Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 281, 354 |
| Acc65I | GGTACC | 1 cut(s) | 139 |
| AccB1I | GGYRCC | 2 cut(s) | 133, 139 |
| AciI | CCGC | 1 cut(s) | 82 |
| AclWI | GGATC | 1 cut(s) | 324 |
| AcsI | RAATTY | 1 cut(s) | 148 |
| AfaI | GTAC | 4 cut(s) | 141, 301, 480, 615 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 176 |
| AflIII | ACRYGT | 1 cut(s) | 475 |
| AgsI | TTSAA | 4 cut(s) | 89, 518, 625, 670 |
| AhlI | ACTAGT | 1 cut(s) | 608 |
| AluBI | AGCT | 4 cut(s) | 20, 277, 423, 511 |
| AluI | AGCT | 4 cut(s) | 20, 277, 423, 511 |
| Alw21I | GWGCWC | 1 cut(s) | 475 |
| Alw26I | GTCTC | 1 cut(s) | 599 |
| Alw44I | GTGCAC | 1 cut(s) | 471 |
| AlwI | GGATC | 1 cut(s) | 324 |
| Ama87I | CYCGRG | 1 cut(s) | 182 |
| AoxI | GGCC | 3 cut(s) | 55, 396, 662 |
| ApaLI | GTGCAC | 1 cut(s) | 471 |
| ApeKI | GCWGC | 3 cut(s) | 79, 103, 692 |
| ApoI | RAATTY | 1 cut(s) | 148 |
| AseI | ATTAAT | 3 cut(s) | 210, 323, 699 |
| Asp718I | GGTACC | 1 cut(s) | 139 |
| AspS9I | GGNCC | 2 cut(s) | 397, 662 |
| AsuHPI | GGTGA | 1 cut(s) | 278 |
| AsuII | TTCGAA | 1 cut(s) | 215 |
| AvaI | CYCGRG | 1 cut(s) | 182 |
| BaeGI | GKGCMC | 1 cut(s) | 475 |
| BanI | GGYRCC | 2 cut(s) | 133, 139 |
| Bbv12I | GWGCWC | 1 cut(s) | 475 |
| BbvI | GCAGC | 3 cut(s) | 66, 115, 704 |
| BccI | CCATC | 1 cut(s) | 629 |
| BciVI | GTATCC | 1 cut(s) | 299 |
| BcoDI | GTCTC | 1 cut(s) | 599 |
| BcuI | ACTAGT | 1 cut(s) | 608 |
| BfaI | CTAG | 3 cut(s) | 303, 420, 609 |
| BfmI | CTRYAG | 1 cut(s) | 361 |
| BfuI | GTATCC | 1 cut(s) | 299 |
| BisI | GCNGC | 3 cut(s) | 80, 104, 693 |
| BlsI | GCNGC | 3 cut(s) | 81, 105, 694 |
| BmcAI | AGTACT | 1 cut(s) | 301 |
| BmeT110I | CYCGRG | 1 cut(s) | 182 |
| BmgT120I | GGNCC | 2 cut(s) | 397, 662 |
| BmiI | GGNNCC | 5 cut(s) | 25, 135, 141, 399, 663 |
| BpmI | CTGGAG | 1 cut(s) | 400 |
| Bpu14I | TTCGAA | 1 cut(s) | 215 |
| Bsa29I | ATCGAT | 1 cut(s) | 319 |
| BsaJI | CCNNGG | 1 cut(s) | 143 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 26 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 176 |
| Bse118I | RCCGGY | 1 cut(s) | 136 |
| Bse1I | ACTGG | 1 cut(s) | 312 |
| BseCI | ATCGAT | 1 cut(s) | 319 |
| BseDI | CCNNGG | 1 cut(s) | 143 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 176 |
| BseMII | CTCAG | 1 cut(s) | 438 |
