Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 93 - 214 | 2e-23 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 168 |
| AccI | GTMKAC | 1 cut(s) | 442 |
| AccII | CGCG | 2 cut(s) | 259, 540 |
| AciI | CCGC | 2 cut(s) | 257, 538 |
| AfaI | GTAC | 1 cut(s) | 705 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 208, 260 |
| AgsI | TTSAA | 1 cut(s) | 578 |
| AjnI | CCWGG | 1 cut(s) | 29 |
| AluBI | AGCT | 2 cut(s) | 362, 425 |
| AluI | AGCT | 2 cut(s) | 362, 425 |
| Alw26I | GTCTC | 1 cut(s) | 674 |
| ApeKI | GCWGC | 3 cut(s) | 11, 359, 497 |
| AseI | ATTAAT | 1 cut(s) | 399 |
| AspLEI | GCGC | 1 cut(s) | 290 |
| AsuHPI | GGTGA | 2 cut(s) | 74, 225 |
| BaeGI | GKGCMC | 1 cut(s) | 141 |
| BanI | GGYRCC | 1 cut(s) | 168 |
| BbsI | GAAGAC | 2 cut(s) | 271, 422 |
| BbvCI | CCTCAGC | 1 cut(s) | 411 |
| BbvI | GCAGC | 3 cut(s) | 23, 371, 484 |
| BccI | CCATC | 2 cut(s) | 210, 278 |
| BciT130I | CCWGG | 1 cut(s) | 31 |
| BcoDI | GTCTC | 1 cut(s) | 674 |
| BfaI | CTAG | 2 cut(s) | 216, 645 |
| BfoI | RGCGCY | 1 cut(s) | 291 |
| BisI | GCNGC | 4 cut(s) | 12, 360, 498, 538 |
| BlsI | GCNGC | 4 cut(s) | 13, 361, 499, 539 |
| Bme1390I | CCNGG | 1 cut(s) | 31 |
| BmiI | GGNNCC | 1 cut(s) | 170 |
| BmrFI | CCNGG | 1 cut(s) | 31 |
| BmsI | GCATC | 1 cut(s) | 163 |
| BpiI | GAAGAC | 2 cut(s) | 271, 422 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 464, 496 |
| Bpu10I | CCTNAGC | 1 cut(s) | 411 |
| BsaJI | CCNNGG | 2 cut(s) | 30, 448 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 208, 260 |
| Bse118I | RCCGGY | 1 cut(s) | 171 |
| BseBI | CCWGG | 1 cut(s) | 31 |
| BseDI | CCNNGG | 2 cut(s) | 30, 448 |
| BseGI | GGATG | 2 cut(s) | 202, 706 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 208, 260 |
| BseMII | CTCAG | 2 cut(s) | 47, 402 |
| BseRI | GAGGAG | 1 cut(s) | 692 |
| BseSI | GKGCMC | 1 cut(s) | 141 |
| BseXI | GCAGC | 3 cut(s) | 23, 371, 484 |
| BsgI | GTGCAG | 1 cut(s) | 483 |
| Bsh1236I | CGCG | 2 cut(s) | 259, 540 |
| BshNI | GGYRCC | 1 cut(s) | 168 |
| BsiSI | CCGG | 1 cut(s) | 172 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 208, 260 |
| BsmAI | GTCTC | 1 cut(s) | 674 |
| BsmI | GAATGC | 1 cut(s) | 254 |
| Bsp1286I | GDGCHC | 1 cut(s) | 141 |
| Bsp143I | GATC | 1 cut(s) | 474 |
| BspACI | CCGC | 2 cut(s) | 257, 538 |
