Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| EVE | PF01878 | 6 - 134 | 3.6e-37 | EVE domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 173 |
| AccII | CGCG | 1 cut(s) | 251 |
| AciI | CCGC | 3 cut(s) | 184, 187, 251 |
| AcyI | GRCGYC | 2 cut(s) | 174, 198 |
| AdeI | CACNNNGTG | 1 cut(s) | 90 |
| AfaI | GTAC | 1 cut(s) | 125 |
| AgsI | TTSAA | 3 cut(s) | 298, 391, 419 |
| AjnI | CCWGG | 1 cut(s) | 40 |
| Alw26I | GTCTC | 1 cut(s) | 326 |
| AoxI | GGCC | 2 cut(s) | 114, 284 |
| ApeKI | GCWGC | 2 cut(s) | 68, 346 |
| AspLEI | GCGC | 2 cut(s) | 176, 251 |
| AspS9I | GGNCC | 2 cut(s) | 61, 115 |
| AsuHPI | GGTGA | 3 cut(s) | 76, 434, 467 |
| AvaII | GGWCC | 1 cut(s) | 61 |
| BanI | GGYRCC | 1 cut(s) | 173 |
| BbvI | GCAGC | 2 cut(s) | 80, 358 |
| BccI | CCATC | 3 cut(s) | 89, 239, 419 |
| BciT130I | CCWGG | 1 cut(s) | 42 |
| BcoDI | GTCTC | 1 cut(s) | 326 |
| BfoI | RGCGCY | 1 cut(s) | 177 |
| BisI | GCNGC | 3 cut(s) | 69, 187, 347 |
| BlsI | GCNGC | 3 cut(s) | 70, 188, 348 |
| Bme1390I | CCNGG | 1 cut(s) | 42 |
| Bme18I | GGWCC | 1 cut(s) | 61 |
| BmgT120I | GGNCC | 2 cut(s) | 61, 115 |
| BmiI | GGNNCC | 1 cut(s) | 175 |
| BmrFI | CCNGG | 1 cut(s) | 42 |
| BmsI | GCATC | 1 cut(s) | 90 |
| BpuEI | CTTGAG | 2 cut(s) | 113, 308 |
| BsaHI | GRCGYC | 2 cut(s) | 174, 198 |
| BsaI | GGTCTC | 1 cut(s) | 326 |
| BsaJI | CCNNGG | 1 cut(s) | 350 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 368, 398 |
| Bse118I | RCCGGY | 2 cut(s) | 286, 367 |
| BseBI | CCWGG | 1 cut(s) | 42 |
| BseDI | CCNNGG | 1 cut(s) | 350 |
| BseGI | GGATG | 2 cut(s) | 100, 385 |
| BseRI | GAGGAG | 2 cut(s) | 295, 329 |
| BseXI | GCAGC | 2 cut(s) | 80, 358 |
| Bsh1236I | CGCG | 1 cut(s) | 251 |
| Bsh1285I | CGRYCG | 1 cut(s) | 210 |
| BshFI | GGCC | 2 cut(s) | 116, 286 |
| BshNI | GGYRCC | 1 cut(s) | 173 |
| BsiEI | CGRYCG | 1 cut(s) | 210 |
| BsiSI | CCGG | 3 cut(s) | 171, 287, 368 |
| BsmAI | GTCTC | 1 cut(s) | 326 |
| BsnI | GGCC | 2 cut(s) | 116, 286 |
| Bso31I | GGTCTC | 1 cut(s) | 326 |
| BspACI | CCGC | 3 cut(s) | 184, 187, 251 |
| BspANI | GGCC | 2 cut(s) | 116, 286 |
| BspFNI | CGCG | 1 cut(s) | 251 |
| BspLI | GGNNCC | 1 cut(s) | 175 |
| BspT107I | GGYRCC | 1 cut(s) | 173 |
| BspTNI | GGTCTC | 1 cut(s) | 326 |
| BsrFI | RCCGGY | 2 cut(s) | 286, 367 |
| BssAI | RCCGGY | 2 cut(s) | 286, 367 |
| BssECI | CCNNGG | 1 cut(s) | 350 |
| BssNI | GRCGYC | 2 cut(s) | 174, 198 |
