ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 65 - 157 | 5.3e-11 | Reverse transcriptase-like |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 397 |
| AccB1I | GGYRCC | 1 cut(s) | 86 |
| AcsI | RAATTY | 1 cut(s) | 173 |
| AcyI | GRCGYC | 1 cut(s) | 87 |
| AfaI | GTAC | 3 cut(s) | 59, 111, 475 |
| AgeI | ACCGGT | 1 cut(s) | 313 |
| AgsI | TTSAA | 6 cut(s) | 97, 187, 211, 320, 392, 416 |
| AluBI | AGCT | 2 cut(s) | 347, 419 |
| AluI | AGCT | 2 cut(s) | 347, 419 |
| Alw26I | GTCTC | 1 cut(s) | 434 |
| ApeKI | GCWGC | 1 cut(s) | 344 |
| ApoI | RAATTY | 1 cut(s) | 173 |
| AsiGI | ACCGGT | 1 cut(s) | 313 |
| AspLEI | GCGC | 1 cut(s) | 89 |
| AsuHPI | GGTGA | 4 cut(s) | 262, 278, 303, 362 |
| BanI | GGYRCC | 1 cut(s) | 86 |
| BbvI | GCAGC | 1 cut(s) | 356 |
| BccI | CCATC | 1 cut(s) | 194 |
| BcoDI | GTCTC | 1 cut(s) | 434 |
| BfoI | RGCGCY | 1 cut(s) | 90 |
| BfuAI | ACCTGC | 1 cut(s) | 397 |
| BisI | GCNGC | 1 cut(s) | 345 |
| BlsI | GCNGC | 1 cut(s) | 346 |
| BmiI | GGNNCC | 1 cut(s) | 88 |
| BmrI | ACTGGG | 1 cut(s) | 92 |
| BmuI | ACTGGG | 1 cut(s) | 92 |
| Bsa29I | ATCGAT | 1 cut(s) | 465 |
| BsaAI | YACGTR | 1 cut(s) | 109 |
| BsaHI | GRCGYC | 1 cut(s) | 87 |
| BsaJI | CCNNGG | 1 cut(s) | 330 |
| BsaWI | WCCGGW | 1 cut(s) | 313 |
| Bse118I | RCCGGY | 1 cut(s) | 313 |
| Bse1I | ACTGG | 1 cut(s) | 87 |
| BseCI | ATCGAT | 1 cut(s) | 465 |
| BseDI | CCNNGG | 1 cut(s) | 330 |
| BseNI | ACTGG | 1 cut(s) | 87 |
| BseRI | GAGGAG | 2 cut(s) | 449, 452 |
| BseXI | GCAGC | 1 cut(s) | 356 |
| BsgI | GTGCAG | 1 cut(s) | 45 |
| BshNI | GGYRCC | 1 cut(s) | 86 |
| BshTI | ACCGGT | 1 cut(s) | 313 |
| BshVI | ATCGAT | 1 cut(s) | 465 |
| BsiSI | CCGG | 1 cut(s) | 314 |
| BsmAI | GTCTC | 1 cut(s) | 434 |
| BspDI | ATCGAT | 1 cut(s) | 465 |
| BspLI | GGNNCC | 1 cut(s) | 88 |
| BspMI | ACCTGC | 1 cut(s) | 397 |
| BspT107I | GGYRCC | 1 cut(s) | 86 |
| BsrFI | RCCGGY | 1 cut(s) | 313 |
| BsrI | ACTGG | 1 cut(s) | 87 |
| BssAI | RCCGGY | 1 cut(s) | 313 |
| BssECI | CCNNGG | 1 cut(s) | 330 |
| BssNI | GRCGYC | 1 cut(s) | 87 |
| BssT1I | CCWWGG | 1 cut(s) | 330 |
| Bst4CI | ACNGT | 1 cut(s) | 473 |
| BstACI | GRCGYC | 1 cut(s) | 87 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 350 |
| BstBAI | YACGTR | 1 cut(s) | 109 |
| BstC8I | GCNNGC | 2 cut(s) | 104, 150 |
| BstH2I | RGCGCY | 1 cut(s) | 90 |
| BstHHI | GCGC | 1 cut(s) | 89 |
| BstMAI | GTCTC | 1 cut(s) | 434 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 341, 350 |
| BstNSI | RCATGY | 1 cut(s) | 296 |
| BstV1I | GCAGC | 1 cut(s) | 356 |
| Bsu15I | ATCGAT | 1 cut(s) | 465 |
| BsuTUI | ATCGAT | 1 cut(s) | 465 |
| BveI | ACCTGC | 1 cut(s) | 397 |
| Cac8I | GCNNGC | 2 cut(s) | 104, 150 |
| CfoI | GCGC | 1 cut(s) | 89 |
| Cfr10I | RCCGGY | 1 cut(s) | 313 |
| ClaI | ATCGAT | 1 cut(s) | 465 |
| Csp6I | GTAC | 3 cut(s) | 58, 110, 474 |
| CspAI | ACCGGT | 1 cut(s) | 313 |
| CviAII | CATG | 3 cut(s) | 20, 113, 293 |
| CviJI | RGCY | 6 cut(s) | 152, 329, 335, 347, 359, 419 |
| CviKI_1 | RGCY | 6 cut(s) | 152, 329, 335, 347, 359, 419 |
| CviQI | GTAC | 3 cut(s) | 58, 110, 474 |
| DinI | GGCGCC | 1 cut(s) | 88 |
| Eco130I | CCWWGG | 1 cut(s) | 330 |
| EcoT14I | CCWWGG | 1 cut(s) | 330 |
| EcoT22I | ATGCAT | 1 cut(s) | 294 |
| EgeI | GGCGCC | 1 cut(s) | 88 |
| EheI | GGCGCC | 1 cut(s) | 88 |