| BseNI | ACTGG | 1 cut(s) | 312 |
| BseRI | GAGGAG | 1 cut(s) | 200 |
| BseSI | GKGCMC | 1 cut(s) | 475 |
| BseXI | GCAGC | 3 cut(s) | 66, 115, 704 |
| BshFI | GGCC | 3 cut(s) | 57, 398, 664 |
| BshNI | GGYRCC | 2 cut(s) | 133, 139 |
| BshVI | ATCGAT | 1 cut(s) | 319 |
| BsiHKAI | GWGCWC | 1 cut(s) | 475 |
| BsiHKCI | CYCGRG | 1 cut(s) | 182 |
| BsiSI | CCGG | 1 cut(s) | 137 |
| BslFI | GGGAC | 1 cut(s) | 192 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 176 |
| BsmAI | GTCTC | 1 cut(s) | 599 |
| BsmFI | GGGAC | 1 cut(s) | 192 |
| BsmI | GAATGC | 1 cut(s) | 463 |
| BsnI | GGCC | 3 cut(s) | 57, 398, 664 |
| BsoBI | CYCGRG | 1 cut(s) | 182 |
| Bsp119I | TTCGAA | 1 cut(s) | 215 |
| Bsp1286I | GDGCHC | 1 cut(s) | 475 |
| Bsp1407I | TGTACA | 1 cut(s) | 613 |
| Bsp143I | GATC | 3 cut(s) | 316, 550, 685 |
| BspACI | CCGC | 1 cut(s) | 82 |
| BspANI | GGCC | 3 cut(s) | 57, 398, 664 |
| BspCNI | CTCAG | 1 cut(s) | 437 |
| BspDI | ATCGAT | 1 cut(s) | 319 |
| BspLI | GGNNCC | 5 cut(s) | 25, 135, 141, 399, 663 |
| BspPI | GGATC | 1 cut(s) | 324 |
| BspT104I | TTCGAA | 1 cut(s) | 215 |
| BspT107I | GGYRCC | 2 cut(s) | 133, 139 |
| BsrFI | RCCGGY | 1 cut(s) | 136 |
| BsrGI | TGTACA | 1 cut(s) | 613 |
| BsrI | ACTGG | 1 cut(s) | 312 |
| BssAI | RCCGGY | 1 cut(s) | 136 |
| BssECI | CCNNGG | 1 cut(s) | 143 |
| BssMI | GATC | 3 cut(s) | 316, 550, 685 |
| Bst4CI | ACNGT | 2 cut(s) | 255, 632 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 79 |
| BstAUI | TGTACA | 1 cut(s) | 613 |
| BstBI | TTCGAA | 1 cut(s) | 215 |
| BstC8I | GCNNGC | 1 cut(s) | 55 |
| BstDEI | CTNAG | 4 cut(s) | 9, 245, 296, 424 |
| BstDSI | CCRYGG | 1 cut(s) | 143 |
| BstKTI | GATC | 3 cut(s) | 319, 553, 688 |
| BstMAI | GTCTC | 1 cut(s) | 599 |
| BstMBI | GATC | 3 cut(s) | 316, 550, 685 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 79 |
| BstNSI | RCATGY | 1 cut(s) | 479 |
| BstSFI | CTRYAG | 1 cut(s) | 361 |
| BstSLI | GKGCMC | 1 cut(s) | 475 |
| BstV1I | GCAGC | 3 cut(s) | 66, 115, 704 |
| Bsu15I | ATCGAT | 1 cut(s) | 319 |
| BsuI | GTATCC | 1 cut(s) | 299 |
| BsuRI | GGCC | 3 cut(s) | 57, 398, 664 |
| BsuTUI | ATCGAT | 1 cut(s) | 319 |
| BtgI | CCRYGG | 1 cut(s) | 143 |
| BtsI | GCAGTG | 1 cut(s) | 537 |
| BtsIMutI | CAGTG | 1 cut(s) | 537 |
| Cac8I | GCNNGC | 1 cut(s) | 55 |
