Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 98, 231 |
| AccI | GTMKAC | 1 cut(s) | 524 |
| AciI | CCGC | 1 cut(s) | 638 |
| AclWI | GGATC | 1 cut(s) | 511 |
| AcsI | RAATTY | 1 cut(s) | 932 |
| AcuI | CTGAAG | 2 cut(s) | 132, 563 |
| AfaI | GTAC | 6 cut(s) | 77, 140, 284, 316, 358, 586 |
| AfeI | AGCGCT | 1 cut(s) | 967 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 451, 526 |
| AgsI | TTSAA | 4 cut(s) | 17, 701, 740, 823 |
| AjnI | CCWGG | 2 cut(s) | 201, 905 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 212, 244 |
| Alw21I | GWGCWC | 2 cut(s) | 55, 124 |
| Alw26I | GTCTC | 2 cut(s) | 646, 753 |
| AlwI | GGATC | 1 cut(s) | 511 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 344, 347 |
| Aor51HI | AGCGCT | 1 cut(s) | 967 |
| AoxI | GGCC | 3 cut(s) | 42, 205, 806 |
| ApeKI | GCWGC | 5 cut(s) | 338, 341, 344, 565, 704 |
| ApoI | RAATTY | 1 cut(s) | 932 |
| AspLEI | GCGC | 1 cut(s) | 968 |
| AspS9I | GGNCC | 4 cut(s) | 42, 205, 806, 910 |
| AsuHPI | GGTGA | 1 cut(s) | 703 |
| AvaII | GGWCC | 1 cut(s) | 910 |
| AxyI | CCTNAGG | 1 cut(s) | 37 |
| BanII | GRGCYC | 2 cut(s) | 55, 124 |
| BbsI | GAAGAC | 1 cut(s) | 446 |
| Bbv12I | GWGCWC | 2 cut(s) | 55, 124 |
| BbvI | GCAGC | 5 cut(s) | 331, 350, 353, 577, 691 |
| BccI | CCATC | 4 cut(s) | 77, 470, 520, 686 |
| BciT130I | CCWGG | 2 cut(s) | 203, 907 |
| BciVI | GTATCC | 2 cut(s) | 254, 376 |
| BclI | TGATCA | 2 cut(s) | 535, 879 |
| BcoDI | GTCTC | 2 cut(s) | 646, 753 |
| BfmI | CTRYAG | 2 cut(s) | 224, 705 |
| BfoI | RGCGCY | 1 cut(s) | 969 |
| BfuAI | ACCTGC | 2 cut(s) | 98, 231 |
| BfuI | GTATCC | 2 cut(s) | 254, 376 |
| BisI | GCNGC | 5 cut(s) | 339, 342, 345, 566, 705 |
| BlpI | GCTNAGC | 1 cut(s) | 569 |
| BlsI | GCNGC | 5 cut(s) | 340, 343, 346, 567, 706 |
| Bme1390I | CCNGG | 2 cut(s) | 203, 907 |
| Bme18I | GGWCC | 1 cut(s) | 910 |
| BmgT120I | GGNCC | 4 cut(s) | 42, 205, 806, 910 |
| BmiI | GGNNCC | 3 cut(s) | 43, 807, 911 |
| BmrFI | CCNGG | 2 cut(s) | 203, 907 |
| BmrI | ACTGGG | 1 cut(s) | 821 |
| BmsI | GCATC | 4 cut(s) | 390, 398, 665, 766 |
| BmuI | ACTGGG | 1 cut(s) | 821 |
| BpiI | GAAGAC | 1 cut(s) | 446 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 20, 52 |
| BpmI | CTGGAG | 2 cut(s) | 369, 582 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 569 |
| BpuEI | CTTGAG | 1 cut(s) | 929 |
| Bsa29I | ATCGAT | 1 cut(s) | 515 |
| BsaI | GGTCTC | 2 cut(s) | 646, 753 |
