Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 78, 488 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1221 |
| AccI | GTMKAC | 2 cut(s) | 445, 676 |
| AccIII | TCCGGA | 1 cut(s) | 331 |
| AciI | CCGC | 2 cut(s) | 461, 668 |
| AclWI | GGATC | 4 cut(s) | 102, 601, 614, 797 |
| AcsI | RAATTY | 3 cut(s) | 72, 177, 271 |
| AcuI | CTGAAG | 1 cut(s) | 155 |
| AcyI | GRCGYC | 1 cut(s) | 79 |
| AfaI | GTAC | 4 cut(s) | 356, 601, 768, 790 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 101, 423, 763, 1221 |
| AgeI | ACCGGT | 1 cut(s) | 448 |
| AgsI | TTSAA | 2 cut(s) | 1069, 1118 |
| AhlI | ACTAGT | 1 cut(s) | 785 |
| AjiI | CACGTC | 1 cut(s) | 680 |
| AjnI | CCWGG | 1 cut(s) | 1220 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 753, 785 |
| AleI | CACNNNNGTG | 1 cut(s) | 494 |
| Alw21I | GWGCWC | 1 cut(s) | 1014 |
| AlwI | GGATC | 4 cut(s) | 102, 601, 614, 797 |
| Ama87I | CYCGRG | 1 cut(s) | 1245 |
| Aor13HI | TCCGGA | 1 cut(s) | 331 |
| AoxI | GGCC | 3 cut(s) | 393, 530, 1218 |
| ApeKI | GCWGC | 4 cut(s) | 381, 520, 878, 942 |
| ApoI | RAATTY | 3 cut(s) | 72, 177, 271 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 775, 807 |
| AsiGI | ACCGGT | 1 cut(s) | 448 |
| AspLEI | GCGC | 2 cut(s) | 81, 412 |
| AspS9I | GGNCC | 1 cut(s) | 530 |
| AsuC2I | CCSGG | 1 cut(s) | 849 |
| AsuHPI | GGTGA | 2 cut(s) | 944, 1280 |
| AvaI | CYCGRG | 1 cut(s) | 1245 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 916, 949 |
| BamHI | GGATCC | 1 cut(s) | 606 |
| BanI | GGYRCC | 2 cut(s) | 78, 488 |
| BanII | GRGCYC | 1 cut(s) | 1014 |
| BbsI | GAAGAC | 1 cut(s) | 743 |
| Bbv12I | GWGCWC | 1 cut(s) | 1014 |
| BbvI | GCAGC | 4 cut(s) | 393, 507, 865, 929 |
| BccI | CCATC | 9 cut(s) | 17, 421, 465, 479, 510, 692, 791, 1123, 1169 |
| BceAI | ACGGC | 1 cut(s) | 66 |
| BciT130I | CCWGG | 1 cut(s) | 1222 |
| BciVI | GTATCC | 2 cut(s) | 665, 917 |
| BcnI | CCSGG | 1 cut(s) | 849 |
| BcuI | ACTAGT | 1 cut(s) | 785 |
| BfaI | CTAG | 3 cut(s) | 648, 659, 786 |
| BfmI | CTRYAG | 1 cut(s) | 539 |
| BfoI | RGCGCY | 2 cut(s) | 82, 413 |
| BfuI | GTATCC | 2 cut(s) | 665, 917 |
| BisI | GCNGC | 4 cut(s) | 382, 521, 879, 943 |
| BlpI | GCTNAGC | 1 cut(s) | 187 |
| BlsI | GCNGC | 4 cut(s) | 383, 522, 880, 944 |
| BmcAI | AGTACT | 1 cut(s) | 790 |
