Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 453 |
| AclWI | GGATC | 1 cut(s) | 357 |
| AfaI | GTAC | 1 cut(s) | 428 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 251 |
| AgsI | TTSAA | 3 cut(s) | 14, 127, 323 |
| AjnI | CCWGG | 1 cut(s) | 255 |
| AluBI | AGCT | 1 cut(s) | 507 |
| AluI | AGCT | 1 cut(s) | 507 |
| Alw21I | GWGCWC | 1 cut(s) | 553 |
| Alw26I | GTCTC | 2 cut(s) | 44, 578 |
| AlwI | GGATC | 1 cut(s) | 357 |
| AoxI | GGCC | 1 cut(s) | 253 |
| ApeKI | GCWGC | 1 cut(s) | 208 |
| AspLEI | GCGC | 1 cut(s) | 518 |
| AspS9I | GGNCC | 1 cut(s) | 253 |
| AsuHPI | GGTGA | 3 cut(s) | 107, 182, 392 |
| AsuNHI | GCTAGC | 1 cut(s) | 359 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 581, 614 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 472, 504 |
| BbsI | GAAGAC | 1 cut(s) | 480 |
| Bbv12I | GWGCWC | 1 cut(s) | 553 |
| BbvI | GCAGC | 1 cut(s) | 195 |
| BccI | CCATC | 2 cut(s) | 167, 262 |
| BciT130I | CCWGG | 1 cut(s) | 257 |
| BcoDI | GTCTC | 2 cut(s) | 44, 578 |
| BfaI | CTAG | 2 cut(s) | 51, 360 |
| BisI | GCNGC | 1 cut(s) | 209 |
| BlsI | GCNGC | 1 cut(s) | 210 |
| Bme1390I | CCNGG | 1 cut(s) | 257 |
| BmgT120I | GGNCC | 1 cut(s) | 253 |
| BmrFI | CCNGG | 1 cut(s) | 257 |
| BmsI | GCATC | 4 cut(s) | 55, 92, 188, 527 |
| BmtI | GCTAGC | 1 cut(s) | 363 |
| BpiI | GAAGAC | 1 cut(s) | 480 |
| BpmI | CTGGAG | 2 cut(s) | 278, 565 |
| BpuEI | CTTGAG | 2 cut(s) | 29, 493 |
| BsaAI | YACGTR | 1 cut(s) | 451 |
| BsaJI | CCNNGG | 2 cut(s) | 203, 246 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 251 |
| BseBI | CCWGG | 1 cut(s) | 257 |
| BseDI | CCNNGG | 2 cut(s) | 203, 246 |
| BseGI | GGATG | 2 cut(s) | 83, 465 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 251 |
| BseMII | CTCAG | 1 cut(s) | 146 |
| BseRI | GAGGAG | 2 cut(s) | 32, 130 |
| BseXI | GCAGC | 1 cut(s) | 195 |
| BshFI | GGCC | 1 cut(s) | 255 |
| BsiHKAI | GWGCWC | 1 cut(s) | 553 |
| BslFI | GGGAC | 2 cut(s) | 209, 228 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 251 |
| BsmAI | GTCTC | 2 cut(s) | 44, 578 |
| BsmBI | CGTCTC | 1 cut(s) | 44 |
| BsmFI | GGGAC | 2 cut(s) | 209, 228 |
| BsnI | GGCC | 1 cut(s) | 255 |
| Bsp1286I | GDGCHC | 1 cut(s) | 553 |
| Bsp1407I | TGTACA | 1 cut(s) | 426 |
| Bsp143I | GATC | 1 cut(s) | 349 |
| Bsp19I | CCATGG | 1 cut(s) | 246 |
| BspANI | GGCC | 1 cut(s) | 255 |
| BspCNI | CTCAG | 1 cut(s) | 147 |
| BspOI | GCTAGC | 1 cut(s) | 363 |
| BspPI | GGATC | 1 cut(s) | 357 |
| BsrGI | TGTACA | 1 cut(s) | 426 |
| BssECI | CCNNGG | 2 cut(s) | 203, 246 |
| BssMI | GATC | 1 cut(s) | 349 |
| BssNAI | GTATAC | 1 cut(s) | 454 |
| BssT1I | CCWWGG | 2 cut(s) | 203, 246 |
| Bst1107I | GTATAC | 1 cut(s) | 454 |
| Bst2UI | CCWGG | 1 cut(s) | 257 |
| Bst4CI | ACNGT | 2 cut(s) | 24, 431 |
| Bst6I | CTCTTC | 2 cut(s) | 318, 431 |
| BstAUI | TGTACA | 1 cut(s) | 426 |