| Cfr10I | RCCGGY | 1 cut(s) | 136 |
| Cfr13I | GGNCC | 2 cut(s) | 397, 662 |
| ClaI | ATCGAT | 1 cut(s) | 319 |
| Csp6I | GTAC | 4 cut(s) | 140, 300, 479, 614 |
| CviAII | CATG | 5 cut(s) | 36, 122, 476, 689, 707 |
| CviQI | GTAC | 4 cut(s) | 140, 300, 479, 614 |
| DdeI | CTNAG | 4 cut(s) | 9, 245, 296, 424 |
| DpnI | GATC | 3 cut(s) | 318, 552, 687 |
| DpnII | GATC | 3 cut(s) | 316, 550, 685 |
| Eco88I | CYCGRG | 1 cut(s) | 182 |
| EcoO109I | RGGNCCY | 2 cut(s) | 397, 662 |
| FaeI | CATG | 5 cut(s) | 39, 125, 479, 692, 710 |
| FaqI | GGGAC | 1 cut(s) | 192 |
| FatI | CATG | 5 cut(s) | 35, 121, 475, 688, 706 |
| Fnu4HI | GCNGC | 3 cut(s) | 80, 104, 693 |
| Fsp4HI | GCNGC | 3 cut(s) | 80, 104, 693 |
| FspBI | CTAG | 3 cut(s) | 303, 420, 609 |
| GluI | GCNGC | 3 cut(s) | 80, 104, 693 |
| GsuI | CTGGAG | 1 cut(s) | 400 |
| HaeIII | GGCC | 3 cut(s) | 57, 398, 664 |
| HapII | CCGG | 1 cut(s) | 137 |
| Hin1II | CATG | 5 cut(s) | 39, 125, 479, 692, 710 |
| HincII | GTYRAC | 1 cut(s) | 238 |
| HindII | GTYRAC | 1 cut(s) | 238 |
| HinfI | GANTC | 3 cut(s) | 180, 386, 522 |
| HpaII | CCGG | 1 cut(s) | 137 |
| HphI | GGTGA | 1 cut(s) | 278 |
| Hpy166II | GTNNAC | 5 cut(s) | 238, 251, 473, 562, 614 |
| Hpy188I | TCNGA | 1 cut(s) | 555 |
| Hpy188III | TCNNGA | 3 cut(s) | 379, 505, 625 |
| Hpy8I | GTNNAC | 5 cut(s) | 238, 251, 473, 562, 614 |
| HpyAV | CCTTC | 3 cut(s) | 211, 337, 388 |
| HpyCH4III | ACNGT | 2 cut(s) | 255, 632 |
| HpyCH4V | TGCA | 3 cut(s) | 473, 692, 706 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 79 |
| HpyF3I | CTNAG | 4 cut(s) | 9, 245, 296, 424 |
| Hsp92II | CATG | 5 cut(s) | 39, 125, 479, 692, 710 |
| KpnI | GGTACC | 1 cut(s) | 143 |
| Kzo9I | GATC | 3 cut(s) | 316, 550, 685 |
| LmnI | GCTCC | 2 cut(s) | 70, 274 |
| LpnPI | CCDG | 9 cut(s) | 6, 39, 150, 248, 293, 364, 490, 562, 582 |
| Lsp1109I | GCAGC | 3 cut(s) | 66, 115, 704 |
| MaeI | CTAG | 3 cut(s) | 303, 420, 609 |
| MalI | GATC | 3 cut(s) | 318, 552, 687 |
| MboI | GATC | 3 cut(s) | 316, 550, 685 |
| MhlI | GDGCHC | 1 cut(s) | 475 |
| MluCI | AATT | 4 cut(s) | 148, 211, 671, 700 |
| MlyI | GAGTC | 2 cut(s) | 174, 395 |
| MmeI | TCCRAC | 1 cut(s) | 412 |
| MseI | TTAA | 4 cut(s) | 210, 323, 674, 699 |
| MspI | CCGG | 1 cut(s) | 137 |
| Mva1269I | GAATGC | 1 cut(s) | 463 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 79 |