| Bme1390I | CCNGG | 2 cut(s) | 849, 1222 |
| BmeT110I | CYCGRG | 1 cut(s) | 1245 |
| BmgBI | CACGTC | 1 cut(s) | 680 |
| BmgT120I | GGNCC | 1 cut(s) | 530 |
| BmiI | GGNNCC | 4 cut(s) | 80, 490, 608, 846 |
| BmrFI | CCNGG | 2 cut(s) | 849, 1222 |
| BmsI | GCATC | 2 cut(s) | 1105, 1264 |
| BpiI | GAAGAC | 1 cut(s) | 743 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 187 |
| BpuMI | CCSGG | 1 cut(s) | 849 |
| BsaBI | GATNNNNATC | 2 cut(s) | 801, 1254 |
| BsaHI | GRCGYC | 1 cut(s) | 79 |
| BsaJI | CCNNGG | 1 cut(s) | 1215 |
| BsaWI | WCCGGW | 3 cut(s) | 101, 331, 448 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 101, 423, 763, 1221 |
| Bse118I | RCCGGY | 1 cut(s) | 448 |
| Bse1I | ACTGG | 1 cut(s) | 1086 |
| Bse3DI | GCAATG | 1 cut(s) | 376 |
| Bse8I | GATNNNNATC | 2 cut(s) | 801, 1254 |
| BseAI | TCCGGA | 1 cut(s) | 331 |
| BseBI | CCWGG | 1 cut(s) | 1222 |
| BseDI | CCNNGG | 1 cut(s) | 1215 |
| BseGI | GGATG | 7 cut(s) | 98, 413, 490, 684, 802, 1180, 1255 |
| BseJI | GATNNNNATC | 2 cut(s) | 801, 1254 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 101, 423, 763, 1221 |
| BseMI | GCAATG | 1 cut(s) | 376 |
| BseMII | CTCAG | 4 cut(s) | 160, 201, 362, 662 |
| BseNI | ACTGG | 1 cut(s) | 1086 |
| BseRI | GAGGAG | 1 cut(s) | 1017 |
| BseXI | GCAGC | 4 cut(s) | 393, 507, 865, 929 |
| BsgI | GTGCAG | 1 cut(s) | 878 |
| Bsh1285I | CGRYCG | 1 cut(s) | 106 |
| BshFI | GGCC | 3 cut(s) | 395, 532, 1220 |
| BshNI | GGYRCC | 2 cut(s) | 78, 488 |
| BshTI | ACCGGT | 1 cut(s) | 448 |
| BsiEI | CGRYCG | 1 cut(s) | 106 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1014 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1245 |
| BsiSI | CCGG | 4 cut(s) | 102, 332, 449, 848 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 101, 423, 763, 1221 |
| BsmI | GAATGC | 1 cut(s) | 622 |
| BsnI | GGCC | 3 cut(s) | 395, 532, 1220 |
| BsoBI | CYCGRG | 1 cut(s) | 1245 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1014 |
| Bsp13I | TCCGGA | 1 cut(s) | 331 |
| Bsp1407I | TGTACA | 1 cut(s) | 354 |
| Bsp143I | GATC | 4 cut(s) | 107, 595, 606, 802 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 187 |
| Bsp19I | CCATGG | 1 cut(s) | 1215 |
| BspACI | CCGC | 2 cut(s) | 461, 668 |
| BspANI | GGCC | 3 cut(s) | 395, 532, 1220 |
| BspCNI | CTCAG | 4 cut(s) | 159, 200, 361, 663 |