| BstBAI | YACGTR | 1 cut(s) | 451 |
| BstC8I | GCNNGC | 2 cut(s) | 361, 527 |
| BstDEI | CTNAG | 1 cut(s) | 155 |
| BstDSI | CCRYGG | 1 cut(s) | 246 |
| BstF5I | GGATG | 2 cut(s) | 83, 465 |
| BstHHI | GCGC | 1 cut(s) | 518 |
| BstKTI | GATC | 1 cut(s) | 352 |
| BstMAI | GTCTC | 2 cut(s) | 44, 578 |
| BstMBI | GATC | 1 cut(s) | 349 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 513, 522 |
| BstNI | CCWGG | 1 cut(s) | 257 |
| BstNSI | RCATGY | 1 cut(s) | 529 |
| BstSCI | CCNGG | 1 cut(s) | 255 |
| BstV1I | GCAGC | 1 cut(s) | 195 |
| BstV2I | GAAGAC | 1 cut(s) | 480 |
| BstX2I | RGATCY | 1 cut(s) | 349 |
| BstYI | RGATCY | 1 cut(s) | 349 |
| BstZ17I | GTATAC | 1 cut(s) | 454 |
| BsuRI | GGCC | 1 cut(s) | 255 |
| BtgI | CCRYGG | 1 cut(s) | 246 |
| BtsCI | GGATG | 2 cut(s) | 83, 465 |
| BtsIMutI | CAGTG | 1 cut(s) | 436 |
| Cac8I | GCNNGC | 2 cut(s) | 361, 527 |
| CfoI | GCGC | 1 cut(s) | 518 |
| Cfr13I | GGNCC | 1 cut(s) | 253 |
| CseI | GACGC | 1 cut(s) | 474 |
| Csp6I | GTAC | 1 cut(s) | 427 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 9, 44 |
| CviAII | CATG | 2 cut(s) | 247, 526 |
| CviQI | GTAC | 1 cut(s) | 427 |
| DdeI | CTNAG | 1 cut(s) | 155 |
| DpnI | GATC | 1 cut(s) | 351 |
| DpnII | GATC | 1 cut(s) | 349 |
| Eam1104I | CTCTTC | 2 cut(s) | 318, 431 |
| EarI | CTCTTC | 2 cut(s) | 318, 431 |
| Eco130I | CCWWGG | 2 cut(s) | 203, 246 |
| EcoO109I | RGGNCCY | 1 cut(s) | 253 |
| EcoRII | CCWGG | 1 cut(s) | 255 |
| EcoT14I | CCWWGG | 2 cut(s) | 203, 246 |
| EcoT22I | ATGCAT | 1 cut(s) | 531 |
| ErhI | CCWWGG | 2 cut(s) | 203, 246 |
| Esp3I | CGTCTC | 1 cut(s) | 44 |
| FaeI | CATG | 2 cut(s) | 250, 529 |
| FaiI | YATR | 8 cut(s) | 77, 140, 248, 365, 411, 454, 503, 527 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 585, 617 |
| FaqI | GGGAC | 2 cut(s) | 209, 228 |
| FatI | CATG | 2 cut(s) | 246, 525 |
| FblI | GTMKAC | 1 cut(s) | 453 |
| Fnu4HI | GCNGC | 1 cut(s) | 209 |
| FokI | GGATG | 2 cut(s) | 70, 472 |
| Fsp4HI | GCNGC | 1 cut(s) | 209 |
| FspBI | CTAG | 2 cut(s) | 51, 360 |
| GlaI | GCGC | 1 cut(s) | 517 |
| GluI | GCNGC | 1 cut(s) | 209 |
| GsuI | CTGGAG | 2 cut(s) | 278, 565 |
| HaeIII | GGCC | 1 cut(s) | 255 |
| HgaI | GACGC | 1 cut(s) | 474 |
| HhaI | GCGC | 1 cut(s) | 518 |
| Hin1II | CATG | 2 cut(s) | 250, 529 |
| Hin6I | GCGC | 1 cut(s) | 516 |
| HinP1I | GCGC | 1 cut(s) | 516 |
| HinfI | GANTC | 1 cut(s) | 262 |
| HphI | GGTGA | 3 cut(s) | 107, 182, 392 |
| Hpy166II | GTNNAC | 1 cut(s) | 454 |
| Hpy188I | TCNGA | 1 cut(s) | 267 |
| Hpy188III | TCNNGA | 4 cut(s) | 62, 124, 510, 544 |
| Hpy8I | GTNNAC | 1 cut(s) | 454 |
| HpyAV | CCTTC | 2 cut(s) | 461, 529 |
| HpyCH4III | ACNGT | 2 cut(s) | 24, 431 |
| HpyCH4IV | ACGT | 1 cut(s) | 450 |
| HpyCH4V | TGCA | 5 cut(s) | 68, 179, 525, 529, 618 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 513, 522 |
| HpyF3I | CTNAG | 1 cut(s) | 155 |
