ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 104 |
| AciI | CCGC | 2 cut(s) | 133, 590 |
| AclWI | GGATC | 1 cut(s) | 499 |
| AcoI | YGGCCR | 1 cut(s) | 80 |
| AcsI | RAATTY | 1 cut(s) | 561 |
| AcyI | GRCGYC | 2 cut(s) | 33, 101 |
| AfaI | GTAC | 4 cut(s) | 121, 287, 463, 579 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 94 |
| AflIII | ACRYGT | 1 cut(s) | 64 |
| AjnI | CCWGG | 1 cut(s) | 293 |
| AluBI | AGCT | 4 cut(s) | 6, 242, 398, 596 |
| AluI | AGCT | 4 cut(s) | 6, 242, 398, 596 |
| Alw21I | GWGCWC | 1 cut(s) | 558 |
| Alw26I | GTCTC | 2 cut(s) | 92, 273 |
| AlwI | GGATC | 1 cut(s) | 499 |
| AoxI | GGCC | 2 cut(s) | 80, 476 |
| ApeKI | GCWGC | 1 cut(s) | 6 |
| ApoI | RAATTY | 1 cut(s) | 561 |
| AsuC2I | CCSGG | 1 cut(s) | 263 |
| BalI | TGGCCA | 1 cut(s) | 82 |
| Bbv12I | GWGCWC | 1 cut(s) | 558 |
| BciT130I | CCWGG | 1 cut(s) | 295 |
| BclI | TGATCA | 1 cut(s) | 528 |
| BcnI | CCSGG | 1 cut(s) | 263 |
| BcoDI | GTCTC | 2 cut(s) | 92, 273 |
| BfaI | CTAG | 3 cut(s) | 375, 459, 621 |
| BisI | GCNGC | 1 cut(s) | 7 |
| BlpI | GCTNAGC | 1 cut(s) | 234 |
| BlsI | GCNGC | 1 cut(s) | 8 |
| BmcAI | AGTACT | 1 cut(s) | 463 |
| Bme1390I | CCNGG | 2 cut(s) | 263, 295 |
| BmrFI | CCNGG | 2 cut(s) | 263, 295 |
| BmsI | GCATC | 1 cut(s) | 577 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 234 |
| BpuMI | CCSGG | 1 cut(s) | 263 |
| BsaHI | GRCGYC | 2 cut(s) | 33, 101 |
| BsaJI | CCNNGG | 1 cut(s) | 174 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 18, 34, 48, 64 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 94 |
| Bse1I | ACTGG | 1 cut(s) | 407 |
| BseBI | CCWGG | 1 cut(s) | 295 |
| BseDI | CCNNGG | 1 cut(s) | 174 |
| BseGI | GGATG | 4 cut(s) | 163, 508, 531, 556 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 94 |
| BseMII | CTCAG | 1 cut(s) | 201 |
| BseNI | ACTGG | 1 cut(s) | 407 |
| BseRI | GAGGAG | 1 cut(s) | 373 |
| BshFI | GGCC | 2 cut(s) | 82, 478 |
| BsiHKAI | GWGCWC | 1 cut(s) | 558 |
| BsiSI | CCGG | 1 cut(s) | 263 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 94 |
| BsmAI | GTCTC | 2 cut(s) | 92, 273 |
| BsmBI | CGTCTC | 1 cut(s) | 92 |
| BsmI | GAATGC | 1 cut(s) | 328 |
| BsnI | GGCC | 2 cut(s) | 82, 478 |
| Bsp1286I | GDGCHC | 1 cut(s) | 558 |
| Bsp1407I | TGTACA | 2 cut(s) | 285, 577 |
| Bsp143I | GATC | 2 cut(s) | 491, 528 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 234 |
| BspACI | CCGC | 2 cut(s) | 133, 590 |
| BspANI | GGCC | 2 cut(s) | 82, 478 |
| BspCNI | CTCAG | 1 cut(s) | 202 |
| BspPI | GGATC | 1 cut(s) | 499 |
| BsrGI | TGTACA | 2 cut(s) | 285, 577 |
| BsrI | ACTGG | 1 cut(s) | 407 |
| BssECI | CCNNGG | 1 cut(s) | 174 |
| BssMI | GATC | 2 cut(s) | 491, 528 |
| BssNI | GRCGYC | 2 cut(s) | 33, 101 |
| BssT1I | CCWWGG | 1 cut(s) | 174 |
| Bst2UI | CCWGG | 1 cut(s) | 295 |
| Bst4CI | ACNGT | 3 cut(s) | 89, 285, 466 |
| BstACI | GRCGYC | 2 cut(s) | 33, 101 |
