Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 399 |
| Acc16I | TGCGCA | 1 cut(s) | 1358 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 688, 720 |
| AciI | CCGC | 2 cut(s) | 1274, 1280 |
| AclWI | GGATC | 3 cut(s) | 766, 917, 930 |
| AcoI | YGGCCR | 1 cut(s) | 690 |
| AcsI | RAATTY | 4 cut(s) | 162, 321, 432, 1211 |
| AfaI | GTAC | 3 cut(s) | 564, 601, 1159 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 33, 154, 294, 516, 534, 688, 720, 1021, 1283 |
| AgsI | TTSAA | 5 cut(s) | 41, 382, 1012, 1048, 1217 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 884 |
| AjnI | CCWGG | 1 cut(s) | 713 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1249, 1281 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 171, 203 |
| AluBI | AGCT | 6 cut(s) | 7, 171, 804, 1194, 1229, 1235 |
| AluI | AGCT | 6 cut(s) | 7, 171, 804, 1194, 1229, 1235 |
| Alw21I | GWGCWC | 1 cut(s) | 9 |
| Alw26I | GTCTC | 1 cut(s) | 749 |
| AlwI | GGATC | 3 cut(s) | 766, 917, 930 |
| AoxI | GGCC | 4 cut(s) | 198, 690, 1068, 1393 |
| ApaI | GGGCCC | 1 cut(s) | 1072 |
| ApeKI | GCWGC | 2 cut(s) | 171, 1382 |
| ApoI | RAATTY | 4 cut(s) | 162, 321, 432, 1211 |
| AseI | ATTAAT | 1 cut(s) | 143 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 436 |
| AspLEI | GCGC | 4 cut(s) | 176, 945, 1225, 1359 |
| AspS9I | GGNCC | 3 cut(s) | 1068, 1069, 1394 |
| AsuC2I | CCSGG | 1 cut(s) | 446 |
| AsuHPI | GGTGA | 1 cut(s) | 657 |
| BaeGI | GKGCMC | 1 cut(s) | 1072 |
| BamHI | GGATCC | 1 cut(s) | 922 |
| BanII | GRGCYC | 2 cut(s) | 9, 1072 |
| BauI | CACGAG | 2 cut(s) | 362, 573 |
| BbsI | GAAGAC | 1 cut(s) | 1264 |
| Bbv12I | GWGCWC | 1 cut(s) | 9 |
| BbvI | GCAGC | 2 cut(s) | 158, 1394 |
| BccI | CCATC | 2 cut(s) | 35, 420 |
| BceAI | ACGGC | 1 cut(s) | 185 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 769, 803 |
| BciT130I | CCWGG | 1 cut(s) | 715 |
| BcnI | CCSGG | 1 cut(s) | 446 |
| BcoDI | GTCTC | 1 cut(s) | 749 |
| BfaI | CTAG | 4 cut(s) | 20, 801, 902, 1083 |
| BisI | GCNGC | 2 cut(s) | 172, 1383 |
| BlsI | GCNGC | 2 cut(s) | 173, 1384 |
| BmcAI | AGTACT | 2 cut(s) | 564, 601 |
| Bme1390I | CCNGG | 2 cut(s) | 446, 715 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 884 |
| BmgT120I | GGNCC | 3 cut(s) | 1068, 1069, 1394 |
| BmiI | GGNNCC | 3 cut(s) | 924, 1070, 1396 |
| BmrFI | CCNGG | 2 cut(s) | 446, 715 |
| BmrI | ACTGGG | 1 cut(s) | 1377 |
| BmsI | GCATC | 5 cut(s) | 511, 694, 716, 1047, 1297 |
| BmuI | ACTGGG | 1 cut(s) | 1377 |
| BpiI | GAAGAC | 1 cut(s) | 1264 |
| BpmI | CTGGAG | 3 cut(s) | 902, 1001, 1215 |
| BpuEI | CTTGAG | 1 cut(s) | 1158 |