| BspEI | TCCGGA | 1 cut(s) | 331 |
| BspHI | TCATGA | 1 cut(s) | 592 |
| BspLI | GGNNCC | 4 cut(s) | 80, 490, 608, 846 |
| BspPI | GGATC | 4 cut(s) | 102, 601, 614, 797 |
| BspT107I | GGYRCC | 2 cut(s) | 78, 488 |
| BsrDI | GCAATG | 1 cut(s) | 376 |
| BsrFI | RCCGGY | 1 cut(s) | 448 |
| BsrGI | TGTACA | 1 cut(s) | 354 |
| BsrI | ACTGG | 1 cut(s) | 1086 |
| BssAI | RCCGGY | 1 cut(s) | 448 |
| BssECI | CCNNGG | 1 cut(s) | 1215 |
| BssMI | GATC | 4 cut(s) | 107, 595, 606, 802 |
| BssNI | GRCGYC | 1 cut(s) | 79 |
| BssT1I | CCWWGG | 1 cut(s) | 1215 |
| Bst2UI | CCWGG | 1 cut(s) | 1222 |
| Bst4CI | ACNGT | 3 cut(s) | 619, 733, 1163 |
| Bst6I | CTCTTC | 1 cut(s) | 1224 |
| BstACI | GRCGYC | 1 cut(s) | 79 |
| BstAUI | TGTACA | 1 cut(s) | 354 |
| BstC8I | GCNNGC | 2 cut(s) | 300, 459 |
| BstDEI | CTNAG | 5 cut(s) | 146, 182, 187, 348, 671 |
| BstDSI | CCRYGG | 1 cut(s) | 1215 |
| BstF5I | GGATG | 7 cut(s) | 98, 413, 490, 684, 802, 1180, 1255 |
| BstH2I | RGCGCY | 2 cut(s) | 82, 413 |
| BstHHI | GCGC | 2 cut(s) | 81, 412 |
| BstKTI | GATC | 4 cut(s) | 110, 598, 609, 805 |
| BstMBI | GATC | 4 cut(s) | 107, 595, 606, 802 |
| BstMCI | CGRYCG | 1 cut(s) | 106 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 125, 299, 304, 529, 1190 |
| BstNI | CCWGG | 1 cut(s) | 1222 |
| BstSCI | CCNGG | 2 cut(s) | 847, 1220 |
| BstSFI | CTRYAG | 1 cut(s) | 539 |
| BstV1I | GCAGC | 4 cut(s) | 393, 507, 865, 929 |
| BstV2I | GAAGAC | 1 cut(s) | 743 |
| BstX2I | RGATCY | 2 cut(s) | 606, 802 |
| BstYI | RGATCY | 2 cut(s) | 606, 802 |
| BsuI | GTATCC | 2 cut(s) | 665, 917 |
| BsuRI | GGCC | 3 cut(s) | 395, 532, 1220 |
| BtgI | CCRYGG | 1 cut(s) | 1215 |
| BtrI | CACGTC | 1 cut(s) | 680 |
| BtsCI | GGATG | 7 cut(s) | 98, 413, 490, 684, 802, 1180, 1255 |
| BtsIMutI | CAGTG | 1 cut(s) | 738 |
| Cac8I | GCNNGC | 2 cut(s) | 300, 459 |
| CciI | TCATGA | 1 cut(s) | 592 |
| CfoI | GCGC | 2 cut(s) | 81, 412 |
| Cfr10I | RCCGGY | 1 cut(s) | 448 |
| Cfr13I | GGNCC | 1 cut(s) | 530 |
| CseI | GACGC | 1 cut(s) | 934 |
| Csp6I | GTAC | 4 cut(s) | 355, 600, 767, 789 |
| CspAI | ACCGGT | 1 cut(s) | 448 |
| CviAII | CATG | 8 cut(s) | 259, 295, 568, 593, 603, 689, 980, 1216 |
| CviQI | GTAC | 4 cut(s) | 355, 600, 767, 789 |
| DdeI | CTNAG | 5 cut(s) | 146, 182, 187, 348, 671 |
