Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 2 - 79 | 3.8e-12 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 126 |
| AcsI | RAATTY | 1 cut(s) | 401 |
| AfaI | GTAC | 3 cut(s) | 189, 322, 328 |
| AflIII | ACRYGT | 1 cut(s) | 283 |
| AgsI | TTSAA | 4 cut(s) | 11, 296, 386, 401 |
| AhlI | ACTAGT | 1 cut(s) | 323 |
| AluBI | AGCT | 1 cut(s) | 14 |
| AluI | AGCT | 1 cut(s) | 14 |
| Alw26I | GTCTC | 3 cut(s) | 65, 272, 449 |
| AlwI | GGATC | 1 cut(s) | 126 |
| AoxI | GGCC | 1 cut(s) | 25 |
| ApeKI | GCWGC | 1 cut(s) | 83 |
| ApoI | RAATTY | 1 cut(s) | 401 |
| AsuHPI | GGTGA | 1 cut(s) | 103 |
| BbvI | GCAGC | 1 cut(s) | 70 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 65, 99 |
| BclI | TGATCA | 1 cut(s) | 55 |
| BcoDI | GTCTC | 3 cut(s) | 65, 272, 449 |
| BcuI | ACTAGT | 1 cut(s) | 323 |
| BfaI | CTAG | 3 cut(s) | 101, 243, 324 |
| BglII | AGATCT | 1 cut(s) | 334 |
| BisI | GCNGC | 1 cut(s) | 84 |
| BlsI | GCNGC | 1 cut(s) | 85 |
| BmcAI | AGTACT | 1 cut(s) | 328 |
| BmsI | GCATC | 1 cut(s) | 406 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 12, 44 |
| BpuEI | CTTGAG | 1 cut(s) | 315 |
| BsaI | GGTCTC | 1 cut(s) | 65 |
| BsaJI | CCNNGG | 2 cut(s) | 46, 373 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 446, 476 |
| Bse118I | RCCGGY | 1 cut(s) | 23 |
| BseDI | CCNNGG | 2 cut(s) | 46, 373 |
| BseRI | GAGGAG | 1 cut(s) | 290 |
| BseXI | GCAGC | 1 cut(s) | 70 |
| BshFI | GGCC | 1 cut(s) | 27 |
| BsiSI | CCGG | 1 cut(s) | 24 |
| BsmAI | GTCTC | 3 cut(s) | 65, 272, 449 |
| BsmI | GAATGC | 1 cut(s) | 378 |
| BsnI | GGCC | 1 cut(s) | 27 |
| Bso31I | GGTCTC | 1 cut(s) | 65 |
| Bsp1407I | TGTACA | 1 cut(s) | 187 |
| Bsp143I | GATC | 4 cut(s) | 55, 118, 334, 429 |
| BspANI | GGCC | 1 cut(s) | 27 |
| BspPI | GGATC | 1 cut(s) | 126 |
| BspTNI | GGTCTC | 1 cut(s) | 65 |
| BsrFI | RCCGGY | 1 cut(s) | 23 |
| BsrGI | TGTACA | 1 cut(s) | 187 |
| BssAI | RCCGGY | 1 cut(s) | 23 |
| BssECI | CCNNGG | 2 cut(s) | 46, 373 |
| BssMI | GATC | 4 cut(s) | 55, 118, 334, 429 |
| BssT1I | CCWWGG | 2 cut(s) | 46, 373 |
| Bst4CI | ACNGT | 1 cut(s) | 460 |
| Bst6I | CTCTTC | 1 cut(s) | 384 |
| BstAUI | TGTACA | 1 cut(s) | 187 |
| BstC8I | GCNNGC | 2 cut(s) | 25, 168 |
| BstKTI | GATC | 4 cut(s) | 58, 121, 337, 432 |
| BstMAI | GTCTC | 3 cut(s) | 65, 272, 449 |
