ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 684 - 805 | 8.3e-20 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 741 |
| Acc36I | ACCTGC | 2 cut(s) | 1534, 2271 |
| Acc65I | GGTACC | 2 cut(s) | 391, 2230 |
| AccB1I | GGYRCC | 4 cut(s) | 391, 1570, 2120, 2230 |
| AccBSI | CCGCTC | 1 cut(s) | 1218 |
| AccI | GTMKAC | 3 cut(s) | 68, 238, 442 |
| AciI | CCGC | 4 cut(s) | 110, 1218, 2147, 2314 |
| AclWI | GGATC | 4 cut(s) | 42, 111, 1320, 2226 |
| AcoI | YGGCCR | 2 cut(s) | 1626, 2235 |
| AcsI | RAATTY | 4 cut(s) | 79, 251, 565, 957 |
| AfaI | GTAC | 4 cut(s) | 131, 393, 1635, 2232 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 126, 1338, 2033, 2153 |
| AgsI | TTSAA | 9 cut(s) | 56, 250, 272, 974, 1097, 1447, 1847, 2079, 2362 |
| AjiI | CACGTC | 1 cut(s) | 236 |
| AjnI | CCWGG | 1 cut(s) | 1628 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1839, 1871 |
| Alw21I | GWGCWC | 4 cut(s) | 151, 412, 2026, 2350 |
| Alw26I | GTCTC | 5 cut(s) | 80, 171, 472, 1933, 2240 |
| AlwI | GGATC | 4 cut(s) | 42, 111, 1320, 2226 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2275 |
| Ama87I | CYCGRG | 3 cut(s) | 95, 150, 2433 |
| AoxI | GGCC | 5 cut(s) | 1611, 1626, 1991, 2187, 2235 |
| ApeKI | GCWGC | 9 cut(s) | 199, 327, 1120, 1998, 2266, 2269, 2396, 2411, 2483 |
| ApoI | RAATTY | 4 cut(s) | 79, 251, 565, 957 |
| AseI | ATTAAT | 2 cut(s) | 1680, 2049 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 988 |
| Asp718I | GGTACC | 2 cut(s) | 391, 2230 |
| AspA2I | CCTAGG | 1 cut(s) | 22 |
| AspLEI | GCGC | 2 cut(s) | 742, 1255 |
| AsuHPI | GGTGA | 2 cut(s) | 290, 1492 |
| AsuII | TTCGAA | 2 cut(s) | 255, 1439 |
| AvaI | CYCGRG | 3 cut(s) | 95, 150, 2433 |
| AvrII | CCTAGG | 1 cut(s) | 22 |
| BaeGI | GKGCMC | 1 cut(s) | 1333 |
| BalI | TGGCCA | 1 cut(s) | 1628 |
| BanI | GGYRCC | 4 cut(s) | 391, 1570, 2120, 2230 |
| BanII | GRGCYC | 3 cut(s) | 2026, 2336, 2350 |
| BauI | CACGAG | 1 cut(s) | 1564 |
| Bbv12I | GWGCWC | 4 cut(s) | 151, 412, 2026, 2350 |
| BbvI | GCAGC | 9 cut(s) | 186, 339, 1107, 2010, 2278, 2281, 2398, 2408, 2495 |
| BccI | CCATC | 8 cut(s) | 281, 397, 611, 815, 1772, 2035, 2051, 2401 |
| BceAI | ACGGC | 1 cut(s) | 1626 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1939, 1973 |
| BciT130I | CCWGG | 1 cut(s) | 1630 |
| BciVI | GTATCC | 1 cut(s) | 807 |
| BclI | TGATCA | 2 cut(s) | 1239, 2068 |
| BcoDI | GTCTC | 5 cut(s) | 80, 171, 472, 1933, 2240 |
| BfmI | CTRYAG | 3 cut(s) | 200, 443, 687 |
| BfuAI | ACCTGC | 2 cut(s) | 1534, 2271 |