| Bst2UI | CCWGG | 1 cut(s) | 42 |
| Bst4CI | ACNGT | 1 cut(s) | 208 |
| BstACI | GRCGYC | 2 cut(s) | 174, 198 |
| BstC8I | GCNNGC | 2 cut(s) | 114, 184 |
| BstF5I | GGATG | 2 cut(s) | 100, 385 |
| BstFNI | CGCG | 1 cut(s) | 251 |
| BstH2I | RGCGCY | 1 cut(s) | 177 |
| BstHHI | GCGC | 2 cut(s) | 176, 251 |
| BstMAI | GTCTC | 1 cut(s) | 326 |
| BstMCI | CGRYCG | 1 cut(s) | 210 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 22, 195, 352 |
| BstNI | CCWGG | 1 cut(s) | 42 |
| BstSCI | CCNGG | 1 cut(s) | 40 |
| BstUI | CGCG | 1 cut(s) | 251 |
| BstV1I | GCAGC | 2 cut(s) | 80, 358 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 48 |
| BsuRI | GGCC | 2 cut(s) | 116, 286 |
| BtsCI | GGATG | 2 cut(s) | 100, 385 |
| Cac8I | GCNNGC | 2 cut(s) | 114, 184 |
| CfoI | GCGC | 2 cut(s) | 176, 251 |
| Cfr10I | RCCGGY | 2 cut(s) | 286, 367 |
| Cfr13I | GGNCC | 2 cut(s) | 61, 115 |
| CseI | GACGC | 1 cut(s) | 187 |
| Csp6I | GTAC | 1 cut(s) | 124 |
| CviAII | CATG | 1 cut(s) | 136 |
| CviJI | RGCY | 9 cut(s) | 25, 40, 71, 116, 141, 182, 286, 349, 355 |
| CviKI_1 | RGCY | 9 cut(s) | 25, 40, 71, 116, 141, 182, 286, 349, 355 |
| CviQI | GTAC | 1 cut(s) | 124 |
| DinI | GGCGCC | 1 cut(s) | 175 |
| DraIII | CACNNNGTG | 1 cut(s) | 90 |
| Eco31I | GGTCTC | 1 cut(s) | 326 |
| Eco47I | GGWCC | 1 cut(s) | 61 |
| EcoRII | CCWGG | 1 cut(s) | 40 |
| EgeI | GGCGCC | 1 cut(s) | 175 |
| EheI | GGCGCC | 1 cut(s) | 175 |
| FaeI | CATG | 1 cut(s) | 139 |
| FaiI | YATR | 2 cut(s) | 137, 191 |
| FatI | CATG | 1 cut(s) | 135 |
| FauI | CCCGC | 1 cut(s) | 191 |
| Fnu4HI | GCNGC | 3 cut(s) | 69, 187, 347 |
| FokI | GGATG | 2 cut(s) | 107, 392 |
| Fsp4HI | GCNGC | 3 cut(s) | 69, 187, 347 |
| GlaI | GCGC | 2 cut(s) | 175, 250 |
| GluI | GCNGC | 3 cut(s) | 69, 187, 347 |
| HaeII | RGCGCY | 1 cut(s) | 177 |
| HaeIII | GGCC | 2 cut(s) | 116, 286 |
| HapII | CCGG | 3 cut(s) | 171, 287, 368 |
| HgaI | GACGC | 1 cut(s) | 187 |
| HhaI | GCGC | 2 cut(s) | 176, 251 |
| Hin1I | GRCGYC | 2 cut(s) | 174, 198 |
| Hin1II | CATG | 1 cut(s) | 139 |
| Hin6I | GCGC | 2 cut(s) | 174, 249 |
| HinP1I | GCGC | 2 cut(s) | 174, 249 |
| HincII | GTYRAC | 1 cut(s) | 292 |
| HindII | GTYRAC | 1 cut(s) | 292 |
| HinfI | GANTC | 2 cut(s) | 99, 449 |
| HpaII | CCGG | 3 cut(s) | 171, 287, 368 |
| HphI | GGTGA | 3 cut(s) | 76, 434, 467 |
| Hpy166II | GTNNAC | 1 cut(s) | 292 |
| Hpy188I | TCNGA | 3 cut(s) | 30, 229, 376 |