| DinI | GGCGCC | 1 cut(s) | 80 |
| DpnI | GATC | 4 cut(s) | 109, 597, 608, 804 |
| DpnII | GATC | 4 cut(s) | 107, 595, 606, 802 |
| Eam1104I | CTCTTC | 1 cut(s) | 1224 |
| EarI | CTCTTC | 1 cut(s) | 1224 |
| Ecl136II | GAGCTC | 1 cut(s) | 1012 |
| Eco130I | CCWWGG | 1 cut(s) | 1215 |
| Eco24I | GRGCYC | 1 cut(s) | 1014 |
| Eco53kI | GAGCTC | 1 cut(s) | 1012 |
| Eco57I | CTGAAG | 1 cut(s) | 155 |
| Eco88I | CYCGRG | 1 cut(s) | 1245 |
| EcoICRI | GAGCTC | 1 cut(s) | 1012 |
| EcoRII | CCWGG | 1 cut(s) | 1220 |
| EcoT14I | CCWWGG | 1 cut(s) | 1215 |
| EcoT22I | ATGCAT | 2 cut(s) | 869, 1098 |
| EcoT38I | GRGCYC | 1 cut(s) | 1014 |
| EgeI | GGCGCC | 1 cut(s) | 80 |
| EheI | GGCGCC | 1 cut(s) | 80 |
| ErhI | CCWWGG | 1 cut(s) | 1215 |
| FaeI | CATG | 8 cut(s) | 262, 298, 571, 596, 606, 692, 983, 1219 |
| FatI | CATG | 8 cut(s) | 258, 294, 567, 592, 602, 688, 979, 1215 |
| FauI | CCCGC | 1 cut(s) | 454 |
| FblI | GTMKAC | 2 cut(s) | 445, 676 |
| Fnu4HI | GCNGC | 4 cut(s) | 382, 521, 879, 943 |
| FokI | GGATG | 7 cut(s) | 85, 400, 497, 671, 809, 1187, 1262 |
| FriOI | GRGCYC | 1 cut(s) | 1014 |
| Fsp4HI | GCNGC | 4 cut(s) | 382, 521, 879, 943 |
| FspBI | CTAG | 3 cut(s) | 648, 659, 786 |
| GlaI | GCGC | 2 cut(s) | 80, 411 |
| GluI | GCNGC | 4 cut(s) | 382, 521, 879, 943 |
| HaeII | RGCGCY | 2 cut(s) | 82, 413 |
| HaeIII | GGCC | 3 cut(s) | 395, 532, 1220 |
| HapII | CCGG | 4 cut(s) | 102, 332, 449, 848 |
| HgaI | GACGC | 1 cut(s) | 934 |
| HhaI | GCGC | 2 cut(s) | 81, 412 |
| Hin1I | GRCGYC | 1 cut(s) | 79 |
| Hin1II | CATG | 8 cut(s) | 262, 298, 571, 596, 606, 692, 983, 1219 |
| Hin6I | GCGC | 2 cut(s) | 79, 410 |
| HinP1I | GCGC | 2 cut(s) | 79, 410 |
| HincII | GTYRAC | 1 cut(s) | 677 |
| HindII | GTYRAC | 1 cut(s) | 677 |
| HindIII | AAGCTT | 1 cut(s) | 155 |
| HinfI | GANTC | 7 cut(s) | 208, 335, 673, 706, 761, 1102, 1153 |
| HpaII | CCGG | 4 cut(s) | 102, 332, 449, 848 |
| HphI | GGTGA | 2 cut(s) | 944, 1280 |
| Hpy166II | GTNNAC | 3 cut(s) | 446, 499, 677 |
| Hpy188I | TCNGA | 3 cut(s) | 640, 796, 1101 |
| Hpy188III | TCNNGA | 5 cut(s) | 241, 332, 593, 710, 1247 |
| Hpy8I | GTNNAC | 3 cut(s) | 446, 499, 677 |
| Hpy99I | CGWCG | 1 cut(s) | 681 |
| HpyAV | CCTTC | 4 cut(s) | 130, 245, 621, 817 |
| HpyCH4III | ACNGT | 3 cut(s) | 619, 733, 1163 |