| BpuMI | CCSGG | 1 cut(s) | 446 |
| BsaJI | CCNNGG | 4 cut(s) | 31, 201, 510, 967 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 33, 154, 294, 516, 534, 688, 720, 1021, 1283 |
| Bse118I | RCCGGY | 1 cut(s) | 1276 |
| Bse1I | ACTGG | 3 cut(s) | 885, 1018, 1372 |
| Bse3DI | GCAATG | 3 cut(s) | 456, 490, 725 |
| BseBI | CCWGG | 1 cut(s) | 715 |
| BseDI | CCNNGG | 4 cut(s) | 31, 201, 510, 967 |
| BseGI | GGATG | 7 cut(s) | 27, 267, 431, 526, 707, 1062, 1312 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 33, 154, 294, 516, 534, 688, 720, 1021, 1283 |
| BseMI | GCAATG | 3 cut(s) | 456, 490, 725 |
| BseMII | CTCAG | 2 cut(s) | 617, 819 |
| BseNI | ACTGG | 3 cut(s) | 885, 1018, 1372 |
| BseRI | GAGGAG | 2 cut(s) | 520, 1350 |
| BseSI | GKGCMC | 1 cut(s) | 1072 |
| BseXI | GCAGC | 2 cut(s) | 158, 1394 |
| Bsh1285I | CGRYCG | 1 cut(s) | 793 |
| BshFI | GGCC | 4 cut(s) | 200, 692, 1070, 1395 |
| BsiEI | CGRYCG | 1 cut(s) | 793 |
| BsiHKAI | GWGCWC | 1 cut(s) | 9 |
| BsiSI | CCGG | 2 cut(s) | 446, 1277 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 33, 154, 294, 516, 534, 688, 720, 1021, 1283 |
| BsmAI | GTCTC | 1 cut(s) | 749 |
| BsmI | GAATGC | 1 cut(s) | 780 |
| BsnI | GGCC | 4 cut(s) | 200, 692, 1070, 1395 |
| Bsp120I | GGGCCC | 1 cut(s) | 1068 |
| Bsp1286I | GDGCHC | 2 cut(s) | 9, 1072 |
| Bsp143I | GATC | 6 cut(s) | 16, 662, 694, 771, 922, 1110 |
| BspACI | CCGC | 2 cut(s) | 1274, 1280 |
| BspANI | GGCC | 4 cut(s) | 200, 692, 1070, 1395 |
| BspCNI | CTCAG | 2 cut(s) | 616, 818 |
| BspLI | GGNNCC | 3 cut(s) | 924, 1070, 1396 |
| BspPI | GGATC | 3 cut(s) | 766, 917, 930 |
| BsrDI | GCAATG | 3 cut(s) | 456, 490, 725 |
| BsrFI | RCCGGY | 1 cut(s) | 1276 |
| BsrI | ACTGG | 3 cut(s) | 885, 1018, 1372 |
| BssAI | RCCGGY | 1 cut(s) | 1276 |
| BssECI | CCNNGG | 4 cut(s) | 31, 201, 510, 967 |
| BssMI | GATC | 6 cut(s) | 16, 662, 694, 771, 922, 1110 |
| BssSI | CACGAG | 2 cut(s) | 362, 573 |
| BssT1I | CCWWGG | 1 cut(s) | 31 |
| Bst2BI | CACGAG | 2 cut(s) | 362, 573 |
| Bst2UI | CCWGG | 1 cut(s) | 715 |
| Bst4CI | ACNGT | 3 cut(s) | 236, 279, 1263 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1388 |
| BstC8I | GCNNGC | 5 cut(s) | 74, 414, 1227, 1278, 1393 |
| BstDEI | CTNAG | 4 cut(s) | 167, 249, 603, 805 |
| BstDSI | CCRYGG | 1 cut(s) | 201 |
| BstF5I | GGATG | 7 cut(s) | 27, 267, 431, 526, 707, 1062, 1312 |
| BstHHI | GCGC | 4 cut(s) | 176, 945, 1225, 1359 |
| BstKTI | GATC | 6 cut(s) | 19, 665, 697, 774, 925, 1113 |
| BstMAI | GTCTC | 1 cut(s) | 749 |
| BstMBI | GATC | 6 cut(s) | 16, 662, 694, 771, 922, 1110 |