| BfuI | GTATCC | 1 cut(s) | 807 |
| BglII | AGATCT | 1 cut(s) | 1639 |
| BlnI | CCTAGG | 1 cut(s) | 22 |
| BlpI | GCTNAGC | 2 cut(s) | 1464, 2487 |
| Bme1390I | CCNGG | 1 cut(s) | 1630 |
| BmeT110I | CYCGRG | 3 cut(s) | 95, 150, 2433 |
| BmgBI | CACGTC | 1 cut(s) | 236 |
| BmiI | GGNNCC | 5 cut(s) | 393, 1572, 2122, 2232, 2335 |
| BmrFI | CCNGG | 1 cut(s) | 1630 |
| BmsI | GCATC | 4 cut(s) | 674, 769, 1530, 2423 |
| BoxI | GACNNNNGTC | 1 cut(s) | 163 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2237, 2269 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 1464, 2487 |
| Bpu14I | TTCGAA | 2 cut(s) | 255, 1439 |
| BpuEI | CTTGAG | 3 cut(s) | 1337, 1720, 1987 |
| Bsa29I | ATCGAT | 1 cut(s) | 1807 |
| BsaBI | GATNNNNATC | 1 cut(s) | 180 |
| BsaJI | CCNNGG | 3 cut(s) | 22, 1614, 1629 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 793, 823, 858, 888 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 126, 1338, 2033, 2153 |
| Bse118I | RCCGGY | 1 cut(s) | 2233 |
| Bse1I | ACTGG | 1 cut(s) | 1660 |
| Bse3DI | GCAATG | 4 cut(s) | 318, 1281, 1461, 2122 |
| Bse8I | GATNNNNATC | 1 cut(s) | 180 |
| BseBI | CCWGG | 1 cut(s) | 1630 |
| BseCI | ATCGAT | 1 cut(s) | 1807 |
| BseDI | CCNNGG | 3 cut(s) | 22, 1614, 1629 |
| BseGI | GGATG | 5 cut(s) | 784, 970, 1545, 1783, 2062 |
| BseJI | GATNNNNATC | 1 cut(s) | 180 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 126, 1338, 2033, 2153 |
| BseMI | GCAATG | 4 cut(s) | 318, 1281, 1461, 2122 |
| BseMII | CTCAG | 5 cut(s) | 75, 1928, 2141, 2270, 2478 |
| BseNI | ACTGG | 1 cut(s) | 1660 |
| BseRI | GAGGAG | 4 cut(s) | 1634, 2151, 2445, 2448 |
| BseSI | GKGCMC | 1 cut(s) | 1333 |
| BseXI | GCAGC | 9 cut(s) | 186, 339, 1107, 2010, 2278, 2281, 2398, 2408, 2495 |
| BsgI | GTGCAG | 4 cut(s) | 100, 231, 2285, 2299 |
| BshFI | GGCC | 5 cut(s) | 1613, 1628, 1993, 2189, 2237 |
| BshNI | GGYRCC | 4 cut(s) | 391, 1570, 2120, 2230 |
| BshVI | ATCGAT | 1 cut(s) | 1807 |
| BsiHKAI | GWGCWC | 4 cut(s) | 151, 412, 2026, 2350 |
| BsiHKCI | CYCGRG | 3 cut(s) | 95, 150, 2433 |
| BsiSI | CCGG | 1 cut(s) | 2234 |
| BslFI | GGGAC | 1 cut(s) | 173 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 126, 1338, 2033, 2153 |
| BsmAI | GTCTC | 5 cut(s) | 80, 171, 472, 1933, 2240 |
| BsmFI | GGGAC | 1 cut(s) | 173 |
| BsmI | GAATGC | 4 cut(s) | 742, 901, 1393, 1609 |
| BsnI | GGCC | 5 cut(s) | 1613, 1628, 1993, 2189, 2237 |
| BsoBI | CYCGRG | 3 cut(s) | 95, 150, 2433 |
| Bsp119I | TTCGAA | 2 cut(s) | 255, 1439 |