| BspCNI | CTCAG | 2 cut(s) | 48, 403 |
| BspFNI | CGCG | 2 cut(s) | 259, 540 |
| BspLI | GGNNCC | 1 cut(s) | 170 |
| BspT107I | GGYRCC | 1 cut(s) | 168 |
| BsrFI | RCCGGY | 1 cut(s) | 171 |
| BssAI | RCCGGY | 1 cut(s) | 171 |
| BssECI | CCNNGG | 2 cut(s) | 30, 448 |
| BssMI | GATC | 1 cut(s) | 474 |
| BssNAI | GTATAC | 1 cut(s) | 443 |
| BssT1I | CCWWGG | 1 cut(s) | 448 |
| Bst1107I | GTATAC | 1 cut(s) | 443 |
| Bst2UI | CCWGG | 1 cut(s) | 31 |
| Bst4CI | ACNGT | 2 cut(s) | 93, 605 |
| Bst6I | CTCTTC | 1 cut(s) | 221 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 365, 641 |
| BstC8I | GCNNGC | 2 cut(s) | 173, 633 |
| BstDEI | CTNAG | 2 cut(s) | 56, 411 |
| BstEII | GGTNACC | 1 cut(s) | 231 |
| BstF5I | GGATG | 2 cut(s) | 202, 706 |
| BstFNI | CGCG | 2 cut(s) | 259, 540 |
| BstH2I | RGCGCY | 1 cut(s) | 291 |
| BstHHI | GCGC | 1 cut(s) | 290 |
| BstKTI | GATC | 1 cut(s) | 477 |
| BstMAI | GTCTC | 1 cut(s) | 674 |
| BstMBI | GATC | 1 cut(s) | 474 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 145, 296, 365, 392, 422, 641 |
| BstNI | CCWGG | 1 cut(s) | 31 |
| BstNSI | RCATGY | 2 cut(s) | 386, 420 |
| BstPI | GGTNACC | 1 cut(s) | 231 |
| BstSCI | CCNGG | 1 cut(s) | 29 |
| BstSLI | GKGCMC | 1 cut(s) | 141 |
| BstUI | CGCG | 2 cut(s) | 259, 540 |
| BstV1I | GCAGC | 3 cut(s) | 23, 371, 484 |
| BstV2I | GAAGAC | 2 cut(s) | 271, 422 |
| BstZ17I | GTATAC | 1 cut(s) | 443 |
| BtsCI | GGATG | 2 cut(s) | 202, 706 |
| BtsIMutI | CAGTG | 2 cut(s) | 89, 200 |
| Cac8I | GCNNGC | 2 cut(s) | 173, 633 |
| CfoI | GCGC | 1 cut(s) | 290 |
| Cfr10I | RCCGGY | 1 cut(s) | 171 |
| Csp6I | GTAC | 1 cut(s) | 704 |
| CviAII | CATG | 8 cut(s) | 8, 17, 85, 349, 383, 417, 469, 686 |
| CviJI | RGCY | 8 cut(s) | 148, 299, 362, 395, 410, 425, 537, 631 |
| CviKI_1 | RGCY | 8 cut(s) | 148, 299, 362, 395, 410, 425, 537, 631 |
| CviQI | GTAC | 1 cut(s) | 704 |
| DdeI | CTNAG | 2 cut(s) | 56, 411 |
| DpnI | GATC | 1 cut(s) | 476 |
| DpnII | GATC | 1 cut(s) | 474 |
| DraI | TTTAAA | 1 cut(s) | 586 |
| Eam1104I | CTCTTC | 1 cut(s) | 221 |
| EarI | CTCTTC | 1 cut(s) | 221 |
| Eco130I | CCWWGG | 1 cut(s) | 448 |
| Eco91I | GGTNACC | 1 cut(s) | 231 |
| EcoO65I | GGTNACC | 1 cut(s) | 231 |
| EcoRII | CCWGG | 1 cut(s) | 29 |
| EcoT14I | CCWWGG | 1 cut(s) | 448 |
| EcoT22I | ATGCAT | 1 cut(s) | 156 |