| BstMCI | CGRYCG | 1 cut(s) | 793 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 110, 413, 1388 |
| BstNI | CCWGG | 1 cut(s) | 715 |
| BstSCI | CCNGG | 2 cut(s) | 444, 713 |
| BstSLI | GKGCMC | 1 cut(s) | 1072 |
| BstV1I | GCAGC | 2 cut(s) | 158, 1394 |
| BstV2I | GAAGAC | 1 cut(s) | 1264 |
| BstX2I | RGATCY | 2 cut(s) | 771, 922 |
| BstYI | RGATCY | 2 cut(s) | 771, 922 |
| BsuRI | GGCC | 4 cut(s) | 200, 692, 1070, 1395 |
| BtgI | CCRYGG | 1 cut(s) | 201 |
| BtsCI | GGATG | 7 cut(s) | 27, 267, 431, 526, 707, 1062, 1312 |
| BtsI | GCAGTG | 1 cut(s) | 77 |
| BtsIMutI | CAGTG | 2 cut(s) | 77, 1365 |
| Cac8I | GCNNGC | 5 cut(s) | 74, 414, 1227, 1278, 1393 |
| CfoI | GCGC | 4 cut(s) | 176, 945, 1225, 1359 |
| Cfr10I | RCCGGY | 1 cut(s) | 1276 |
| Cfr13I | GGNCC | 3 cut(s) | 1068, 1069, 1394 |
| Csp6I | GTAC | 3 cut(s) | 563, 600, 1158 |
| CviAII | CATG | 5 cut(s) | 14, 56, 229, 889, 1200 |
| CviQI | GTAC | 3 cut(s) | 563, 600, 1158 |
| DdeI | CTNAG | 4 cut(s) | 167, 249, 603, 805 |
| DpnI | GATC | 6 cut(s) | 18, 664, 696, 773, 924, 1112 |
| DpnII | GATC | 6 cut(s) | 16, 662, 694, 771, 922, 1110 |
| DriI | GACNNNNNGTC | 1 cut(s) | 884 |
| EaeI | YGGCCR | 1 cut(s) | 690 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 884 |
| Ecl136II | GAGCTC | 1 cut(s) | 7 |
| Eco130I | CCWWGG | 1 cut(s) | 31 |
| Eco24I | GRGCYC | 2 cut(s) | 9, 1072 |
| Eco53kI | GAGCTC | 1 cut(s) | 7 |
| EcoICRI | GAGCTC | 1 cut(s) | 7 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1068, 1069 |
| EcoRI | GAATTC | 2 cut(s) | 321, 432 |
| EcoRII | CCWGG | 1 cut(s) | 713 |
| EcoT14I | CCWWGG | 1 cut(s) | 31 |
| EcoT22I | ATGCAT | 2 cut(s) | 709, 782 |
| EcoT38I | GRGCYC | 2 cut(s) | 9, 1072 |
| ErhI | CCWWGG | 1 cut(s) | 31 |
| FaeI | CATG | 5 cut(s) | 17, 59, 232, 892, 1203 |
| FatI | CATG | 5 cut(s) | 13, 55, 228, 888, 1199 |
| FauNDI | CATATG | 1 cut(s) | 1442 |
| Fnu4HI | GCNGC | 2 cut(s) | 172, 1383 |
| FokI | GGATG | 7 cut(s) | 14, 254, 438, 533, 694, 1069, 1319 |
| FriOI | GRGCYC | 2 cut(s) | 9, 1072 |
| Fsp4HI | GCNGC | 2 cut(s) | 172, 1383 |
| FspBI | CTAG | 4 cut(s) | 20, 801, 902, 1083 |
| FspI | TGCGCA | 1 cut(s) | 1358 |
| GlaI | GCGC | 4 cut(s) | 175, 944, 1224, 1358 |
| GluI | GCNGC | 2 cut(s) | 172, 1383 |
| GsuI | CTGGAG | 3 cut(s) | 902, 1001, 1215 |
| HaeIII | GGCC | 4 cut(s) | 200, 692, 1070, 1395 |
| HapII | CCGG | 2 cut(s) | 446, 1277 |
| HhaI | GCGC | 4 cut(s) | 176, 945, 1225, 1359 |
| Hin1II | CATG | 5 cut(s) | 17, 59, 232, 892, 1203 |
| Hin6I | GCGC | 4 cut(s) | 174, 943, 1223, 1357 |
| HinP1I | GCGC | 4 cut(s) | 174, 943, 1223, 1357 |
| HincII | GTYRAC | 1 cut(s) | 1206 |
| HindII | GTYRAC | 1 cut(s) | 1206 |