| Bsp1286I | GDGCHC | 6 cut(s) | 151, 412, 1333, 2026, 2336, 2350 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 1464, 2487 |
| BspACI | CCGC | 4 cut(s) | 110, 1218, 2147, 2314 |
| BspANI | GGCC | 5 cut(s) | 1613, 1628, 1993, 2189, 2237 |
| BspCNI | CTCAG | 5 cut(s) | 76, 1929, 2142, 2269, 2479 |
| BspDI | ATCGAT | 1 cut(s) | 1807 |
| BspHI | TCATGA | 1 cut(s) | 1102 |
| BspLI | GGNNCC | 5 cut(s) | 393, 1572, 2122, 2232, 2335 |
| BspMAI | CTGCAG | 1 cut(s) | 204 |
| BspMI | ACCTGC | 2 cut(s) | 1534, 2271 |
| BspPI | GGATC | 4 cut(s) | 42, 111, 1320, 2226 |
| BspQI | GCTCTTC | 1 cut(s) | 979 |
| BspT104I | TTCGAA | 2 cut(s) | 255, 1439 |
| BspT107I | GGYRCC | 4 cut(s) | 391, 1570, 2120, 2230 |
| BsrBI | CCGCTC | 1 cut(s) | 1218 |
| BsrDI | GCAATG | 4 cut(s) | 318, 1281, 1461, 2122 |
| BsrFI | RCCGGY | 1 cut(s) | 2233 |
| BsrI | ACTGG | 1 cut(s) | 1660 |
| BssAI | RCCGGY | 1 cut(s) | 2233 |
| BssECI | CCNNGG | 3 cut(s) | 22, 1614, 1629 |
| BssSI | CACGAG | 1 cut(s) | 1564 |
| BssT1I | CCWWGG | 2 cut(s) | 22, 1614 |
| Bst2BI | CACGAG | 1 cut(s) | 1564 |
| Bst2UI | CCWGG | 1 cut(s) | 1630 |
| Bst4CI | ACNGT | 3 cut(s) | 447, 508, 2277 |
| Bst6I | CTCTTC | 5 cut(s) | 293, 459, 979, 1404, 2374 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1460 |
| BstBI | TTCGAA | 2 cut(s) | 255, 1439 |
| BstC8I | GCNNGC | 9 cut(s) | 204, 325, 827, 1257, 1461, 1470, 2022, 2191, 2472 |
| BstDEI | CTNAG | 8 cut(s) | 84, 1182, 1464, 1730, 1937, 2150, 2256, 2487 |
| BstF5I | GGATG | 5 cut(s) | 784, 970, 1545, 1783, 2062 |
| BstHHI | GCGC | 2 cut(s) | 742, 1255 |
| BstMAI | GTCTC | 5 cut(s) | 80, 171, 472, 1933, 2240 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 1431, 1460, 1465, 1469, 2174, 2266, 2314, 2393, 2480 |
| BstNI | CCWGG | 1 cut(s) | 1630 |
| BstNSI | RCATGY | 2 cut(s) | 829, 2177 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 163 |
| BstSCI | CCNGG | 1 cut(s) | 1628 |
| BstSFI | CTRYAG | 3 cut(s) | 200, 443, 687 |
| BstSLI | GKGCMC | 1 cut(s) | 1333 |
| BstV1I | GCAGC | 9 cut(s) | 186, 339, 1107, 2010, 2278, 2281, 2398, 2408, 2495 |
| BstX2I | RGATCY | 3 cut(s) | 34, 1312, 1639 |
| BstYI | RGATCY | 3 cut(s) | 34, 1312, 1639 |
| Bsu15I | ATCGAT | 1 cut(s) | 1807 |
| BsuI | GTATCC | 1 cut(s) | 807 |
| BsuRI | GGCC | 5 cut(s) | 1613, 1628, 1993, 2189, 2237 |
| BsuTUI | ATCGAT | 1 cut(s) | 1807 |
| BtgZI | GCGATG | 1 cut(s) | 227 |
| BtrI | CACGTC | 1 cut(s) | 236 |
| BtsCI | GGATG | 5 cut(s) | 784, 970, 1545, 1783, 2062 |
| BtsIMutI | CAGTG | 2 cut(s) | 636, 1029 |