| BstAUI | TGTACA | 2 cut(s) | 285, 577 |
| BstC8I | GCNNGC | 1 cut(s) | 240 |
| BstDEI | CTNAG | 2 cut(s) | 210, 234 |
| BstF5I | GGATG | 4 cut(s) | 163, 508, 531, 556 |
| BstKTI | GATC | 2 cut(s) | 494, 531 |
| BstMAI | GTCTC | 2 cut(s) | 92, 273 |
| BstMBI | GATC | 2 cut(s) | 491, 528 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 79, 239, 602 |
| BstNI | CCWGG | 1 cut(s) | 295 |
| BstNSI | RCATGY | 3 cut(s) | 68, 338, 584 |
| BstSCI | CCNGG | 2 cut(s) | 261, 293 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 181 |
| BsuRI | GGCC | 2 cut(s) | 82, 478 |
| BtsCI | GGATG | 4 cut(s) | 163, 508, 531, 556 |
| Cac8I | GCNNGC | 1 cut(s) | 240 |
| CseI | GACGC | 1 cut(s) | 22 |
| Csp6I | GTAC | 4 cut(s) | 120, 286, 462, 578 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 468, 503 |
| CviAII | CATG | 6 cut(s) | 65, 78, 106, 170, 335, 581 |
| CviJI | RGCY | 9 cut(s) | 6, 82, 233, 242, 293, 398, 478, 512, 596 |
| CviKI_1 | RGCY | 9 cut(s) | 6, 82, 233, 242, 293, 398, 478, 512, 596 |
| CviQI | GTAC | 4 cut(s) | 120, 286, 462, 578 |
| DdeI | CTNAG | 2 cut(s) | 210, 234 |
| DpnI | GATC | 2 cut(s) | 493, 530 |
| DpnII | GATC | 2 cut(s) | 491, 528 |
| EaeI | YGGCCR | 1 cut(s) | 80 |
| Eco130I | CCWWGG | 1 cut(s) | 174 |
| EcoRII | CCWGG | 1 cut(s) | 293 |
| EcoT14I | CCWWGG | 1 cut(s) | 174 |
| ErhI | CCWWGG | 1 cut(s) | 174 |
| Esp3I | CGTCTC | 1 cut(s) | 92 |
| FaeI | CATG | 6 cut(s) | 68, 81, 109, 173, 338, 584 |
| FatI | CATG | 6 cut(s) | 64, 77, 105, 169, 334, 580 |
| FauNDI | CATATG | 1 cut(s) | 434 |
| FbaI | TGATCA | 1 cut(s) | 528 |
| Fnu4HI | GCNGC | 1 cut(s) | 7 |
| FokI | GGATG | 4 cut(s) | 170, 515, 518, 563 |
| Fsp4HI | GCNGC | 1 cut(s) | 7 |
| FspBI | CTAG | 3 cut(s) | 375, 459, 621 |
| GluI | GCNGC | 1 cut(s) | 7 |
| HaeIII | GGCC | 2 cut(s) | 82, 478 |
| HapII | CCGG | 1 cut(s) | 263 |
| HgaI | GACGC | 1 cut(s) | 22 |
| Hin1I | GRCGYC | 2 cut(s) | 33, 101 |
| Hin1II | CATG | 6 cut(s) | 68, 81, 109, 173, 338, 584 |
| HindIII | AAGCTT | 1 cut(s) | 240 |
| HinfI | GANTC | 3 cut(s) | 43, 266, 454 |
| HpaII | CCGG | 1 cut(s) | 263 |
| Hpy188I | TCNGA | 2 cut(s) | 211, 442 |
| Hpy99I | CGWCG | 2 cut(s) | 38, 226 |
| HpyAV | CCTTC | 3 cut(s) | 23, 354, 386 |
| HpyCH4III | ACNGT | 3 cut(s) | 89, 285, 466 |
| HpyCH4IV | ACGT | 1 cut(s) | 101 |
| HpyCH4V | TGCA | 5 cut(s) | 113, 326, 338, 388, 584 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 79, 239, 602 |
| HpyF3I | CTNAG | 2 cut(s) | 210, 234 |
| HpySE526I | ACGT | 1 cut(s) | 101 |
| Hsp92I | GRCGYC | 2 cut(s) | 33, 101 |
| Hsp92II | CATG | 6 cut(s) | 68, 81, 109, 173, 338, 584 |
| Ksp22I | TGATCA | 1 cut(s) | 528 |
| Kzo9I | GATC | 2 cut(s) | 491, 528 |
| LmnI | GCTCC | 1 cut(s) | 395 |
| LpnPI | CCDG | 8 cut(s) | 176, 276, 280, 307, 374, 388, 460, 485 |
| LweI | GCATC | 1 cut(s) | 577 |
| MaeI | CTAG | 3 cut(s) | 375, 459, 621 |
| MaeII | ACGT | 1 cut(s) | 101 |