| HinfI | GANTC | 9 cut(s) | 127, 253, 378, 449, 576, 795, 823, 991, 1287 |
| HpaII | CCGG | 2 cut(s) | 446, 1277 |
| HphI | GGTGA | 1 cut(s) | 657 |
| Hpy166II | GTNNAC | 2 cut(s) | 1160, 1206 |
| Hpy188I | TCNGA | 4 cut(s) | 730, 808, 968, 1024 |
| Hpy188III | TCNNGA | 4 cut(s) | 682, 827, 952, 1175 |
| Hpy8I | GTNNAC | 2 cut(s) | 1160, 1206 |
| HpyAV | CCTTC | 5 cut(s) | 148, 298, 679, 758, 1054 |
| HpyCH4III | ACNGT | 3 cut(s) | 236, 279, 1263 |
| HpyCH4IV | ACGT | 2 cut(s) | 1076, 1302 |
| HpyCH4V | TGCA | 6 cut(s) | 524, 707, 764, 780, 892, 1199 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 110, 413, 1388 |
| HpyF3I | CTNAG | 4 cut(s) | 167, 249, 603, 805 |
| HpySE526I | ACGT | 2 cut(s) | 1076, 1302 |
| Hsp92II | CATG | 5 cut(s) | 17, 59, 232, 892, 1203 |
| HspAI | GCGC | 4 cut(s) | 174, 943, 1223, 1357 |
| KroI | GCCGGC | 1 cut(s) | 1276 |
| KroNI | GCCGGC | 1 cut(s) | 1278 |
| Kzo9I | GATC | 6 cut(s) | 16, 662, 694, 771, 922, 1110 |
| LmnI | GCTCC | 4 cut(s) | 4, 12, 500, 1234 |
| Lsp1109I | GCAGC | 2 cut(s) | 158, 1394 |
| LweI | GCATC | 5 cut(s) | 511, 694, 716, 1047, 1297 |
| MaeI | CTAG | 4 cut(s) | 20, 801, 902, 1083 |
| MaeII | ACGT | 2 cut(s) | 1076, 1302 |
| MaeIII | GTNAC | 2 cut(s) | 236, 840 |
| MalI | GATC | 6 cut(s) | 18, 664, 696, 773, 924, 1112 |
| MboI | GATC | 6 cut(s) | 16, 662, 694, 771, 922, 1110 |
| MboII | GAAGA | 6 cut(s) | 325, 567, 781, 900, 903, 1269 |
| MflI | RGATCY | 2 cut(s) | 771, 922 |
| MhlI | GDGCHC | 2 cut(s) | 9, 1072 |
| MluCI | AATT | 7 cut(s) | 140, 162, 321, 344, 432, 588, 1211 |
| MlyI | GAGTC | 4 cut(s) | 247, 443, 585, 832 |
| MmeI | TCCRAC | 3 cut(s) | 131, 1002, 1264 |
| Mph1103I | ATGCAT | 2 cut(s) | 709, 782 |
| MreI | CGCCGGCG | 1 cut(s) | 1276 |
| MroNI | GCCGGC | 1 cut(s) | 1276 |
| MroXI | GAANNNNTTC | 1 cut(s) | 436 |
| MseI | TTAA | 3 cut(s) | 143, 1187, 1293 |
| MspI | CCGG | 2 cut(s) | 446, 1277 |
| MspR9I | CCNGG | 2 cut(s) | 446, 715 |
| Mva1269I | GAATGC | 1 cut(s) | 780 |
| MvaI | CCWGG | 1 cut(s) | 715 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 110, 413, 1388 |
| NaeI | GCCGGC | 1 cut(s) | 1278 |
| NciI | CCSGG | 1 cut(s) | 446 |
| NdeI | CATATG | 1 cut(s) | 1442 |
| NdeII | GATC | 6 cut(s) | 16, 662, 694, 771, 922, 1110 |
| NgoMIV | GCCGGC | 1 cut(s) | 1276 |
| NlaIII | CATG | 5 cut(s) | 17, 59, 232, 892, 1203 |
| NlaIV | GGNNCC | 3 cut(s) | 924, 1070, 1396 |
| NmeAIII | GCCGAG | 2 cut(s) | 48, 535 |
| NsbI | TGCGCA | 1 cut(s) | 1358 |
| NsiI | ATGCAT | 2 cut(s) | 709, 782 |
| PctI | GAATGC | 1 cut(s) | 780 |
| PdiI | GCCGGC | 1 cut(s) | 1278 |