| BstMBI | GATC | 4 cut(s) | 55, 118, 334, 429 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 20 |
| BstNSI | RCATGY | 1 cut(s) | 287 |
| BstV1I | GCAGC | 1 cut(s) | 70 |
| BstX2I | RGATCY | 2 cut(s) | 118, 334 |
| BstYI | RGATCY | 2 cut(s) | 118, 334 |
| BsuRI | GGCC | 1 cut(s) | 27 |
| BtsI | GCAGTG | 1 cut(s) | 455 |
| BtsIMutI | CAGTG | 2 cut(s) | 455, 465 |
| Cac8I | GCNNGC | 2 cut(s) | 25, 168 |
| Cfr10I | RCCGGY | 1 cut(s) | 23 |
| Csp6I | GTAC | 3 cut(s) | 188, 321, 327 |
| CviAII | CATG | 1 cut(s) | 284 |
| CviJI | RGCY | 5 cut(s) | 14, 23, 27, 51, 514 |
| CviKI_1 | RGCY | 5 cut(s) | 14, 23, 27, 51, 514 |
| CviQI | GTAC | 3 cut(s) | 188, 321, 327 |
| DpnI | GATC | 4 cut(s) | 57, 120, 336, 431 |
| DpnII | GATC | 4 cut(s) | 55, 118, 334, 429 |
| Eam1104I | CTCTTC | 1 cut(s) | 384 |
| EarI | CTCTTC | 1 cut(s) | 384 |
| Eco130I | CCWWGG | 2 cut(s) | 46, 373 |
| Eco31I | GGTCTC | 1 cut(s) | 65 |
| Eco32I | GATATC | 1 cut(s) | 370 |
| EcoRI | GAATTC | 1 cut(s) | 401 |
| EcoRV | GATATC | 1 cut(s) | 370 |
| EcoT14I | CCWWGG | 2 cut(s) | 46, 373 |
| EcoT22I | ATGCAT | 1 cut(s) | 421 |
| ErhI | CCWWGG | 2 cut(s) | 46, 373 |
| FaeI | CATG | 1 cut(s) | 287 |
| FaiI | YATR | 9 cut(s) | 54, 160, 186, 285, 309, 347, 434, 436, 483 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 366, 398 |
| FatI | CATG | 1 cut(s) | 283 |
| FbaI | TGATCA | 1 cut(s) | 55 |
| Fnu4HI | GCNGC | 1 cut(s) | 84 |
| Fsp4HI | GCNGC | 1 cut(s) | 84 |
| FspBI | CTAG | 3 cut(s) | 101, 243, 324 |
| GluI | GCNGC | 1 cut(s) | 84 |
| HaeIII | GGCC | 1 cut(s) | 27 |
| HapII | CCGG | 1 cut(s) | 24 |
| Hin1II | CATG | 1 cut(s) | 287 |
| HincII | GTYRAC | 1 cut(s) | 64 |
| HindII | GTYRAC | 1 cut(s) | 64 |
| HindIII | AAGCTT | 1 cut(s) | 12 |
| HinfI | GANTC | 1 cut(s) | 314 |
| HpaII | CCGG | 1 cut(s) | 24 |
| HphI | GGTGA | 1 cut(s) | 103 |
| Hpy166II | GTNNAC | 2 cut(s) | 64, 94 |
| Hpy188I | TCNGA | 2 cut(s) | 127, 343 |
| Hpy188III | TCNNGA | 4 cut(s) | 203, 296, 332, 383 |
| Hpy8I | GTNNAC | 2 cut(s) | 64, 94 |
| HpyCH4III | ACNGT | 1 cut(s) | 460 |
| HpyCH4V | TGCA | 6 cut(s) | 153, 166, 419, 448, 473, 508 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 20 |
| Hsp92II | CATG | 1 cut(s) | 287 |
| KroI | GCCGGC | 1 cut(s) | 23 |
| KroNI | GCCGGC | 1 cut(s) | 25 |