| BveI | ACCTGC | 2 cut(s) | 1534, 2271 |
| Cac8I | GCNNGC | 9 cut(s) | 204, 325, 827, 1257, 1461, 1470, 2022, 2191, 2472 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2275 |
| CciI | TCATGA | 1 cut(s) | 1102 |
| CfoI | GCGC | 2 cut(s) | 742, 1255 |
| Cfr10I | RCCGGY | 1 cut(s) | 2233 |
| ClaI | ATCGAT | 1 cut(s) | 1807 |
| CseI | GACGC | 2 cut(s) | 692, 741 |
| Csp6I | GTAC | 4 cut(s) | 130, 392, 1634, 2231 |
| CviQI | GTAC | 4 cut(s) | 130, 392, 1634, 2231 |
| DdeI | CTNAG | 8 cut(s) | 84, 1182, 1464, 1730, 1937, 2150, 2256, 2487 |
| DraI | TTTAAA | 1 cut(s) | 549 |
| EaeI | YGGCCR | 2 cut(s) | 1626, 2235 |
| Eam1104I | CTCTTC | 5 cut(s) | 293, 459, 979, 1404, 2374 |
| EarI | CTCTTC | 5 cut(s) | 293, 459, 979, 1404, 2374 |
| Ecl136II | GAGCTC | 2 cut(s) | 2024, 2348 |
| Eco130I | CCWWGG | 2 cut(s) | 22, 1614 |
| Eco147I | AGGCCT | 1 cut(s) | 1993 |
| Eco24I | GRGCYC | 3 cut(s) | 2026, 2336, 2350 |
| Eco32I | GATATC | 2 cut(s) | 136, 1112 |
| Eco53kI | GAGCTC | 2 cut(s) | 2024, 2348 |
| Eco88I | CYCGRG | 3 cut(s) | 95, 150, 2433 |
| EcoICRI | GAGCTC | 2 cut(s) | 2024, 2348 |
| EcoRI | GAATTC | 2 cut(s) | 79, 565 |
| EcoRII | CCWGG | 1 cut(s) | 1628 |
| EcoRV | GATATC | 2 cut(s) | 136, 1112 |
| EcoT14I | CCWWGG | 2 cut(s) | 22, 1614 |
| EcoT22I | ATGCAT | 2 cut(s) | 784, 1393 |
| EcoT38I | GRGCYC | 3 cut(s) | 2026, 2336, 2350 |
| ErhI | CCWWGG | 2 cut(s) | 22, 1614 |
| FaqI | GGGAC | 1 cut(s) | 173 |
| FauNDI | CATATG | 1 cut(s) | 2499 |
| FbaI | TGATCA | 2 cut(s) | 1239, 2068 |
| FblI | GTMKAC | 3 cut(s) | 68, 238, 442 |
| FokI | GGATG | 5 cut(s) | 791, 977, 1552, 1790, 2069 |
| FriOI | GRGCYC | 3 cut(s) | 2026, 2336, 2350 |
| FspI | TGCGCA | 1 cut(s) | 741 |
| GlaI | GCGC | 2 cut(s) | 741, 1254 |
| HaeIII | GGCC | 5 cut(s) | 1613, 1628, 1993, 2189, 2237 |
| HapII | CCGG | 1 cut(s) | 2234 |
| HgaI | GACGC | 2 cut(s) | 692, 741 |
| HhaI | GCGC | 2 cut(s) | 742, 1255 |
| Hin6I | GCGC | 2 cut(s) | 740, 1253 |
| HinP1I | GCGC | 2 cut(s) | 740, 1253 |
| HincII | GTYRAC | 4 cut(s) | 239, 504, 911, 1293 |
| HindII | GTYRAC | 4 cut(s) | 239, 504, 911, 1293 |
| HindIII | AAGCTT | 4 cut(s) | 543, 1187, 1257, 2181 |
| HpaI | GTTAAC | 2 cut(s) | 504, 1293 |
| HpaII | CCGG | 1 cut(s) | 2234 |
| HphI | GGTGA | 2 cut(s) | 290, 1492 |
| Hpy166II | GTNNAC | 9 cut(s) | 69, 239, 443, 504, 660, 911, 1293, 1549, 1580 |
| Hpy188I | TCNGA | 9 cut(s) | 85, 158, 171, 181, 1244, 1404, 1561, 1644, 2406 |
| Hpy8I | GTNNAC | 9 cut(s) | 69, 239, 443, 504, 660, 911, 1293, 1549, 1580 |