| HpyCH4IV | ACGT | 1 cut(s) | 679 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 125, 299, 304, 529, 1190 |
| HpyF3I | CTNAG | 5 cut(s) | 146, 182, 187, 348, 671 |
| HpySE526I | ACGT | 1 cut(s) | 679 |
| Hsp92I | GRCGYC | 1 cut(s) | 79 |
| Hsp92II | CATG | 8 cut(s) | 262, 298, 571, 596, 606, 692, 983, 1219 |
| HspAI | GCGC | 2 cut(s) | 79, 410 |
| KasI | GGCGCC | 1 cut(s) | 78 |
| Kpn2I | TCCGGA | 1 cut(s) | 331 |
| Kzo9I | GATC | 4 cut(s) | 107, 595, 606, 802 |
| LmnI | GCTCC | 2 cut(s) | 367, 1017 |
| Lsp1109I | GCAGC | 4 cut(s) | 393, 507, 865, 929 |
| LweI | GCATC | 2 cut(s) | 1105, 1264 |
| MaeI | CTAG | 3 cut(s) | 648, 659, 786 |
| MaeII | ACGT | 1 cut(s) | 679 |
| MaeIII | GTNAC | 1 cut(s) | 322 |
| MalI | GATC | 4 cut(s) | 109, 597, 608, 804 |
| MboI | GATC | 4 cut(s) | 107, 595, 606, 802 |
| MboII | GAAGA | 6 cut(s) | 748, 980, 1011, 1162, 1196, 1241 |
| MflI | RGATCY | 2 cut(s) | 606, 802 |
| MhlI | GDGCHC | 1 cut(s) | 1014 |
| MluCI | AATT | 7 cut(s) | 13, 72, 177, 271, 318, 477, 586 |
| Mly113I | GGCGCC | 1 cut(s) | 79 |
| MlyI | GAGTC | 2 cut(s) | 682, 715 |
| MmeI | TCCRAC | 4 cut(s) | 293, 683, 1063, 1206 |
| MnlI | CCTC | 9 cut(s) | 248, 385, 502, 713, 959, 1035, 1038, 1065, 1206 |
| Mph1103I | ATGCAT | 2 cut(s) | 869, 1098 |
| MroI | TCCGGA | 1 cut(s) | 331 |
| MseI | TTAA | 2 cut(s) | 267, 810 |
| MslI | CAYNNNNRTG | 1 cut(s) | 494 |
| MspA1I | CMGCKG | 2 cut(s) | 670, 942 |
| MspI | CCGG | 4 cut(s) | 102, 332, 449, 848 |
| MspR9I | CCNGG | 2 cut(s) | 849, 1222 |
| Mva1269I | GAATGC | 1 cut(s) | 622 |
| MvaI | CCWGG | 1 cut(s) | 1222 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 125, 299, 304, 529, 1190 |
| NarI | GGCGCC | 1 cut(s) | 79 |
| NciI | CCSGG | 1 cut(s) | 849 |
| NcoI | CCATGG | 1 cut(s) | 1215 |
| NdeII | GATC | 4 cut(s) | 107, 595, 606, 802 |
| NlaIII | CATG | 8 cut(s) | 262, 298, 571, 596, 606, 692, 983, 1219 |
| NlaIV | GGNNCC | 4 cut(s) | 80, 490, 608, 846 |
| NsiI | ATGCAT | 2 cut(s) | 869, 1098 |
| OliI | CACNNNNGTG | 1 cut(s) | 494 |
| PagI | TCATGA | 1 cut(s) | 592 |
| PctI | GAATGC | 1 cut(s) | 622 |
| PfeI | GAWTC | 5 cut(s) | 208, 335, 761, 1102, 1153 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1221 |
| PinAI | ACCGGT | 1 cut(s) | 448 |
| PkrI | GCNGC | 4 cut(s) | 383, 522, 880, 944 |
| PleI | GAGTC | 2 cut(s) | 681, 714 |