| BsaJI | CCNNGG | 4 cut(s) | 202, 208, 309, 906 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 42, 72 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 451, 526 |
| Bse1I | ACTGG | 2 cut(s) | 520, 816 |
| Bse21I | CCTNAGG | 1 cut(s) | 37 |
| Bse3DI | GCAATG | 2 cut(s) | 736, 866 |
| BseBI | CCWGG | 2 cut(s) | 203, 907 |
| BseCI | ATCGAT | 1 cut(s) | 515 |
| BseDI | CCNNGG | 4 cut(s) | 202, 208, 309, 906 |
| BseGI | GGATG | 1 cut(s) | 405 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 451, 526 |
| BseMI | GCAATG | 2 cut(s) | 736, 866 |
| BseMII | CTCAG | 4 cut(s) | 51, 137, 560, 851 |
| BseNI | ACTGG | 2 cut(s) | 520, 816 |
| BseXI | GCAGC | 5 cut(s) | 331, 350, 353, 577, 691 |
| BshFI | GGCC | 3 cut(s) | 44, 207, 808 |
| BshVI | ATCGAT | 1 cut(s) | 515 |
| BsiHKAI | GWGCWC | 2 cut(s) | 55, 124 |
| BslFI | GGGAC | 1 cut(s) | 226 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 451, 526 |
| BsmAI | GTCTC | 2 cut(s) | 646, 753 |
| BsmFI | GGGAC | 1 cut(s) | 226 |
| BsnI | GGCC | 3 cut(s) | 44, 207, 808 |
| Bso31I | GGTCTC | 2 cut(s) | 646, 753 |
| Bsp1286I | GDGCHC | 2 cut(s) | 55, 124 |
| Bsp1407I | TGTACA | 1 cut(s) | 356 |
| Bsp143I | GATC | 5 cut(s) | 10, 516, 535, 879, 891 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 569 |
| Bsp19I | CCATGG | 1 cut(s) | 309 |
| BspACI | CCGC | 1 cut(s) | 638 |
| BspANI | GGCC | 3 cut(s) | 44, 207, 808 |
| BspCNI | CTCAG | 4 cut(s) | 50, 136, 561, 850 |
| BspDI | ATCGAT | 1 cut(s) | 515 |
| BspLI | GGNNCC | 3 cut(s) | 43, 807, 911 |
| BspMAI | CTGCAG | 2 cut(s) | 228, 709 |
| BspMI | ACCTGC | 2 cut(s) | 98, 231 |
| BspPI | GGATC | 1 cut(s) | 511 |
| BspTNI | GGTCTC | 2 cut(s) | 646, 753 |
| BsrDI | GCAATG | 2 cut(s) | 736, 866 |
| BsrGI | TGTACA | 1 cut(s) | 356 |
| BsrI | ACTGG | 2 cut(s) | 520, 816 |
| BssECI | CCNNGG | 4 cut(s) | 202, 208, 309, 906 |
| BssMI | GATC | 5 cut(s) | 10, 516, 535, 879, 891 |
| BssNAI | GTATAC | 1 cut(s) | 525 |
| BssT1I | CCWWGG | 2 cut(s) | 208, 309 |
| Bst1107I | GTATAC | 1 cut(s) | 525 |
| Bst2UI | CCWGG | 2 cut(s) | 203, 907 |
| Bst4CI | ACNGT | 6 cut(s) | 243, 266, 361, 529, 769, 853 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 344, 785 |
| BstAUI | TGTACA | 1 cut(s) | 356 |
| BstDEI | CTNAG | 5 cut(s) | 37, 123, 569, 837, 857 |
| BstDSI | CCRYGG | 1 cut(s) | 309 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 449 |
| BstF5I | GGATG | 1 cut(s) | 405 |