| Hpy99I | CGWCG | 1 cut(s) | 240 |
| HpyAV | CCTTC | 5 cut(s) | 549, 769, 1399, 1879, 2356 |
| HpyCH4III | ACNGT | 3 cut(s) | 447, 508, 2277 |
| HpyCH4IV | ACGT | 1 cut(s) | 235 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 1431, 1460, 1465, 1469, 2174, 2266, 2314, 2393, 2480 |
| HpyF3I | CTNAG | 8 cut(s) | 84, 1182, 1464, 1730, 1937, 2150, 2256, 2487 |
| HpySE526I | ACGT | 1 cut(s) | 235 |
| HspAI | GCGC | 2 cut(s) | 740, 1253 |
| KpnI | GGTACC | 2 cut(s) | 395, 2234 |
| Ksp22I | TGATCA | 2 cut(s) | 1239, 2068 |
| KspAI | GTTAAC | 2 cut(s) | 504, 1293 |
| LguI | GCTCTTC | 1 cut(s) | 979 |
| LmnI | GCTCC | 4 cut(s) | 866, 1220, 2029, 2339 |
| Lsp1109I | GCAGC | 9 cut(s) | 186, 339, 1107, 2010, 2278, 2281, 2398, 2408, 2495 |
| LweI | GCATC | 4 cut(s) | 674, 769, 1530, 2423 |
| MaeII | ACGT | 1 cut(s) | 235 |
| MaeIII | GTNAC | 5 cut(s) | 447, 456, 634, 721, 874 |
| MbiI | CCGCTC | 1 cut(s) | 1218 |
| MflI | RGATCY | 3 cut(s) | 34, 1312, 1639 |
| MhlI | GDGCHC | 6 cut(s) | 151, 412, 1333, 2026, 2336, 2350 |
| MlsI | TGGCCA | 1 cut(s) | 1628 |
| MluNI | TGGCCA | 1 cut(s) | 1628 |
| MlyI | GAGTC | 4 cut(s) | 87, 162, 1556, 2246 |
| MmeI | TCCRAC | 4 cut(s) | 181, 868, 1539, 1643 |
| Mox20I | TGGCCA | 1 cut(s) | 1628 |
| Mph1103I | ATGCAT | 2 cut(s) | 784, 1393 |
| MroXI | GAANNNNTTC | 1 cut(s) | 988 |
| MscI | TGGCCA | 1 cut(s) | 1628 |
| MslI | CAYNNNNRTG | 1 cut(s) | 653 |
| Msp20I | TGGCCA | 1 cut(s) | 1628 |
| MspA1I | CMGCKG | 3 cut(s) | 2149, 2168, 2486 |
| MspI | CCGG | 1 cut(s) | 2234 |
| MspR9I | CCNGG | 1 cut(s) | 1630 |
| Mva1269I | GAATGC | 4 cut(s) | 742, 901, 1393, 1609 |
| MvaI | CCWGG | 1 cut(s) | 1630 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 1431, 1460, 1465, 1469, 2174, 2266, 2314, 2393, 2480 |
| NdeI | CATATG | 1 cut(s) | 2499 |
| NlaIV | GGNNCC | 5 cut(s) | 393, 1572, 2122, 2232, 2335 |
| NmuCI | GTSAC | 4 cut(s) | 447, 456, 634, 721 |
| NsbI | TGCGCA | 1 cut(s) | 741 |
| NsiI | ATGCAT | 2 cut(s) | 784, 1393 |
| NspI | RCATGY | 2 cut(s) | 829, 2177 |
| NspV | TTCGAA | 2 cut(s) | 255, 1439 |
| PaeI | GCATGC | 1 cut(s) | 829 |
| PaeR7I | CTCGAG | 2 cut(s) | 150, 2433 |
| PagI | TCATGA | 1 cut(s) | 1102 |
| PceI | AGGCCT | 1 cut(s) | 1993 |
| PciSI | GCTCTTC | 1 cut(s) | 979 |
| PctI | GAATGC | 4 cut(s) | 742, 901, 1393, 1609 |
| PdmI | GAANNNNTTC | 1 cut(s) | 988 |
| PfeI | GAWTC | 6 cut(s) | 176, 571, 949, 1097, 1809, 1912 |
| PleI | GAGTC | 4 cut(s) | 87, 161, 1556, 2246 |