| Hpy188III | TCNNGA | 1 cut(s) | 202 |
| Hpy8I | GTNNAC | 1 cut(s) | 292 |
| Hpy99I | CGWCG | 1 cut(s) | 203 |
| HpyAV | CCTTC | 7 cut(s) | 224, 230, 256, 292, 301, 413, 455 |
| HpyCH4III | ACNGT | 1 cut(s) | 208 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 22, 195, 352 |
| Hsp92I | GRCGYC | 2 cut(s) | 174, 198 |
| Hsp92II | CATG | 1 cut(s) | 139 |
| HspAI | GCGC | 2 cut(s) | 174, 249 |
| KasI | GGCGCC | 1 cut(s) | 173 |
| LpnPI | CCDG | 8 cut(s) | 27, 54, 98, 131, 184, 300, 381, 438 |
| Lsp1109I | GCAGC | 2 cut(s) | 80, 358 |
| LweI | GCATC | 1 cut(s) | 90 |
| MaeIII | GTNAC | 1 cut(s) | 202 |
| MboII | GAAGA | 2 cut(s) | 151, 452 |
| Mly113I | GGCGCC | 1 cut(s) | 174 |
| MlyI | GAGTC | 1 cut(s) | 108 |
| MspI | CCGG | 3 cut(s) | 171, 287, 368 |
| MspR9I | CCNGG | 1 cut(s) | 42 |
| MvaI | CCWGG | 1 cut(s) | 42 |
| MvnI | CGCG | 1 cut(s) | 251 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 22, 195, 352 |
| NarI | GGCGCC | 1 cut(s) | 174 |
| NlaIII | CATG | 1 cut(s) | 139 |
| NlaIV | GGNNCC | 1 cut(s) | 175 |
| NmeAIII | GCCGAG | 1 cut(s) | 375 |
| NmuCI | GTSAC | 1 cut(s) | 202 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 207 |
| PfeI | GAWTC | 1 cut(s) | 449 |
| PkrI | GCNGC | 3 cut(s) | 70, 188, 348 |
| PleI | GAGTC | 1 cut(s) | 107 |
| PluTI | GGCGCC | 1 cut(s) | 177 |
| PpsI | GAGTC | 1 cut(s) | 107 |
| Psp6I | CCWGG | 1 cut(s) | 40 |
| PspGI | CCWGG | 1 cut(s) | 40 |
| PspN4I | GGNNCC | 1 cut(s) | 175 |
| PspPI | GGNCC | 2 cut(s) | 61, 115 |
| RsaI | GTAC | 1 cut(s) | 125 |
| RsaNI | GTAC | 1 cut(s) | 124 |
| SatI | GCNGC | 3 cut(s) | 69, 187, 347 |
| Sau96I | GGNCC | 2 cut(s) | 61, 115 |
| SchI | GAGTC | 1 cut(s) | 108 |
| ScrFI | CCNGG | 1 cut(s) | 42 |
| SetI | ASST | 5 cut(s) | 129, 153, 241, 412, 424 |
| SfaNI | GCATC | 1 cut(s) | 90 |
| SfoI | GGCGCC | 1 cut(s) | 175 |
| SinI | GGWCC | 1 cut(s) | 61 |
| SmlI | CTYRAG | 2 cut(s) | 128, 323 |
| SmoI | CTYRAG | 2 cut(s) | 128, 323 |
| SsiI | CCGC | 3 cut(s) | 184, 187, 251 |
| SspDI | GGCGCC | 1 cut(s) | 173 |
| StyD4I | CCNGG | 1 cut(s) | 40 |
| TaaI | ACNGT | 1 cut(s) | 208 |
| TaqI | TCGA | 1 cut(s) | 144 |
| TauI | GCSGC | 1 cut(s) | 189 |
| TfiI | GAWTC | 1 cut(s) | 449 |
| TseFI | GTSAC | 1 cut(s) | 202 |
| TseI | GCWGC | 2 cut(s) | 68, 346 |
| Tsp45I | GTSAC | 1 cut(s) | 202 |
| TspDTI | ATGAA | 3 cut(s) | 320, 462, 474 |
| VpaK11BI | GGWCC | 1 cut(s) | 61 |