| ErhI | CCWWGG | 1 cut(s) | 448 |
| FaeI | CATG | 8 cut(s) | 11, 20, 88, 352, 386, 420, 472, 689 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 549, 581 |
| FatI | CATG | 8 cut(s) | 7, 16, 84, 348, 382, 416, 468, 685 |
| FblI | GTMKAC | 1 cut(s) | 442 |
| Fnu4HI | GCNGC | 4 cut(s) | 12, 360, 498, 538 |
| FokI | GGATG | 2 cut(s) | 189, 713 |
| Fsp4HI | GCNGC | 4 cut(s) | 12, 360, 498, 538 |
| FspBI | CTAG | 2 cut(s) | 216, 645 |
| GlaI | GCGC | 1 cut(s) | 289 |
| GluI | GCNGC | 4 cut(s) | 12, 360, 498, 538 |
| HaeII | RGCGCY | 1 cut(s) | 291 |
| HapII | CCGG | 1 cut(s) | 172 |
| HhaI | GCGC | 1 cut(s) | 290 |
| Hin1II | CATG | 8 cut(s) | 11, 20, 88, 352, 386, 420, 472, 689 |
| Hin6I | GCGC | 1 cut(s) | 288 |
| HinP1I | GCGC | 1 cut(s) | 288 |
| HincII | GTYRAC | 1 cut(s) | 73 |
| HindII | GTYRAC | 1 cut(s) | 73 |
| HinfI | GANTC | 2 cut(s) | 479, 682 |
| HpaII | CCGG | 1 cut(s) | 172 |
| HphI | GGTGA | 2 cut(s) | 74, 225 |
| Hpy166II | GTNNAC | 2 cut(s) | 73, 443 |
| Hpy188I | TCNGA | 4 cut(s) | 159, 335, 492, 529 |
| Hpy188III | TCNNGA | 1 cut(s) | 698 |
| Hpy8I | GTNNAC | 2 cut(s) | 73, 443 |
| HpyAV | CCTTC | 1 cut(s) | 497 |
| HpyCH4III | ACNGT | 2 cut(s) | 93, 605 |
| HpyCH4IV | ACGT | 1 cut(s) | 112 |
| HpyCH4V | TGCA | 9 cut(s) | 11, 84, 154, 359, 368, 386, 500, 623, 635 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 145, 296, 365, 392, 422, 641 |
| HpyF3I | CTNAG | 2 cut(s) | 56, 411 |
| HpySE526I | ACGT | 1 cut(s) | 112 |
| Hsp92II | CATG | 8 cut(s) | 11, 20, 88, 352, 386, 420, 472, 689 |
| HspAI | GCGC | 1 cut(s) | 288 |
| KroI | GCCGGC | 1 cut(s) | 171 |
| KroNI | GCCGGC | 1 cut(s) | 173 |
| Kzo9I | GATC | 1 cut(s) | 474 |
| LpnPI | CCDG | 5 cut(s) | 16, 43, 185, 411, 683 |
| Lsp1109I | GCAGC | 3 cut(s) | 23, 371, 484 |
| LweI | GCATC | 1 cut(s) | 163 |
| MaeI | CTAG | 2 cut(s) | 216, 645 |
| MaeII | ACGT | 1 cut(s) | 112 |
| MaeIII | GTNAC | 2 cut(s) | 197, 231 |
| MalI | GATC | 1 cut(s) | 476 |
| MboI | GATC | 1 cut(s) | 474 |
| MboII | GAAGA | 4 cut(s) | 238, 276, 422, 425 |
| MhlI | GDGCHC | 1 cut(s) | 141 |
| MluCI | AATT | 4 cut(s) | 123, 273, 462, 520 |
| MlyI | GAGTC | 2 cut(s) | 473, 676 |
| MmeI | TCCRAC | 3 cut(s) | 162, 292, 434 |
| Mph1103I | ATGCAT | 1 cut(s) | 156 |
| MroNI | GCCGGC | 1 cut(s) | 171 |
| MseI | TTAA | 4 cut(s) | 276, 399, 585, 748 |
