Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 281 - 399 | 2.9e-24 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 343, 851 |
| AclWI | GGATC | 1 cut(s) | 602 |
| AcsI | RAATTY | 1 cut(s) | 352 |
| AfaI | GTAC | 1 cut(s) | 198 |
| AfeI | AGCGCT | 1 cut(s) | 958 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 145, 822, 823, 824, 950 |
| AflIII | ACRYGT | 1 cut(s) | 199 |
| AgsI | TTSAA | 7 cut(s) | 35, 131, 218, 239, 462, 505, 859 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 231, 263 |
| AleI | CACNNNNGTG | 1 cut(s) | 276 |
| AluBI | AGCT | 8 cut(s) | 169, 192, 471, 524, 616, 980, 989, 1004 |
| AluI | AGCT | 8 cut(s) | 169, 192, 471, 524, 616, 980, 989, 1004 |
| Alw21I | GWGCWC | 2 cut(s) | 430, 1066 |
| Alw26I | GTCTC | 2 cut(s) | 102, 108 |
| AlwI | GGATC | 1 cut(s) | 602 |
| Ama87I | CYCGRG | 1 cut(s) | 897 |
| Aor51HI | AGCGCT | 1 cut(s) | 958 |
| AoxI | GGCC | 1 cut(s) | 558 |
| ApaI | GGGCCC | 1 cut(s) | 562 |
| ApoI | RAATTY | 1 cut(s) | 352 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 457 |
| AspA2I | CCTAGG | 1 cut(s) | 1075 |
| AspLEI | GCGC | 1 cut(s) | 959 |
| AspS9I | GGNCC | 3 cut(s) | 558, 559, 930 |
| AsuC2I | CCSGG | 1 cut(s) | 910 |
| AsuHPI | GGTGA | 3 cut(s) | 13, 71, 1091 |
| AsuNHI | GCTAGC | 1 cut(s) | 1000 |
| AvaI | CYCGRG | 1 cut(s) | 897 |
| AvaII | GGWCC | 1 cut(s) | 930 |
| AvrII | CCTAGG | 1 cut(s) | 1075 |
| BaeGI | GKGCMC | 1 cut(s) | 562 |
| BanI | GGYRCC | 2 cut(s) | 343, 851 |
| BanII | GRGCYC | 1 cut(s) | 562 |
| BbsI | GAAGAC | 3 cut(s) | 70, 141, 835 |
| Bbv12I | GWGCWC | 2 cut(s) | 430, 1066 |
| BccI | CCATC | 5 cut(s) | 148, 416, 576, 842, 866 |
| BceAI | ACGGC | 1 cut(s) | 799 |
| BclI | TGATCA | 1 cut(s) | 369 |
| BcnI | CCSGG | 1 cut(s) | 910 |
| BcoDI | GTCTC | 2 cut(s) | 102, 108 |
| BfaI | CTAG | 4 cut(s) | 621, 1001, 1076, 1199 |
| BfmI | CTRYAG | 1 cut(s) | 274 |
| BfoI | RGCGCY | 1 cut(s) | 960 |
| BlnI | CCTAGG | 1 cut(s) | 1075 |
| Bme1390I | CCNGG | 1 cut(s) | 910 |
| Bme18I | GGWCC | 1 cut(s) | 930 |
| BmeT110I | CYCGRG | 1 cut(s) | 897 |
| BmgT120I | GGNCC | 3 cut(s) | 558, 559, 930 |
| BmiI | GGNNCC | 4 cut(s) | 225, 345, 560, 853 |
| BmrFI | CCNGG | 1 cut(s) | 910 |
| BmsI | GCATC | 3 cut(s) | 172, 895, 1132 |
| BmtI | GCTAGC | 1 cut(s) | 1004 |
| BpiI | GAAGAC | 3 cut(s) | 70, 141, 835 |
| Bpu10I | CCTNAGC | 2 cut(s) | 165, 554 |