| Ksp22I | TGATCA | 1 cut(s) | 55 |
| Kzo9I | GATC | 4 cut(s) | 55, 118, 334, 429 |
| LpnPI | CCDG | 2 cut(s) | 37, 419 |
| Lsp1109I | GCAGC | 1 cut(s) | 70 |
| LweI | GCATC | 1 cut(s) | 406 |
| MaeI | CTAG | 3 cut(s) | 101, 243, 324 |
| MalI | GATC | 4 cut(s) | 57, 120, 336, 431 |
| MboI | GATC | 4 cut(s) | 55, 118, 334, 429 |
| MflI | RGATCY | 2 cut(s) | 118, 334 |
| MluCI | AATT | 4 cut(s) | 6, 250, 359, 401 |
| Mph1103I | ATGCAT | 1 cut(s) | 421 |
| MroNI | GCCGGC | 1 cut(s) | 23 |
| MseI | TTAA | 1 cut(s) | 249 |
| MspI | CCGG | 1 cut(s) | 24 |
| Mva1269I | GAATGC | 1 cut(s) | 378 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 20 |
| NaeI | GCCGGC | 1 cut(s) | 25 |
| NdeII | GATC | 4 cut(s) | 55, 118, 334, 429 |
| NgoMIV | GCCGGC | 1 cut(s) | 23 |
| NlaIII | CATG | 1 cut(s) | 287 |
| NsiI | ATGCAT | 1 cut(s) | 421 |
| NspI | RCATGY | 1 cut(s) | 287 |
| PciI | ACATGT | 1 cut(s) | 283 |
| PctI | GAATGC | 1 cut(s) | 378 |
| PdiI | GCCGGC | 1 cut(s) | 25 |
| PfeI | GAWTC | 1 cut(s) | 314 |
| PkrI | GCNGC | 1 cut(s) | 85 |
| PscI | ACATGT | 1 cut(s) | 283 |
| PsuI | RGATCY | 2 cut(s) | 118, 334 |
| RsaI | GTAC | 3 cut(s) | 189, 322, 328 |
| RsaNI | GTAC | 3 cut(s) | 188, 321, 327 |
| SaqAI | TTAA | 1 cut(s) | 249 |
| SatI | GCNGC | 1 cut(s) | 84 |
| Sau3AI | GATC | 4 cut(s) | 55, 118, 334, 429 |
| ScaI | AGTACT | 1 cut(s) | 328 |
| SetI | ASST | 4 cut(s) | 16, 132, 136, 240 |
| SfaNI | GCATC | 1 cut(s) | 406 |
| SmlI | CTYRAG | 1 cut(s) | 330 |
| SmoI | CTYRAG | 1 cut(s) | 330 |
| SpeI | ACTAGT | 1 cut(s) | 323 |
| Sse9I | AATT | 4 cut(s) | 6, 250, 359, 401 |
| SspMI | CTAG | 3 cut(s) | 101, 243, 324 |
| StyI | CCWWGG | 2 cut(s) | 46, 373 |
| TaaI | ACNGT | 1 cut(s) | 460 |
| TaqII | GACCGA | 1 cut(s) | 89 |
| TasI | AATT | 4 cut(s) | 6, 250, 359, 401 |
| TatI | WGTACW | 3 cut(s) | 187, 320, 326 |
| TfiI | GAWTC | 1 cut(s) | 314 |
| Tru1I | TTAA | 1 cut(s) | 249 |
| Tru9I | TTAA | 1 cut(s) | 249 |
| TscAI | CASTG | 2 cut(s) | 455, 465 |
| TseI | GCWGC | 1 cut(s) | 83 |
| TspDTI | ATGAA | 1 cut(s) | 498 |
| TspRI | CASTG | 2 cut(s) | 455, 465 |
| XapI | RAATTY | 1 cut(s) | 401 |
| XceI | RCATGY | 1 cut(s) | 287 |
| XspI | CTAG | 3 cut(s) | 101, 243, 324 |
| ZrmI | AGTACT | 1 cut(s) | 328 |
| Zsp2I | ATGCAT | 1 cut(s) | 421 |