| PluTI | GGCGCC | 1 cut(s) | 82 |
| PpsI | GAGTC | 2 cut(s) | 681, 714 |
| Psp124BI | GAGCTC | 1 cut(s) | 1014 |
| Psp6I | CCWGG | 1 cut(s) | 1220 |
| PspGI | CCWGG | 1 cut(s) | 1220 |
| PspN4I | GGNNCC | 4 cut(s) | 80, 490, 608, 846 |
| PspPI | GGNCC | 1 cut(s) | 530 |
| PsuI | RGATCY | 2 cut(s) | 606, 802 |
| PvuII | CAGCTG | 1 cut(s) | 942 |
| RsaI | GTAC | 4 cut(s) | 356, 601, 768, 790 |
| RsaNI | GTAC | 4 cut(s) | 355, 600, 767, 789 |
| RseI | CAYNNNNRTG | 1 cut(s) | 494 |
| SacI | GAGCTC | 1 cut(s) | 1014 |
| SalI | GTCGAC | 1 cut(s) | 675 |
| SaqAI | TTAA | 2 cut(s) | 267, 810 |
| SatI | GCNGC | 4 cut(s) | 382, 521, 879, 943 |
| Sau3AI | GATC | 4 cut(s) | 107, 595, 606, 802 |
| Sau96I | GGNCC | 1 cut(s) | 530 |
| ScaI | AGTACT | 1 cut(s) | 790 |
| SchI | GAGTC | 2 cut(s) | 682, 715 |
| ScrFI | CCNGG | 2 cut(s) | 849, 1222 |
| SduI | GDGCHC | 1 cut(s) | 1014 |
| SfaNI | GCATC | 2 cut(s) | 1105, 1264 |
| SfcI | CTRYAG | 1 cut(s) | 539 |
| SfoI | GGCGCC | 1 cut(s) | 80 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 494 |
| SpeI | ACTAGT | 1 cut(s) | 785 |
| Sse9I | AATT | 7 cut(s) | 13, 72, 177, 271, 318, 477, 586 |
| SsiI | CCGC | 2 cut(s) | 461, 668 |
| SspDI | GGCGCC | 1 cut(s) | 78 |
| SspMI | CTAG | 3 cut(s) | 648, 659, 786 |
| SstI | GAGCTC | 1 cut(s) | 1014 |
| StyD4I | CCNGG | 2 cut(s) | 847, 1220 |
| StyI | CCWWGG | 1 cut(s) | 1215 |
| TaaI | ACNGT | 3 cut(s) | 619, 733, 1163 |
| TaiI | ACGT | 1 cut(s) | 682 |
| TaqI | TCGA | 4 cut(s) | 106, 614, 676, 1156 |
| TasI | AATT | 7 cut(s) | 13, 72, 177, 271, 318, 477, 586 |
| TatI | WGTACW | 2 cut(s) | 354, 788 |
| TfiI | GAWTC | 5 cut(s) | 208, 335, 761, 1102, 1153 |
| Tru1I | TTAA | 2 cut(s) | 267, 810 |
| Tru9I | TTAA | 2 cut(s) | 267, 810 |
| TscAI | CASTG | 1 cut(s) | 738 |
| TseI | GCWGC | 4 cut(s) | 381, 520, 878, 942 |
| TspDTI | ATGAA | 2 cut(s) | 200, 452 |
| TspGWI | ACGGA | 4 cut(s) | 60, 84, 524, 572 |
| TspRI | CASTG | 1 cut(s) | 738 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1221 |
| XapI | RAATTY | 3 cut(s) | 72, 177, 271 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 420, 1222 |
| XmiI | GTMKAC | 2 cut(s) | 445, 676 |
| XspI | CTAG | 3 cut(s) | 648, 659, 786 |
| ZrmI | AGTACT | 1 cut(s) | 790 |
| Zsp2I | ATGCAT | 2 cut(s) | 869, 1098 |