| HpySE526I | ACGT | 1 cut(s) | 450 |
| Hsp92II | CATG | 2 cut(s) | 250, 529 |
| HspAI | GCGC | 1 cut(s) | 516 |
| Kzo9I | GATC | 1 cut(s) | 349 |
| LpnPI | CCDG | 6 cut(s) | 75, 119, 242, 269, 442, 529 |
| Lsp1109I | GCAGC | 1 cut(s) | 195 |
| LweI | GCATC | 4 cut(s) | 55, 92, 188, 527 |
| MaeI | CTAG | 2 cut(s) | 51, 360 |
| MaeII | ACGT | 1 cut(s) | 450 |
| MaeIII | GTNAC | 1 cut(s) | 141 |
| MalI | GATC | 1 cut(s) | 351 |
| MboI | GATC | 1 cut(s) | 349 |
| MboII | GAAGA | 4 cut(s) | 335, 448, 480, 489 |
| MflI | RGATCY | 1 cut(s) | 349 |
| MhlI | GDGCHC | 1 cut(s) | 553 |
| MluCI | AATT | 1 cut(s) | 109 |
| MnlI | CCTC | 7 cut(s) | 53, 108, 244, 286, 337, 502, 506 |
| Mph1103I | ATGCAT | 1 cut(s) | 531 |
| MseI | TTAA | 5 cut(s) | 108, 228, 473, 603, 625 |
| MspR9I | CCNGG | 1 cut(s) | 257 |
| MvaI | CCWGG | 1 cut(s) | 257 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 513, 522 |
| NcoI | CCATGG | 1 cut(s) | 246 |
| NdeII | GATC | 1 cut(s) | 349 |
| NheI | GCTAGC | 1 cut(s) | 359 |
| NlaIII | CATG | 2 cut(s) | 250, 529 |
| NsiI | ATGCAT | 1 cut(s) | 531 |
| NspI | RCATGY | 1 cut(s) | 529 |
| PaeI | GCATGC | 1 cut(s) | 529 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 482 |
| PfeI | GAWTC | 1 cut(s) | 262 |
| PkrI | GCNGC | 1 cut(s) | 210 |
| Ppu21I | YACGTR | 1 cut(s) | 451 |
| Psp6I | CCWGG | 1 cut(s) | 255 |
| PspGI | CCWGG | 1 cut(s) | 255 |
| PspPI | GGNCC | 1 cut(s) | 253 |
| PsuI | RGATCY | 1 cut(s) | 349 |
| RsaI | GTAC | 1 cut(s) | 428 |
| RsaNI | GTAC | 1 cut(s) | 427 |
| SaqAI | TTAA | 5 cut(s) | 108, 228, 473, 603, 625 |
| SatI | GCNGC | 1 cut(s) | 209 |
| Sau3AI | GATC | 1 cut(s) | 349 |
| Sau96I | GGNCC | 1 cut(s) | 253 |
| ScrFI | CCNGG | 1 cut(s) | 257 |
| SduI | GDGCHC | 1 cut(s) | 553 |
| SetI | ASST | 6 cut(s) | 56, 220, 348, 370, 453, 509 |
| SfaNI | GCATC | 4 cut(s) | 55, 92, 188, 527 |
| SmlI | CTYRAG | 2 cut(s) | 44, 508 |
| SmoI | CTYRAG | 2 cut(s) | 44, 508 |
| SphI | GCATGC | 1 cut(s) | 529 |
| Sse9I | AATT | 1 cut(s) | 109 |
| SspMI | CTAG | 2 cut(s) | 51, 360 |
| StyD4I | CCNGG | 1 cut(s) | 255 |
| StyI | CCWWGG | 2 cut(s) | 203, 246 |
| TaaI | ACNGT | 2 cut(s) | 24, 431 |
| TaiI | ACGT | 1 cut(s) | 453 |
| TaqI | TCGA | 1 cut(s) | 553 |
| TaqII | GACCGA | 1 cut(s) | 479 |
| TasI | AATT | 1 cut(s) | 109 |
| TatI | WGTACW | 1 cut(s) | 426 |
| TfiI | GAWTC | 1 cut(s) | 262 |
| Tru1I | TTAA | 5 cut(s) | 108, 228, 473, 603, 625 |
| Tru9I | TTAA | 5 cut(s) | 108, 228, 473, 603, 625 |
| TscAI | CASTG | 1 cut(s) | 436 |
| TseI | GCWGC | 1 cut(s) | 208 |
| TspDTI | ATGAA | 1 cut(s) | 92 |
| TspGWI | ACGGA | 1 cut(s) | 356 |
| TspRI | CASTG | 1 cut(s) | 436 |
| XceI | RCATGY | 1 cut(s) | 529 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 253, 343 |
| XmiI | GTMKAC | 1 cut(s) | 453 |
| XspI | CTAG | 2 cut(s) | 51, 360 |
| Zsp2I | ATGCAT | 1 cut(s) | 531 |