| BstH2I | RGCGCY | 1 cut(s) | 969 |
| BstHHI | GCGC | 1 cut(s) | 968 |
| BstKTI | GATC | 5 cut(s) | 13, 519, 538, 882, 894 |
| BstMAI | GTCTC | 2 cut(s) | 646, 753 |
| BstMBI | GATC | 5 cut(s) | 10, 516, 535, 879, 891 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 50, 344, 350, 611, 620, 635, 785 |
| BstNI | CCWGG | 2 cut(s) | 203, 907 |
| BstSCI | CCNGG | 2 cut(s) | 201, 905 |
| BstSFI | CTRYAG | 2 cut(s) | 224, 705 |
| BstV1I | GCAGC | 5 cut(s) | 331, 350, 353, 577, 691 |
| BstV2I | GAAGAC | 1 cut(s) | 446 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 209 |
| BstZ17I | GTATAC | 1 cut(s) | 525 |
| Bsu15I | ATCGAT | 1 cut(s) | 515 |
| Bsu36I | CCTNAGG | 1 cut(s) | 37 |
| BsuI | GTATCC | 2 cut(s) | 254, 376 |
| BsuRI | GGCC | 3 cut(s) | 44, 207, 808 |
| BsuTUI | ATCGAT | 1 cut(s) | 515 |
| BtgI | CCRYGG | 1 cut(s) | 309 |
| BtsCI | GGATG | 1 cut(s) | 405 |
| BtsIMutI | CAGTG | 1 cut(s) | 809 |
| BveI | ACCTGC | 2 cut(s) | 98, 231 |
| CaiI | CAGNNNCTG | 2 cut(s) | 344, 347 |
| CfoI | GCGC | 1 cut(s) | 968 |
| Cfr13I | GGNCC | 4 cut(s) | 42, 205, 806, 910 |
| ClaI | ATCGAT | 1 cut(s) | 515 |
| Csp6I | GTAC | 6 cut(s) | 76, 139, 283, 315, 357, 585 |
| CviAII | CATG | 1 cut(s) | 310 |
| CviQI | GTAC | 6 cut(s) | 76, 139, 283, 315, 357, 585 |
| DdeI | CTNAG | 5 cut(s) | 37, 123, 569, 837, 857 |
| DpnI | GATC | 5 cut(s) | 12, 518, 537, 881, 893 |
| DpnII | GATC | 5 cut(s) | 10, 516, 535, 879, 891 |
| DraI | TTTAAA | 1 cut(s) | 274 |
| Ecl136II | GAGCTC | 2 cut(s) | 53, 122 |
| Eco130I | CCWWGG | 2 cut(s) | 208, 309 |
| Eco24I | GRGCYC | 2 cut(s) | 55, 124 |
| Eco31I | GGTCTC | 2 cut(s) | 646, 753 |
| Eco47I | GGWCC | 1 cut(s) | 910 |
| Eco47III | AGCGCT | 1 cut(s) | 967 |
| Eco53kI | GAGCTC | 2 cut(s) | 53, 122 |
| Eco57I | CTGAAG | 2 cut(s) | 132, 563 |
| Eco81I | CCTNAGG | 1 cut(s) | 37 |
| EcoICRI | GAGCTC | 2 cut(s) | 53, 122 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 449 |
| EcoO109I | RGGNCCY | 2 cut(s) | 205, 910 |
| EcoRII | CCWGG | 2 cut(s) | 201, 905 |
| EcoT14I | CCWWGG | 2 cut(s) | 208, 309 |
| EcoT22I | ATGCAT | 1 cut(s) | 781 |
| EcoT38I | GRGCYC | 2 cut(s) | 55, 124 |
| ErhI | CCWWGG | 2 cut(s) | 208, 309 |
| FaeI | CATG | 1 cut(s) | 313 |
| FaiI | YATR | 8 cut(s) | 199, 258, 311, 365, 488, 525, 670, 786 |
| FaqI | GGGAC | 1 cut(s) | 226 |
| FatI | CATG | 1 cut(s) | 309 |
| FbaI | TGATCA | 2 cut(s) | 535, 879 |