| BpuMI | CCSGG | 1 cut(s) | 910 |
| Bsa29I | ATCGAT | 1 cut(s) | 123 |
| BsaJI | CCNNGG | 4 cut(s) | 546, 821, 1012, 1075 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 687, 717, 802, 832 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 145, 822, 823, 824, 950 |
| Bse3DI | GCAATG | 1 cut(s) | 520 |
| BseCI | ATCGAT | 1 cut(s) | 123 |
| BseDI | CCNNGG | 4 cut(s) | 546, 821, 1012, 1075 |
| BseGI | GGATG | 3 cut(s) | 760, 853, 877 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 145, 822, 823, 824, 950 |
| BseMI | GCAATG | 1 cut(s) | 520 |
| BseMII | CTCAG | 1 cut(s) | 156 |
| BseSI | GKGCMC | 1 cut(s) | 562 |
| BseYI | CCCAGC | 2 cut(s) | 24, 989 |
| BsgI | GTGCAG | 1 cut(s) | 342 |
| BshFI | GGCC | 1 cut(s) | 560 |
| BshNI | GGYRCC | 2 cut(s) | 343, 851 |
| BshVI | ATCGAT | 1 cut(s) | 123 |
| BsiHKAI | GWGCWC | 2 cut(s) | 430, 1066 |
| BsiHKCI | CYCGRG | 1 cut(s) | 897 |
| BsiSI | CCGG | 1 cut(s) | 909 |
| BslFI | GGGAC | 2 cut(s) | 282, 341 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 145, 822, 823, 824, 950 |
| BsmAI | GTCTC | 2 cut(s) | 102, 108 |
| BsmFI | GGGAC | 2 cut(s) | 282, 341 |
| BsnI | GGCC | 1 cut(s) | 560 |
| BsoBI | CYCGRG | 1 cut(s) | 897 |
| Bsp120I | GGGCCC | 1 cut(s) | 558 |
| Bsp1286I | GDGCHC | 3 cut(s) | 430, 562, 1066 |
| Bsp1407I | TGTACA | 1 cut(s) | 196 |
| Bsp143I | GATC | 3 cut(s) | 369, 447, 594 |
| BspANI | GGCC | 1 cut(s) | 560 |
| BspCNI | CTCAG | 1 cut(s) | 157 |
| BspDI | ATCGAT | 1 cut(s) | 123 |
| BspLI | GGNNCC | 4 cut(s) | 225, 345, 560, 853 |
| BspOI | GCTAGC | 1 cut(s) | 1004 |
| BspPI | GGATC | 1 cut(s) | 602 |
| BspT107I | GGYRCC | 2 cut(s) | 343, 851 |
| BsrDI | GCAATG | 1 cut(s) | 520 |
| BsrGI | TGTACA | 1 cut(s) | 196 |
| BssECI | CCNNGG | 4 cut(s) | 546, 821, 1012, 1075 |
| BssMI | GATC | 3 cut(s) | 369, 447, 594 |
| BssT1I | CCWWGG | 3 cut(s) | 546, 1012, 1075 |
| Bst4CI | ACNGT | 3 cut(s) | 278, 343, 968 |
| Bst6I | CTCTTC | 1 cut(s) | 144 |
| BstAUI | TGTACA | 1 cut(s) | 196 |
| BstC8I | GCNNGC | 2 cut(s) | 714, 1002 |
| BstDEI | CTNAG | 2 cut(s) | 165, 554 |
| BstDSI | CCRYGG | 1 cut(s) | 821 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 143 |
| BstF5I | GGATG | 3 cut(s) | 760, 853, 877 |
| BstH2I | RGCGCY | 1 cut(s) | 960 |
| BstHHI | GCGC | 1 cut(s) | 959 |
| BstKTI | GATC | 3 cut(s) | 372, 450, 597 |
