 |
| StyI | CCWWGG | 3 cut(s) | 175, 494, 663 |
| TaiI | ACGT | 2 cut(s) | 448, 654 |
| TaqI | TCGA | 2 cut(s) | 106, 261 |
| TasI | AATT | 4 cut(s) | 251, 360, 408, 627 |
| TatI | WGTACW | 1 cut(s) | 207 |
| Tru1I | TTAA | 1 cut(s) | 132 |
| Tru9I | TTAA | 1 cut(s) | 132 |
| TscAI | CASTG | 2 cut(s) | 303, 456 |
| TseFI | GTSAC | 1 cut(s) | 456 |
| TseI | GCWGC | 4 cut(s) | 4, 277, 293, 677 |
| Tsp45I | GTSAC | 1 cut(s) | 456 |
| TspDTI | ATGAA | 2 cut(s) | 130, 568 |
| TspRI | CASTG | 2 cut(s) | 303, 456 |
| VspI | ATTAAT | 1 cut(s) | 132 |
| XmnI | GAANNNNTTC | 1 cut(s) | 251 |
| XspI | CTAG | 5 cut(s) | 150, 200, 372, 465, 714 |