| PdmI | GAANNNNTTC | 1 cut(s) | 436 |
| PfeI | GAWTC | 5 cut(s) | 127, 378, 795, 991, 1287 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 688, 720 |
| PkrI | GCNGC | 2 cut(s) | 173, 1384 |
| PleI | GAGTC | 4 cut(s) | 247, 443, 584, 831 |
| PpsI | GAGTC | 4 cut(s) | 247, 443, 584, 831 |
| PshBI | ATTAAT | 1 cut(s) | 143 |
| PsiI | TTATAA | 1 cut(s) | 399 |
| Psp124BI | GAGCTC | 1 cut(s) | 9 |
| Psp6I | CCWGG | 1 cut(s) | 713 |
| PspGI | CCWGG | 1 cut(s) | 713 |
| PspN4I | GGNNCC | 3 cut(s) | 924, 1070, 1396 |
| PspOMI | GGGCCC | 1 cut(s) | 1068 |
| PspPI | GGNCC | 3 cut(s) | 1068, 1069, 1394 |
| PsuI | RGATCY | 2 cut(s) | 771, 922 |
| RsaI | GTAC | 3 cut(s) | 564, 601, 1159 |
| RsaNI | GTAC | 3 cut(s) | 563, 600, 1158 |
| SacI | GAGCTC | 1 cut(s) | 9 |
| SaqAI | TTAA | 3 cut(s) | 143, 1187, 1293 |
| SatI | GCNGC | 2 cut(s) | 172, 1383 |
| Sau3AI | GATC | 6 cut(s) | 16, 662, 694, 771, 922, 1110 |
| Sau96I | GGNCC | 3 cut(s) | 1068, 1069, 1394 |
| ScaI | AGTACT | 2 cut(s) | 564, 601 |
| SchI | GAGTC | 4 cut(s) | 247, 443, 585, 832 |
| ScrFI | CCNGG | 2 cut(s) | 446, 715 |
| SduI | GDGCHC | 2 cut(s) | 9, 1072 |
| SfaNI | GCATC | 5 cut(s) | 511, 694, 716, 1047, 1297 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1276 |
| SmlI | CTYRAG | 1 cut(s) | 1173 |
| SmoI | CTYRAG | 1 cut(s) | 1173 |
| Sse9I | AATT | 7 cut(s) | 140, 162, 321, 344, 432, 588, 1211 |
| SsiI | CCGC | 2 cut(s) | 1274, 1280 |
| SspI | AATATT | 1 cut(s) | 482 |
| SspMI | CTAG | 4 cut(s) | 20, 801, 902, 1083 |
| SstI | GAGCTC | 1 cut(s) | 9 |
| StyD4I | CCNGG | 2 cut(s) | 444, 713 |
| StyI | CCWWGG | 1 cut(s) | 31 |
| TaaI | ACNGT | 3 cut(s) | 236, 279, 1263 |
| TaiI | ACGT | 2 cut(s) | 1079, 1305 |
| TaqI | TCGA | 4 cut(s) | 134, 793, 877, 1333 |
| TaqII | GACCGA | 1 cut(s) | 779 |
| TasI | AATT | 7 cut(s) | 140, 162, 321, 344, 432, 588, 1211 |
| TatI | WGTACW | 2 cut(s) | 562, 599 |
| TfiI | GAWTC | 5 cut(s) | 127, 378, 795, 991, 1287 |
| Tru1I | TTAA | 3 cut(s) | 143, 1187, 1293 |
| Tru9I | TTAA | 3 cut(s) | 143, 1187, 1293 |
| TscAI | CASTG | 2 cut(s) | 84, 1372 |
| TseI | GCWGC | 2 cut(s) | 171, 1382 |
| TspDTI | ATGAA | 3 cut(s) | 66, 245, 314 |
| TspGWI | ACGGA | 2 cut(s) | 137, 642 |
| TspRI | CASTG | 2 cut(s) | 84, 1372 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 688, 720 |
| VspI | ATTAAT | 1 cut(s) | 143 |
| XapI | RAATTY | 4 cut(s) | 162, 321, 432, 1211 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 587 |
| XmnI | GAANNNNTTC | 1 cut(s) | 436 |
| XspI | CTAG | 4 cut(s) | 20, 801, 902, 1083 |
| ZrmI | AGTACT | 2 cut(s) | 564, 601 |
| Zsp2I | ATGCAT | 2 cut(s) | 709, 782 |