| FblI | GTMKAC | 1 cut(s) | 524 |
| Fnu4HI | GCNGC | 5 cut(s) | 339, 342, 345, 566, 705 |
| FokI | GGATG | 1 cut(s) | 412 |
| FriOI | GRGCYC | 2 cut(s) | 55, 124 |
| Fsp4HI | GCNGC | 5 cut(s) | 339, 342, 345, 566, 705 |
| GlaI | GCGC | 1 cut(s) | 967 |
| GluI | GCNGC | 5 cut(s) | 339, 342, 345, 566, 705 |
| GsuI | CTGGAG | 2 cut(s) | 369, 582 |
| HaeII | RGCGCY | 1 cut(s) | 969 |
| HaeIII | GGCC | 3 cut(s) | 44, 207, 808 |
| HhaI | GCGC | 1 cut(s) | 968 |
| Hin1II | CATG | 1 cut(s) | 313 |
| Hin6I | GCGC | 1 cut(s) | 966 |
| HinP1I | GCGC | 1 cut(s) | 966 |
| HinfI | GANTC | 5 cut(s) | 17, 127, 432, 590, 697 |
| HphI | GGTGA | 1 cut(s) | 703 |
| Hpy166II | GTNNAC | 1 cut(s) | 525 |
| Hpy188I | TCNGA | 6 cut(s) | 119, 126, 154, 451, 775, 840 |
| Hpy188III | TCNNGA | 4 cut(s) | 14, 436, 599, 740 |
| Hpy8I | GTNNAC | 1 cut(s) | 525 |
| HpyAV | CCTTC | 2 cut(s) | 716, 792 |
| HpyCH4III | ACNGT | 6 cut(s) | 243, 266, 361, 529, 769, 853 |
| HpyCH4V | TGCA | 9 cut(s) | 26, 93, 226, 338, 403, 687, 707, 779, 923 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 50, 344, 350, 611, 620, 635, 785 |
| HpyF3I | CTNAG | 5 cut(s) | 37, 123, 569, 837, 857 |
| Hsp92II | CATG | 1 cut(s) | 313 |
| HspAI | GCGC | 1 cut(s) | 966 |
| Ksp22I | TGATCA | 2 cut(s) | 535, 879 |
| Kzo9I | GATC | 5 cut(s) | 10, 516, 535, 879, 891 |
| LmnI | GCTCC | 2 cut(s) | 50, 350 |
| Lsp1109I | GCAGC | 5 cut(s) | 331, 350, 353, 577, 691 |
| LweI | GCATC | 4 cut(s) | 390, 398, 665, 766 |
| MaeIII | GTNAC | 1 cut(s) | 367 |
| MalI | GATC | 5 cut(s) | 12, 518, 537, 881, 893 |
| MboI | GATC | 5 cut(s) | 10, 516, 535, 879, 891 |
| MboII | GAAGA | 5 cut(s) | 451, 725, 731, 811, 901 |
| MhlI | GDGCHC | 2 cut(s) | 55, 124 |
| MluCI | AATT | 2 cut(s) | 171, 932 |
| MlyI | GAGTC | 2 cut(s) | 426, 599 |
| MnlI | CCTC | 5 cut(s) | 22, 46, 445, 460, 796 |
| Mph1103I | ATGCAT | 1 cut(s) | 781 |
| MseI | TTAA | 2 cut(s) | 273, 959 |
| MspA1I | CMGCKG | 3 cut(s) | 344, 541, 568 |
| MspR9I | CCNGG | 2 cut(s) | 203, 907 |
| MvaI | CCWGG | 2 cut(s) | 203, 907 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 50, 344, 350, 611, 620, 635, 785 |
| NcoI | CCATGG | 1 cut(s) | 309 |
| NdeII | GATC | 5 cut(s) | 10, 516, 535, 879, 891 |
| NlaIII | CATG | 1 cut(s) | 313 |
| NlaIV | GGNNCC | 3 cut(s) | 43, 807, 911 |
| NmeAIII | GCCGAG | 1 cut(s) | 842 |
| NmuCI | GTSAC | 1 cut(s) | 367 |
| NsiI | ATGCAT | 1 cut(s) | 781 |