| ErhI | CCWWGG | 1 cut(s) | 330 |
| FaeI | CATG | 3 cut(s) | 23, 116, 296 |
| FaiI | YATR | 6 cut(s) | 21, 114, 235, 290, 294, 422 |
| FatI | CATG | 3 cut(s) | 19, 112, 292 |
| Fnu4HI | GCNGC | 1 cut(s) | 345 |
| Fsp4HI | GCNGC | 1 cut(s) | 345 |
| GlaI | GCGC | 1 cut(s) | 88 |
| GluI | GCNGC | 1 cut(s) | 345 |
| HaeII | RGCGCY | 1 cut(s) | 90 |
| HapII | CCGG | 1 cut(s) | 314 |
| HhaI | GCGC | 1 cut(s) | 89 |
| Hin1I | GRCGYC | 1 cut(s) | 87 |
| Hin1II | CATG | 3 cut(s) | 23, 116, 296 |
| Hin6I | GCGC | 1 cut(s) | 87 |
| HinP1I | GCGC | 1 cut(s) | 87 |
| HinfI | GANTC | 1 cut(s) | 257 |
| HpaII | CCGG | 1 cut(s) | 314 |
| HphI | GGTGA | 4 cut(s) | 262, 278, 303, 362 |
| Hpy188I | TCNGA | 1 cut(s) | 161 |
| HpyAV | CCTTC | 2 cut(s) | 44, 386 |
| HpyCH4III | ACNGT | 1 cut(s) | 473 |
| HpyCH4IV | ACGT | 1 cut(s) | 108 |
| HpyCH4V | TGCA | 5 cut(s) | 26, 102, 148, 292, 364 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 341, 350 |
| HpySE526I | ACGT | 1 cut(s) | 108 |
| Hsp92I | GRCGYC | 1 cut(s) | 87 |
| Hsp92II | CATG | 3 cut(s) | 23, 116, 296 |
| HspAI | GCGC | 1 cut(s) | 87 |
| KasI | GGCGCC | 1 cut(s) | 86 |
| LpnPI | CCDG | 3 cut(s) | 68, 327, 392 |
| Lsp1109I | GCAGC | 1 cut(s) | 356 |
| MaeII | ACGT | 1 cut(s) | 108 |
| MaeIII | GTNAC | 1 cut(s) | 266 |
| MboII | GAAGA | 1 cut(s) | 300 |
| MluCI | AATT | 6 cut(s) | 50, 97, 164, 173, 365, 423 |
| Mly113I | GGCGCC | 1 cut(s) | 87 |
| MlyI | GAGTC | 1 cut(s) | 251 |
| MnlI | CCTC | 4 cut(s) | 163, 272, 427, 430 |
| Mph1103I | ATGCAT | 1 cut(s) | 294 |
| MseI | TTAA | 3 cut(s) | 167, 461, 490 |
| MslI | CAYNNNNRTG | 1 cut(s) | 111 |
| MspI | CCGG | 1 cut(s) | 314 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 341, 350 |
| NarI | GGCGCC | 1 cut(s) | 87 |
| NlaIII | CATG | 3 cut(s) | 23, 116, 296 |
| NlaIV | GGNNCC | 1 cut(s) | 88 |
| NmuCI | GTSAC | 1 cut(s) | 266 |
| NsiI | ATGCAT | 1 cut(s) | 294 |
| NspI | RCATGY | 1 cut(s) | 296 |
| PinAI | ACCGGT | 1 cut(s) | 313 |
| PkrI | GCNGC | 1 cut(s) | 346 |
| PleI | GAGTC | 1 cut(s) | 251 |
| PluTI | GGCGCC | 1 cut(s) | 90 |
| PpsI | GAGTC | 1 cut(s) | 251 |
| Ppu21I | YACGTR | 1 cut(s) | 109 |
| PspN4I | GGNNCC | 1 cut(s) | 88 |
| PsrI | GAACNNNNNNTAC | 1 cut(s) | 466 |
| RsaI | GTAC | 3 cut(s) | 59, 111, 475 |
| RsaNI | GTAC | 3 cut(s) | 58, 110, 474 |
| RseI | CAYNNNNRTG | 1 cut(s) | 111 |
| SaqAI | TTAA | 3 cut(s) | 167, 461, 490 |
| SatI | GCNGC | 1 cut(s) | 345 |
| SchI | GAGTC | 1 cut(s) | 251 |
| SetI | ASST | 5 cut(s) | 111, 349, 375, 411, 421 |
| SfoI | GGCGCC | 1 cut(s) | 88 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 111 |
| Sse9I | AATT | 6 cut(s) | 50, 97, 164, 173, 365, 423 |
| SspDI | GGCGCC | 1 cut(s) | 86 |
| StyI | CCWWGG | 1 cut(s) | 330 |
| TaaI | ACNGT | 1 cut(s) | 473 |
| TaiI | ACGT | 1 cut(s) | 111 |
| TaqI | TCGA | 1 cut(s) | 465 |
| TasI | AATT | 6 cut(s) | 50, 97, 164, 173, 365, 423 |
| Tru1I | TTAA | 3 cut(s) | 167, 461, 490 |
| Tru9I | TTAA | 3 cut(s) | 167, 461, 490 |
| TseFI | GTSAC | 1 cut(s) | 266 |
| TseI | GCWGC | 1 cut(s) | 344 |
| Tsp45I | GTSAC | 1 cut(s) | 266 |
| TspDTI | ATGAA | 2 cut(s) | 8, 26 |
| XapI | RAATTY | 1 cut(s) | 173 |
| XceI | RCATGY | 1 cut(s) | 296 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 17 |
| Zsp2I | ATGCAT | 1 cut(s) | 294 |