| MspI | CCGG | 1 cut(s) | 172 |
| MspR9I | CCNGG | 1 cut(s) | 31 |
| Mva1269I | GAATGC | 1 cut(s) | 254 |
| MvaI | CCWGG | 1 cut(s) | 31 |
| MvnI | CGCG | 2 cut(s) | 259, 540 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 145, 296, 365, 392, 422, 641 |
| NaeI | GCCGGC | 1 cut(s) | 173 |
| NdeII | GATC | 1 cut(s) | 474 |
| NgoMIV | GCCGGC | 1 cut(s) | 171 |
| NlaIII | CATG | 8 cut(s) | 11, 20, 88, 352, 386, 420, 472, 689 |
| NlaIV | GGNNCC | 1 cut(s) | 170 |
| NmeAIII | GCCGAG | 1 cut(s) | 371 |
| NmuCI | GTSAC | 1 cut(s) | 231 |
| NsiI | ATGCAT | 1 cut(s) | 156 |
| NspI | RCATGY | 2 cut(s) | 386, 420 |
| PctI | GAATGC | 1 cut(s) | 254 |
| PdiI | GCCGGC | 1 cut(s) | 173 |
| PkrI | GCNGC | 4 cut(s) | 13, 361, 499, 539 |
| PleI | GAGTC | 2 cut(s) | 473, 676 |
| PpsI | GAGTC | 2 cut(s) | 473, 676 |
| PshBI | ATTAAT | 1 cut(s) | 399 |
| Psp6I | CCWGG | 1 cut(s) | 29 |
| PspEI | GGTNACC | 1 cut(s) | 231 |
| PspGI | CCWGG | 1 cut(s) | 29 |
| PspN4I | GGNNCC | 1 cut(s) | 170 |
| RsaI | GTAC | 1 cut(s) | 705 |
| RsaNI | GTAC | 1 cut(s) | 704 |
| SaqAI | TTAA | 4 cut(s) | 276, 399, 585, 748 |
| SatI | GCNGC | 4 cut(s) | 12, 360, 498, 538 |
| Sau3AI | GATC | 1 cut(s) | 474 |
| SchI | GAGTC | 2 cut(s) | 473, 676 |
| ScrFI | CCNGG | 1 cut(s) | 31 |
| SduI | GDGCHC | 1 cut(s) | 141 |
| SfaNI | GCATC | 1 cut(s) | 163 |
| Sse9I | AATT | 4 cut(s) | 123, 273, 462, 520 |
| SsiI | CCGC | 2 cut(s) | 257, 538 |
| SspMI | CTAG | 2 cut(s) | 216, 645 |
| StyD4I | CCNGG | 1 cut(s) | 29 |
| StyI | CCWWGG | 1 cut(s) | 448 |
| TaaI | ACNGT | 2 cut(s) | 93, 605 |
| TaiI | ACGT | 1 cut(s) | 115 |
| TaqI | TCGA | 1 cut(s) | 477 |
| TasI | AATT | 4 cut(s) | 123, 273, 462, 520 |
| TatI | WGTACW | 1 cut(s) | 703 |
| TauI | GCSGC | 1 cut(s) | 540 |
| Tru1I | TTAA | 4 cut(s) | 276, 399, 585, 748 |
| Tru9I | TTAA | 4 cut(s) | 276, 399, 585, 748 |
| TscAI | CASTG | 2 cut(s) | 96, 200 |
| TseFI | GTSAC | 1 cut(s) | 231 |
| TseI | GCWGC | 3 cut(s) | 11, 359, 497 |
| Tsp45I | GTSAC | 1 cut(s) | 231 |
| TspDTI | ATGAA | 1 cut(s) | 123 |
| TspGWI | ACGGA | 1 cut(s) | 473 |
| TspRI | CASTG | 2 cut(s) | 96, 200 |
| VspI | ATTAAT | 1 cut(s) | 399 |
| XceI | RCATGY | 2 cut(s) | 386, 420 |
| XmiI | GTMKAC | 1 cut(s) | 442 |
| XspI | CTAG | 2 cut(s) | 216, 645 |
| Zsp2I | ATGCAT | 1 cut(s) | 156 |