Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 395 |
| AccIII | TCCGGA | 1 cut(s) | 686 |
| AclWI | GGATC | 1 cut(s) | 565 |
| AcoI | YGGCCR | 2 cut(s) | 611, 631 |
| AcsI | RAATTY | 1 cut(s) | 707 |
| AdeI | CACNNNGTG | 1 cut(s) | 86 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 129, 609, 636, 686 |
| AgeI | ACCGGT | 1 cut(s) | 671 |
| AgsI | TTSAA | 5 cut(s) | 254, 494, 512, 532, 562 |
| AjnI | CCWGG | 1 cut(s) | 574 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 474, 506 |
| AluBI | AGCT | 6 cut(s) | 8, 53, 167, 420, 500, 643 |
| AluI | AGCT | 6 cut(s) | 8, 53, 167, 420, 500, 643 |
| AlwI | GGATC | 1 cut(s) | 565 |
| Aor13HI | TCCGGA | 1 cut(s) | 686 |
| AoxI | GGCC | 2 cut(s) | 611, 631 |
| ApeKI | GCWGC | 3 cut(s) | 338, 592, 657 |
| ApoI | RAATTY | 1 cut(s) | 707 |
| AsiGI | ACCGGT | 1 cut(s) | 671 |
| AspA2I | CCTAGG | 1 cut(s) | 106 |
| AspS9I | GGNCC | 1 cut(s) | 689 |
| AsuHPI | GGTGA | 2 cut(s) | 338, 669 |
| AvaII | GGWCC | 1 cut(s) | 689 |
| AvrII | CCTAGG | 1 cut(s) | 106 |
| BanI | GGYRCC | 1 cut(s) | 395 |
| BbvI | GCAGC | 3 cut(s) | 325, 579, 669 |
| BccI | CCATC | 3 cut(s) | 171, 185, 688 |
| BciT130I | CCWGG | 1 cut(s) | 576 |
| BclI | TGATCA | 1 cut(s) | 217 |
| BfaI | CTAG | 3 cut(s) | 107, 147, 383 |
| BisI | GCNGC | 3 cut(s) | 339, 593, 658 |
| BlnI | CCTAGG | 1 cut(s) | 106 |
| BlsI | GCNGC | 3 cut(s) | 340, 594, 659 |
| Bme1390I | CCNGG | 1 cut(s) | 576 |
| Bme18I | GGWCC | 1 cut(s) | 689 |
| BmgT120I | GGNCC | 1 cut(s) | 689 |
| BmiI | GGNNCC | 2 cut(s) | 228, 397 |
| BmrFI | CCNGG | 1 cut(s) | 576 |
| BmsI | GCATC | 2 cut(s) | 103, 275 |
| BsaJI | CCNNGG | 2 cut(s) | 106, 574 |
| BsaWI | WCCGGW | 3 cut(s) | 636, 671, 686 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 129, 609, 636, 686 |
| Bse118I | RCCGGY | 4 cut(s) | 588, 609, 629, 671 |
| Bse1I | ACTGG | 1 cut(s) | 155 |
| BseAI | TCCGGA | 1 cut(s) | 686 |
| BseBI | CCWGG | 1 cut(s) | 576 |
| BseDI | CCNNGG | 2 cut(s) | 106, 574 |
| BseGI | GGATG | 1 cut(s) | 118 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 129, 609, 636, 686 |
| BseNI | ACTGG | 1 cut(s) | 155 |
| BseRI | GAGGAG | 1 cut(s) | 148 |
| BseX3I | CGGCCG | 1 cut(s) | 611 |
| BseXI | GCAGC | 3 cut(s) | 325, 579, 669 |
| Bsh1285I | CGRYCG | 1 cut(s) | 614 |
| BshFI | GGCC | 2 cut(s) | 613, 633 |
| BshNI | GGYRCC | 1 cut(s) | 395 |
| BshTI | ACCGGT | 1 cut(s) | 671 |
| BsiEI | CGRYCG | 1 cut(s) | 614 |
| BsiSI | CCGG | 6 cut(s) | 589, 610, 630, 637, 672, 687 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 129, 609, 636, 686 |
| BsmI | GAATGC | 1 cut(s) | 375 |
| BsnI | GGCC | 2 cut(s) | 613, 633 |