| MaeIII | GTNAC | 1 cut(s) | 60 |
| MalI | GATC | 2 cut(s) | 493, 530 |
| MboI | GATC | 2 cut(s) | 491, 528 |
| MboII | GAAGA | 1 cut(s) | 341 |
| MfeI | CAATTG | 1 cut(s) | 482 |
| MhlI | GDGCHC | 1 cut(s) | 558 |
| MlsI | TGGCCA | 1 cut(s) | 82 |
| MluCI | AATT | 4 cut(s) | 217, 482, 561, 606 |
| MluNI | TGGCCA | 1 cut(s) | 82 |
| MlyI | GAGTC | 2 cut(s) | 52, 275 |
| MnlI | CCTC | 7 cut(s) | 9, 118, 172, 179, 240, 351, 546 |
| Mox20I | TGGCCA | 1 cut(s) | 82 |
| MscI | TGGCCA | 1 cut(s) | 82 |
| MseI | TTAA | 2 cut(s) | 11, 216 |
| MslI | CAYNNNNRTG | 1 cut(s) | 585 |
| Msp20I | TGGCCA | 1 cut(s) | 82 |
| MspI | CCGG | 1 cut(s) | 263 |
| MspR9I | CCNGG | 2 cut(s) | 263, 295 |
| MunI | CAATTG | 1 cut(s) | 482 |
| Mva1269I | GAATGC | 1 cut(s) | 328 |
| MvaI | CCWGG | 1 cut(s) | 295 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 79, 239, 602 |
| NciI | CCSGG | 1 cut(s) | 263 |
| NdeI | CATATG | 1 cut(s) | 434 |
| NdeII | GATC | 2 cut(s) | 491, 528 |
| NlaIII | CATG | 6 cut(s) | 68, 81, 109, 173, 338, 584 |
| NspI | RCATGY | 3 cut(s) | 68, 338, 584 |
| PciI | ACATGT | 1 cut(s) | 64 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 30 |
| PctI | GAATGC | 1 cut(s) | 328 |
| PfeI | GAWTC | 1 cut(s) | 454 |
| PkrI | GCNGC | 1 cut(s) | 8 |
| PleI | GAGTC | 2 cut(s) | 51, 274 |
| PpsI | GAGTC | 2 cut(s) | 51, 274 |
| PscI | ACATGT | 1 cut(s) | 64 |
| Psp6I | CCWGG | 1 cut(s) | 293 |
| PspGI | CCWGG | 1 cut(s) | 293 |
| RsaI | GTAC | 4 cut(s) | 121, 287, 463, 579 |
| RsaNI | GTAC | 4 cut(s) | 120, 286, 462, 578 |
| RseI | CAYNNNNRTG | 1 cut(s) | 585 |
| SaqAI | TTAA | 2 cut(s) | 11, 216 |
| SatI | GCNGC | 1 cut(s) | 7 |
| Sau3AI | GATC | 2 cut(s) | 491, 528 |
| ScaI | AGTACT | 1 cut(s) | 463 |
| SchI | GAGTC | 2 cut(s) | 52, 275 |
| ScrFI | CCNGG | 2 cut(s) | 263, 295 |
| SduI | GDGCHC | 1 cut(s) | 558 |
| SetI | ASST | 8 cut(s) | 8, 104, 183, 190, 244, 299, 400, 598 |
| SfaNI | GCATC | 1 cut(s) | 577 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 585 |
| SmlI | CTYRAG | 1 cut(s) | 613 |
| SmoI | CTYRAG | 1 cut(s) | 613 |
| Sse9I | AATT | 4 cut(s) | 217, 482, 561, 606 |
| SsiI | CCGC | 2 cut(s) | 133, 590 |
| SspMI | CTAG | 3 cut(s) | 375, 459, 621 |
| StyD4I | CCNGG | 2 cut(s) | 261, 293 |
| StyI | CCWWGG | 1 cut(s) | 174 |
| TaaI | ACNGT | 3 cut(s) | 89, 285, 466 |
| TaiI | ACGT | 1 cut(s) | 104 |
| TaqI | TCGA | 1 cut(s) | 224 |
| TasI | AATT | 4 cut(s) | 217, 482, 561, 606 |
| TatI | WGTACW | 4 cut(s) | 119, 285, 461, 577 |
| TfiI | GAWTC | 1 cut(s) | 454 |
| Tru1I | TTAA | 2 cut(s) | 11, 216 |
| Tru9I | TTAA | 2 cut(s) | 11, 216 |
| TseI | GCWGC | 1 cut(s) | 6 |
| TspDTI | ATGAA | 2 cut(s) | 303, 554 |
| TspGWI | ACGGA | 1 cut(s) | 39 |
| XapI | RAATTY | 1 cut(s) | 561 |
| XceI | RCATGY | 3 cut(s) | 68, 338, 584 |
| XspI | CTAG | 3 cut(s) | 375, 459, 621 |
| ZraI | GACGTC | 1 cut(s) | 102 |
| ZrmI | AGTACT | 1 cut(s) | 463 |