| PfeI | GAWTC | 3 cut(s) | 17, 127, 697 |
| PflFI | GACNNNGTC | 1 cut(s) | 445 |
| PkrI | GCNGC | 5 cut(s) | 340, 343, 346, 567, 706 |
| PleI | GAGTC | 2 cut(s) | 426, 598 |
| PpsI | GAGTC | 2 cut(s) | 426, 598 |
| PpuMI | RGGWCCY | 1 cut(s) | 910 |
| Psp124BI | GAGCTC | 2 cut(s) | 55, 124 |
| Psp5II | RGGWCCY | 1 cut(s) | 910 |
| Psp6I | CCWGG | 2 cut(s) | 201, 905 |
| PspGI | CCWGG | 2 cut(s) | 201, 905 |
| PspN4I | GGNNCC | 3 cut(s) | 43, 807, 911 |
| PspPI | GGNCC | 4 cut(s) | 42, 205, 806, 910 |
| PspPPI | RGGWCCY | 1 cut(s) | 910 |
| PstI | CTGCAG | 2 cut(s) | 228, 709 |
| PstNI | CAGNNNCTG | 2 cut(s) | 344, 347 |
| PsyI | GACNNNGTC | 1 cut(s) | 445 |
| PvuII | CAGCTG | 3 cut(s) | 344, 541, 568 |
| RsaI | GTAC | 6 cut(s) | 77, 140, 284, 316, 358, 586 |
| RsaNI | GTAC | 6 cut(s) | 76, 139, 283, 315, 357, 585 |
| SacI | GAGCTC | 2 cut(s) | 55, 124 |
| SaqAI | TTAA | 2 cut(s) | 273, 959 |
| SatI | GCNGC | 5 cut(s) | 339, 342, 345, 566, 705 |
| Sau3AI | GATC | 5 cut(s) | 10, 516, 535, 879, 891 |
| Sau96I | GGNCC | 4 cut(s) | 42, 205, 806, 910 |
| SchI | GAGTC | 2 cut(s) | 426, 599 |
| ScrFI | CCNGG | 2 cut(s) | 203, 907 |
| SduI | GDGCHC | 2 cut(s) | 55, 124 |
| SfaNI | GCATC | 4 cut(s) | 390, 398, 665, 766 |
| SfcI | CTRYAG | 2 cut(s) | 224, 705 |
| SinI | GGWCC | 1 cut(s) | 910 |
| SmlI | CTYRAG | 1 cut(s) | 944 |
| SmoI | CTYRAG | 1 cut(s) | 944 |
| Sse9I | AATT | 2 cut(s) | 171, 932 |
| SsiI | CCGC | 1 cut(s) | 638 |
| SstI | GAGCTC | 2 cut(s) | 55, 124 |
| StyD4I | CCNGG | 2 cut(s) | 201, 905 |
| StyI | CCWWGG | 2 cut(s) | 208, 309 |
| TaaI | ACNGT | 6 cut(s) | 243, 266, 361, 529, 769, 853 |
| TaqI | TCGA | 1 cut(s) | 515 |
| TasI | AATT | 2 cut(s) | 171, 932 |
| TatI | WGTACW | 3 cut(s) | 138, 282, 356 |
| TfiI | GAWTC | 3 cut(s) | 17, 127, 697 |
| Tru1I | TTAA | 2 cut(s) | 273, 959 |
| Tru9I | TTAA | 2 cut(s) | 273, 959 |
| TscAI | CASTG | 1 cut(s) | 816 |
| TseFI | GTSAC | 1 cut(s) | 367 |
| TseI | GCWGC | 5 cut(s) | 338, 341, 344, 565, 704 |
| Tsp45I | GTSAC | 1 cut(s) | 367 |
| TspDTI | ATGAA | 5 cut(s) | 183, 235, 726, 732, 747 |
| TspRI | CASTG | 1 cut(s) | 816 |
| Tth111I | GACNNNGTC | 1 cut(s) | 445 |
| VpaK11BI | GGWCC | 1 cut(s) | 910 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 449 |
| XapI | RAATTY | 1 cut(s) | 932 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 52 |
| XmiI | GTMKAC | 1 cut(s) | 524 |
| Zsp2I | ATGCAT | 1 cut(s) | 781 |