| NdeII | GATC | 3 cut(s) | 316, 550, 685 |
| NlaIII | CATG | 5 cut(s) | 39, 125, 479, 692, 710 |
| NlaIV | GGNNCC | 5 cut(s) | 25, 135, 141, 399, 663 |
| NspI | RCATGY | 1 cut(s) | 479 |
| NspV | TTCGAA | 1 cut(s) | 215 |
| PaeR7I | CTCGAG | 1 cut(s) | 182 |
| PciI | ACATGT | 1 cut(s) | 475 |
| PctI | GAATGC | 1 cut(s) | 463 |
| PfeI | GAWTC | 1 cut(s) | 522 |
| PkrI | GCNGC | 3 cut(s) | 81, 105, 694 |
| PleI | GAGTC | 2 cut(s) | 174, 394 |
| PpsI | GAGTC | 2 cut(s) | 174, 394 |
| PscI | ACATGT | 1 cut(s) | 475 |
| PshBI | ATTAAT | 3 cut(s) | 210, 323, 699 |
| PsiI | TTATAA | 2 cut(s) | 281, 354 |
| PspN4I | GGNNCC | 5 cut(s) | 25, 135, 141, 399, 663 |
| PspPI | GGNCC | 2 cut(s) | 397, 662 |
| PspXI | VCTCGAGB | 1 cut(s) | 182 |
| RsaI | GTAC | 4 cut(s) | 141, 301, 480, 615 |
| RsaNI | GTAC | 4 cut(s) | 140, 300, 479, 614 |
| SaqAI | TTAA | 4 cut(s) | 210, 323, 674, 699 |
| SatI | GCNGC | 3 cut(s) | 80, 104, 693 |
| Sau3AI | GATC | 3 cut(s) | 316, 550, 685 |
| Sau96I | GGNCC | 2 cut(s) | 397, 662 |
| ScaI | AGTACT | 1 cut(s) | 301 |
| SchI | GAGTC | 2 cut(s) | 174, 395 |
| SduI | GDGCHC | 1 cut(s) | 475 |
| SfcI | CTRYAG | 1 cut(s) | 361 |
| Sfr274I | CTCGAG | 1 cut(s) | 182 |
| SfuI | TTCGAA | 1 cut(s) | 215 |
| SlaI | CTCGAG | 1 cut(s) | 182 |
| SmlI | CTYRAG | 1 cut(s) | 182 |
| SmoI | CTYRAG | 1 cut(s) | 182 |
| SpeI | ACTAGT | 1 cut(s) | 608 |
| Sse9I | AATT | 4 cut(s) | 148, 211, 671, 700 |
| SsiI | CCGC | 1 cut(s) | 82 |
| SspMI | CTAG | 3 cut(s) | 303, 420, 609 |
| TaaI | ACNGT | 2 cut(s) | 255, 632 |
| TaqI | TCGA | 4 cut(s) | 183, 215, 319, 389 |
| TasI | AATT | 4 cut(s) | 148, 211, 671, 700 |
| TatI | WGTACW | 2 cut(s) | 299, 613 |
| TfiI | GAWTC | 1 cut(s) | 522 |
| Tru1I | TTAA | 4 cut(s) | 210, 323, 674, 699 |
| Tru9I | TTAA | 4 cut(s) | 210, 323, 674, 699 |
| TscAI | CASTG | 1 cut(s) | 544 |
| TseI | GCWGC | 3 cut(s) | 79, 103, 692 |
| TspDTI | ATGAA | 1 cut(s) | 142 |
| TspGWI | ACGGA | 1 cut(s) | 160 |
| TspRI | CASTG | 1 cut(s) | 544 |
| VneI | GTGCAC | 1 cut(s) | 471 |
| VspI | ATTAAT | 3 cut(s) | 210, 323, 699 |
| XapI | RAATTY | 1 cut(s) | 148 |
| XceI | RCATGY | 1 cut(s) | 479 |
| XhoI | CTCGAG | 1 cut(s) | 182 |
| XspI | CTAG | 3 cut(s) | 303, 420, 609 |
| ZrmI | AGTACT | 1 cut(s) | 301 |