| Bsp13I | TCCGGA | 1 cut(s) | 686 |
| Bsp143I | GATC | 2 cut(s) | 217, 570 |
| BspANI | GGCC | 2 cut(s) | 613, 633 |
| BspEI | TCCGGA | 1 cut(s) | 686 |
| BspLI | GGNNCC | 2 cut(s) | 228, 397 |
| BspPI | GGATC | 1 cut(s) | 565 |
| BspT107I | GGYRCC | 1 cut(s) | 395 |
| BsrFI | RCCGGY | 4 cut(s) | 588, 609, 629, 671 |
| BsrI | ACTGG | 1 cut(s) | 155 |
| BssAI | RCCGGY | 4 cut(s) | 588, 609, 629, 671 |
| BssECI | CCNNGG | 2 cut(s) | 106, 574 |
| BssMI | GATC | 2 cut(s) | 217, 570 |
| BssT1I | CCWWGG | 1 cut(s) | 106 |
| Bst2UI | CCWGG | 1 cut(s) | 576 |
| Bst4CI | ACNGT | 1 cut(s) | 445 |
| BstF5I | GGATG | 1 cut(s) | 118 |
| BstKTI | GATC | 2 cut(s) | 220, 573 |
| BstMBI | GATC | 2 cut(s) | 217, 570 |
| BstMCI | CGRYCG | 1 cut(s) | 614 |
| BstNI | CCWGG | 1 cut(s) | 576 |
| BstSCI | CCNGG | 1 cut(s) | 574 |
| BstV1I | GCAGC | 3 cut(s) | 325, 579, 669 |
| BstZI | CGGCCG | 1 cut(s) | 611 |
| BsuRI | GGCC | 2 cut(s) | 613, 633 |
| BtsCI | GGATG | 1 cut(s) | 118 |
| BtsI | GCAGTG | 1 cut(s) | 320 |
| BtsIMutI | CAGTG | 1 cut(s) | 320 |
| Cfr10I | RCCGGY | 4 cut(s) | 588, 609, 629, 671 |
| Cfr13I | GGNCC | 1 cut(s) | 689 |
| CspAI | ACCGGT | 1 cut(s) | 671 |
| CviAII | CATG | 2 cut(s) | 215, 431 |
| DpnI | GATC | 2 cut(s) | 219, 572 |
| DpnII | GATC | 2 cut(s) | 217, 570 |
| DraIII | CACNNNGTG | 1 cut(s) | 86 |
| EaeI | YGGCCR | 2 cut(s) | 611, 631 |
| EagI | CGGCCG | 1 cut(s) | 611 |
| EclXI | CGGCCG | 1 cut(s) | 611 |
| Eco130I | CCWWGG | 1 cut(s) | 106 |
| Eco47I | GGWCC | 1 cut(s) | 689 |
| Eco52I | CGGCCG | 1 cut(s) | 611 |
| EcoRII | CCWGG | 1 cut(s) | 574 |
| EcoT14I | CCWWGG | 1 cut(s) | 106 |
| ErhI | CCWWGG | 1 cut(s) | 106 |
| FaeI | CATG | 2 cut(s) | 218, 434 |
| FaiI | YATR | 8 cut(s) | 50, 61, 216, 336, 393, 432, 648, 650 |
| FatI | CATG | 2 cut(s) | 214, 430 |
| FbaI | TGATCA | 1 cut(s) | 217 |
| Fnu4HI | GCNGC | 3 cut(s) | 339, 593, 658 |
| FokI | GGATG | 1 cut(s) | 125 |
| Fsp4HI | GCNGC | 3 cut(s) | 339, 593, 658 |
| FspBI | CTAG | 3 cut(s) | 107, 147, 383 |
| GluI | GCNGC | 3 cut(s) | 339, 593, 658 |
| HaeIII | GGCC | 2 cut(s) | 613, 633 |
| HapII | CCGG | 6 cut(s) | 589, 610, 630, 637, 672, 687 |
| Hin1II | CATG | 2 cut(s) | 218, 434 |
| HinfI | GANTC | 4 cut(s) | 319, 490, 512, 579 |
| HpaII | CCGG | 6 cut(s) | 589, 610, 630, 637, 672, 687 |
| HphI | GGTGA | 2 cut(s) | 338, 669 |
| Hpy166II | GTNNAC | 2 cut(s) | 441, 677 |
| Hpy188I | TCNGA | 3 cut(s) | 206, 305, 517 |
| Hpy188III | TCNNGA | 5 cut(s) | 323, 448, 494, 583, 687 |
| Hpy8I | GTNNAC | 2 cut(s) | 441, 677 |
| HpyAV | CCTTC | 2 cut(s) | 48, 133 |
| HpyCH4III | ACNGT | 1 cut(s) | 445 |