| BstMAI | GTCTC | 2 cut(s) | 102, 108 |
| BstMBI | GATC | 3 cut(s) | 369, 447, 594 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 956, 986, 1142 |
| BstNSI | RCATGY | 3 cut(s) | 203, 434, 716 |
| BstSCI | CCNGG | 1 cut(s) | 908 |
| BstSFI | CTRYAG | 1 cut(s) | 274 |
| BstSLI | GKGCMC | 1 cut(s) | 562 |
| BstV2I | GAAGAC | 3 cut(s) | 70, 141, 835 |
| BstX2I | RGATCY | 1 cut(s) | 594 |
| BstYI | RGATCY | 1 cut(s) | 594 |
| Bsu15I | ATCGAT | 1 cut(s) | 123 |
| BsuRI | GGCC | 1 cut(s) | 560 |
| BsuTUI | ATCGAT | 1 cut(s) | 123 |
| BtgI | CCRYGG | 1 cut(s) | 821 |
| BtsCI | GGATG | 3 cut(s) | 760, 853, 877 |
| BtsIMutI | CAGTG | 2 cut(s) | 283, 964 |
| Cac8I | GCNNGC | 2 cut(s) | 714, 1002 |
| CfoI | GCGC | 1 cut(s) | 959 |
| Cfr13I | GGNCC | 3 cut(s) | 558, 559, 930 |
| ClaI | ATCGAT | 1 cut(s) | 123 |
| Csp6I | GTAC | 1 cut(s) | 197 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1164, 1199 |
| CviAII | CATG | 7 cut(s) | 200, 265, 298, 431, 646, 713, 927 |
| CviQI | GTAC | 1 cut(s) | 197 |
| DdeI | CTNAG | 2 cut(s) | 165, 554 |
| DpnI | GATC | 3 cut(s) | 371, 449, 596 |
| DpnII | GATC | 3 cut(s) | 369, 447, 594 |
| DraI | TTTAAA | 1 cut(s) | 919 |
| Eam1104I | CTCTTC | 1 cut(s) | 144 |
| EarI | CTCTTC | 1 cut(s) | 144 |
| Eco130I | CCWWGG | 3 cut(s) | 546, 1012, 1075 |
| Eco24I | GRGCYC | 1 cut(s) | 562 |
| Eco47I | GGWCC | 1 cut(s) | 930 |
| Eco47III | AGCGCT | 1 cut(s) | 958 |
| Eco88I | CYCGRG | 1 cut(s) | 897 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 143 |
| EcoO109I | RGGNCCY | 1 cut(s) | 558 |
| EcoT14I | CCWWGG | 3 cut(s) | 546, 1012, 1075 |
| EcoT22I | ATGCAT | 1 cut(s) | 714 |
| EcoT38I | GRGCYC | 1 cut(s) | 562 |
| ErhI | CCWWGG | 3 cut(s) | 546, 1012, 1075 |
| FaeI | CATG | 7 cut(s) | 203, 268, 301, 434, 649, 716, 930 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 123, 155 |
| FaqI | GGGAC | 2 cut(s) | 282, 341 |
| FatI | CATG | 7 cut(s) | 199, 264, 297, 430, 645, 712, 926 |
| FauNDI | CATATG | 1 cut(s) | 382 |
| FbaI | TGATCA | 1 cut(s) | 369 |
| FokI | GGATG | 3 cut(s) | 747, 860, 884 |
| FriOI | GRGCYC | 1 cut(s) | 562 |
| FspBI | CTAG | 4 cut(s) | 621, 1001, 1076, 1199 |
| GlaI | GCGC | 1 cut(s) | 958 |
| GsaI | CCCAGC | 2 cut(s) | 28, 993 |
| HaeII | RGCGCY | 1 cut(s) | 960 |
| HaeIII | GGCC | 1 cut(s) | 560 |
| HapII | CCGG | 1 cut(s) | 909 |
| HhaI | GCGC | 1 cut(s) | 959 |