| PpsI | GAGTC | 4 cut(s) | 87, 161, 1556, 2246 |
| PshAI | GACNNNNGTC | 1 cut(s) | 163 |
| PshBI | ATTAAT | 2 cut(s) | 1680, 2049 |
| Psp124BI | GAGCTC | 2 cut(s) | 2026, 2350 |
| Psp6I | CCWGG | 1 cut(s) | 1628 |
| PspGI | CCWGG | 1 cut(s) | 1628 |
| PspN4I | GGNNCC | 5 cut(s) | 393, 1572, 2122, 2232, 2335 |
| PspXI | VCTCGAGB | 1 cut(s) | 150 |
| PstI | CTGCAG | 1 cut(s) | 204 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2275 |
| PsuI | RGATCY | 3 cut(s) | 34, 1312, 1639 |
| PvuII | CAGCTG | 2 cut(s) | 2168, 2486 |
| RsaI | GTAC | 4 cut(s) | 131, 393, 1635, 2232 |
| RsaNI | GTAC | 4 cut(s) | 130, 392, 1634, 2231 |
| RseI | CAYNNNNRTG | 1 cut(s) | 653 |
| SacI | GAGCTC | 2 cut(s) | 2026, 2350 |
| SalI | GTCGAC | 1 cut(s) | 237 |
| SapI | GCTCTTC | 1 cut(s) | 979 |
| SchI | GAGTC | 4 cut(s) | 87, 162, 1556, 2246 |
| ScrFI | CCNGG | 1 cut(s) | 1630 |
| SduI | GDGCHC | 6 cut(s) | 151, 412, 1333, 2026, 2336, 2350 |
| SfaNI | GCATC | 4 cut(s) | 674, 769, 1530, 2423 |
| SfcI | CTRYAG | 3 cut(s) | 200, 443, 687 |
| Sfr274I | CTCGAG | 2 cut(s) | 150, 2433 |
| SfuI | TTCGAA | 2 cut(s) | 255, 1439 |
| SlaI | CTCGAG | 2 cut(s) | 150, 2433 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 653 |
| SmlI | CTYRAG | 5 cut(s) | 150, 1316, 1735, 2002, 2433 |
| SmoI | CTYRAG | 5 cut(s) | 150, 1316, 1735, 2002, 2433 |
| SphI | GCATGC | 1 cut(s) | 829 |
| SseBI | AGGCCT | 1 cut(s) | 1993 |
| SsiI | CCGC | 4 cut(s) | 110, 1218, 2147, 2314 |
| SspI | AATATT | 1 cut(s) | 195 |
| SstI | GAGCTC | 2 cut(s) | 2026, 2350 |
| StuI | AGGCCT | 1 cut(s) | 1993 |
| StyD4I | CCNGG | 1 cut(s) | 1628 |
| StyI | CCWWGG | 2 cut(s) | 22, 1614 |
| TaaI | ACNGT | 3 cut(s) | 447, 508, 2277 |
| TaiI | ACGT | 1 cut(s) | 238 |
| TauI | GCSGC | 1 cut(s) | 2317 |
| TfiI | GAWTC | 6 cut(s) | 176, 571, 949, 1097, 1809, 1912 |
| TscAI | CASTG | 2 cut(s) | 643, 1029 |
| TseFI | GTSAC | 4 cut(s) | 447, 456, 634, 721 |
| TseI | GCWGC | 9 cut(s) | 199, 327, 1120, 1998, 2266, 2269, 2396, 2411, 2483 |
| Tsp45I | GTSAC | 4 cut(s) | 447, 456, 634, 721 |
| TspDTI | ATGAA | 5 cut(s) | 603, 749, 1077, 1119, 1904 |
| TspRI | CASTG | 2 cut(s) | 643, 1029 |
| VspI | ATTAAT | 2 cut(s) | 1680, 2049 |
| XapI | RAATTY | 4 cut(s) | 79, 251, 565, 957 |
| XbaI | TCTAGA | 1 cut(s) | 1832 |
| XceI | RCATGY | 2 cut(s) | 829, 2177 |
| XhoI | CTCGAG | 2 cut(s) | 150, 2433 |
| XmaJI | CCTAGG | 1 cut(s) | 22 |
| XmiI | GTMKAC | 3 cut(s) | 68, 238, 442 |
| XmnI | GAANNNNTTC | 1 cut(s) | 988 |
| Zsp2I | ATGCAT | 2 cut(s) | 784, 1393 |