| HpyCH4V | TGCA | 2 cut(s) | 116, 266 |
| Hsp92II | CATG | 2 cut(s) | 218, 434 |
| Kpn2I | TCCGGA | 1 cut(s) | 686 |
| Ksp22I | TGATCA | 1 cut(s) | 217 |
| Kzo9I | GATC | 2 cut(s) | 217, 570 |
| LmnI | GCTCC | 2 cut(s) | 417, 648 |
| Lsp1109I | GCAGC | 3 cut(s) | 325, 579, 669 |
| LweI | GCATC | 2 cut(s) | 103, 275 |
| MaeI | CTAG | 3 cut(s) | 107, 147, 383 |
| MaeIII | GTNAC | 1 cut(s) | 28 |
| MalI | GATC | 2 cut(s) | 219, 572 |
| MboI | GATC | 2 cut(s) | 217, 570 |
| MboII | GAAGA | 2 cut(s) | 574, 675 |
| MfeI | CAATTG | 1 cut(s) | 261 |
| MluCI | AATT | 6 cut(s) | 24, 56, 261, 410, 696, 707 |
| MlyI | GAGTC | 1 cut(s) | 588 |
| MmeI | TCCRAC | 1 cut(s) | 166 |
| MnlI | CCTC | 7 cut(s) | 126, 130, 257, 390, 555, 561, 702 |
| MroI | TCCGGA | 1 cut(s) | 686 |
| MseI | TTAA | 1 cut(s) | 161 |
| MspA1I | CMGCKG | 1 cut(s) | 167 |
| MspI | CCGG | 6 cut(s) | 589, 610, 630, 637, 672, 687 |
| MspR9I | CCNGG | 1 cut(s) | 576 |
| MunI | CAATTG | 1 cut(s) | 261 |
| Mva1269I | GAATGC | 1 cut(s) | 375 |
| MvaI | CCWGG | 1 cut(s) | 576 |
| NdeII | GATC | 2 cut(s) | 217, 570 |
| NlaIII | CATG | 2 cut(s) | 218, 434 |
| NlaIV | GGNNCC | 2 cut(s) | 228, 397 |
| PctI | GAATGC | 1 cut(s) | 375 |
| PfeI | GAWTC | 3 cut(s) | 319, 490, 512 |
| PinAI | ACCGGT | 1 cut(s) | 671 |
| PkrI | GCNGC | 3 cut(s) | 340, 594, 659 |
| PleI | GAGTC | 1 cut(s) | 587 |
| PpsI | GAGTC | 1 cut(s) | 587 |
| Psp6I | CCWGG | 1 cut(s) | 574 |
| PspGI | CCWGG | 1 cut(s) | 574 |
| PspN4I | GGNNCC | 2 cut(s) | 228, 397 |
| PspPI | GGNCC | 1 cut(s) | 689 |
| PvuII | CAGCTG | 1 cut(s) | 167 |
| SaqAI | TTAA | 1 cut(s) | 161 |
| SatI | GCNGC | 3 cut(s) | 339, 593, 658 |
| Sau3AI | GATC | 2 cut(s) | 217, 570 |
| Sau96I | GGNCC | 1 cut(s) | 689 |
| SchI | GAGTC | 1 cut(s) | 588 |
| ScrFI | CCNGG | 1 cut(s) | 576 |
| SfaNI | GCATC | 2 cut(s) | 103, 275 |
| SinI | GGWCC | 1 cut(s) | 689 |
| Sse9I | AATT | 6 cut(s) | 24, 56, 261, 410, 696, 707 |
| SspI | AATATT | 1 cut(s) | 665 |
| SspMI | CTAG | 3 cut(s) | 107, 147, 383 |
| StyD4I | CCNGG | 1 cut(s) | 574 |
| StyI | CCWWGG | 1 cut(s) | 106 |
| TaaI | ACNGT | 1 cut(s) | 445 |
| TaqI | TCGA | 3 cut(s) | 175, 388, 569 |
| TasI | AATT | 6 cut(s) | 24, 56, 261, 410, 696, 707 |
| TfiI | GAWTC | 3 cut(s) | 319, 490, 512 |
| Tru1I | TTAA | 1 cut(s) | 161 |
| Tru9I | TTAA | 1 cut(s) | 161 |
| TscAI | CASTG | 1 cut(s) | 320 |
| TseI | GCWGC | 3 cut(s) | 338, 592, 657 |
| TspDTI | ATGAA | 1 cut(s) | 30 |
| TspRI | CASTG | 1 cut(s) | 320 |
| VpaK11BI | GGWCC | 1 cut(s) | 689 |
| XapI | RAATTY | 1 cut(s) | 707 |
| XmaJI | CCTAGG | 1 cut(s) | 106 |
| XspI | CTAG | 3 cut(s) | 107, 147, 383 |