| Hin1II | CATG | 7 cut(s) | 203, 268, 301, 434, 649, 716, 930 |
| Hin6I | GCGC | 1 cut(s) | 957 |
| HinP1I | GCGC | 1 cut(s) | 957 |
| HincII | GTYRAC | 1 cut(s) | 729 |
| HindII | GTYRAC | 1 cut(s) | 729 |
| HindIII | AAGCTT | 1 cut(s) | 190 |
| HinfI | GANTC | 3 cut(s) | 696, 831, 1043 |
| HpaII | CCGG | 1 cut(s) | 909 |
| HphI | GGTGA | 3 cut(s) | 13, 71, 1091 |
| Hpy166II | GTNNAC | 2 cut(s) | 259, 729 |
| Hpy188I | TCNGA | 4 cut(s) | 177, 415, 452, 1104 |
| Hpy188III | TCNNGA | 5 cut(s) | 205, 445, 845, 859, 899 |
| Hpy8I | GTNNAC | 2 cut(s) | 259, 729 |
| HpyAV | CCTTC | 4 cut(s) | 109, 783, 865, 1015 |
| HpyCH4III | ACNGT | 3 cut(s) | 278, 343, 968 |
| HpyCH4V | TGCA | 7 cut(s) | 323, 380, 497, 513, 712, 769, 926 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 956, 986, 1142 |
| HpyF3I | CTNAG | 2 cut(s) | 165, 554 |
| Hsp92II | CATG | 7 cut(s) | 203, 268, 301, 434, 649, 716, 930 |
| HspAI | GCGC | 1 cut(s) | 957 |
| Ksp22I | TGATCA | 1 cut(s) | 369 |
| Kzo9I | GATC | 3 cut(s) | 369, 447, 594 |
| LmnI | GCTCC | 3 cut(s) | 425, 548, 621 |
| LweI | GCATC | 3 cut(s) | 172, 895, 1132 |
| MaeI | CTAG | 4 cut(s) | 621, 1001, 1076, 1199 |
| MaeIII | GTNAC | 3 cut(s) | 337, 517, 1157 |
| MalI | GATC | 3 cut(s) | 371, 449, 596 |
| MboI | GATC | 3 cut(s) | 369, 447, 594 |
| MfeI | CAATTG | 1 cut(s) | 626 |
| MflI | RGATCY | 1 cut(s) | 594 |
| MhlI | GDGCHC | 3 cut(s) | 430, 562, 1066 |
| MluCI | AATT | 4 cut(s) | 29, 352, 626, 1152 |
| MlyI | GAGTC | 2 cut(s) | 705, 825 |
| MmeI | TCCRAC | 2 cut(s) | 572, 1082 |
| MnlI | CCTC | 9 cut(s) | 272, 383, 666, 828, 872, 964, 1024, 1057, 1087 |
| Mph1103I | ATGCAT | 1 cut(s) | 714 |
| MroXI | GAANNNNTTC | 1 cut(s) | 457 |
| MseI | TTAA | 3 cut(s) | 171, 840, 918 |
| MslI | CAYNNNNRTG | 4 cut(s) | 45, 276, 365, 435 |
| MspI | CCGG | 1 cut(s) | 909 |
| MspR9I | CCNGG | 1 cut(s) | 910 |
| MunI | CAATTG | 1 cut(s) | 626 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 956, 986, 1142 |
| NciI | CCSGG | 1 cut(s) | 910 |
| NdeI | CATATG | 1 cut(s) | 382 |
| NdeII | GATC | 3 cut(s) | 369, 447, 594 |
| NheI | GCTAGC | 1 cut(s) | 1000 |
| NlaIII | CATG | 7 cut(s) | 203, 268, 301, 434, 649, 716, 930 |
| NlaIV | GGNNCC | 4 cut(s) | 225, 345, 560, 853 |
| NmuCI | GTSAC | 3 cut(s) | 337, 517, 1157 |
| NsiI | ATGCAT | 1 cut(s) | 714 |
| NspI | RCATGY | 3 cut(s) | 203, 434, 716 |
| OliI | CACNNNNGTG | 1 cut(s) | 276 |
| PaeI | GCATGC | 1 cut(s) | 716 |
| PaeR7I | CTCGAG | 1 cut(s) | 897 |
| PciI | ACATGT | 1 cut(s) | 199 |
| PdmI | GAANNNNTTC | 1 cut(s) | 457 |
| PfeI | GAWTC | 1 cut(s) | 1043 |
| PleI | GAGTC | 2 cut(s) | 704, 825 |
| PpsI | GAGTC | 2 cut(s) | 704, 825 |
| PscI | ACATGT | 1 cut(s) | 199 |
| PspFI | CCCAGC | 2 cut(s) | 24, 989 |
| PspN4I | GGNNCC | 4 cut(s) | 225, 345, 560, 853 |
| PspOMI | GGGCCC | 1 cut(s) | 558 |
| PspPI | GGNCC | 3 cut(s) | 558, 559, 930 |
| PsuI | RGATCY | 1 cut(s) | 594 |
| RsaI | GTAC | 1 cut(s) | 198 |
| RsaNI | GTAC | 1 cut(s) | 197 |
| RseI | CAYNNNNRTG | 4 cut(s) | 45, 276, 365, 435 |
| SaqAI | TTAA | 3 cut(s) | 171, 840, 918 |
| Sau3AI | GATC | 3 cut(s) | 369, 447, 594 |
| Sau96I | GGNCC | 3 cut(s) | 558, 559, 930 |
| SchI | GAGTC | 2 cut(s) | 705, 825 |
| ScrFI | CCNGG | 1 cut(s) | 910 |
| SduI | GDGCHC | 3 cut(s) | 430, 562, 1066 |
| SfaNI | GCATC | 3 cut(s) | 172, 895, 1132 |
| SfcI | CTRYAG | 1 cut(s) | 274 |
| Sfr274I | CTCGAG | 1 cut(s) | 897 |
| SinI | GGWCC | 1 cut(s) | 930 |
| SlaI | CTCGAG | 1 cut(s) | 897 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 45, 276, 365, 435 |
| SmlI | CTYRAG | 1 cut(s) | 897 |
| SmoI | CTYRAG | 1 cut(s) | 897 |
| SphI | GCATGC | 1 cut(s) | 716 |
| Sse9I | AATT | 4 cut(s) | 29, 352, 626, 1152 |
| SspMI | CTAG | 4 cut(s) | 621, 1001, 1076, 1199 |
| StyD4I | CCNGG | 1 cut(s) | 908 |
| StyI | CCWWGG | 3 cut(s) | 546, 1012, 1075 |
| TaaI | ACNGT | 3 cut(s) | 278, 343, 968 |
| TaqI | TCGA | 3 cut(s) | 123, 405, 898 |
| TasI | AATT | 4 cut(s) | 29, 352, 626, 1152 |
| TatI | WGTACW | 1 cut(s) | 196 |
| TfiI | GAWTC | 1 cut(s) | 1043 |
| Tru1I | TTAA | 3 cut(s) | 171, 840, 918 |
| Tru9I | TTAA | 3 cut(s) | 171, 840, 918 |
| TscAI | CASTG | 2 cut(s) | 283, 971 |
| TseFI | GTSAC | 3 cut(s) | 337, 517, 1157 |
| Tsp45I | GTSAC | 3 cut(s) | 337, 517, 1157 |
| TspDTI | ATGAA | 5 cut(s) | 17, 63, 286, 453, 634 |
| TspRI | CASTG | 2 cut(s) | 283, 971 |
| VpaK11BI | GGWCC | 1 cut(s) | 930 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 143 |
| XapI | RAATTY | 1 cut(s) | 352 |
| XceI | RCATGY | 3 cut(s) | 203, 434, 716 |
| XhoI | CTCGAG | 1 cut(s) | 897 |
| XmaJI | CCTAGG | 1 cut(s) | 1075 |
| XmnI | GAANNNNTTC | 1 cut(s) | 457 |
| XspI | CTAG | 4 cut(s) | 621, 1001, 1076, 1199 |
| Zsp2I | ATGCAT | 1 cut(s) | 714 |