Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 2 - 74 | 9.7e-08 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AfiI | CCNNNNNNNGG | 1 cut(s) | 257 |
| AflIII | ACRYGT | 1 cut(s) | 302 |
| AgsI | TTSAA | 5 cut(s) | 62, 264, 280, 300, 345 |
| AluBI | AGCT | 2 cut(s) | 91, 212 |
| AluI | AGCT | 2 cut(s) | 91, 212 |
| Alw21I | GWGCWC | 1 cut(s) | 189 |
| Alw26I | GTCTC | 1 cut(s) | 124 |
| Alw44I | GTGCAC | 1 cut(s) | 185 |
| AoxI | GGCC | 2 cut(s) | 3, 159 |
| ApaLI | GTGCAC | 1 cut(s) | 185 |
| ApeKI | GCWGC | 1 cut(s) | 212 |
| AspS9I | GGNCC | 1 cut(s) | 236 |
| AvaII | GGWCC | 1 cut(s) | 236 |
| BaeGI | GKGCMC | 1 cut(s) | 189 |
| Bbv12I | GWGCWC | 1 cut(s) | 189 |
| BbvI | GCAGC | 1 cut(s) | 199 |
| BclI | TGATCA | 1 cut(s) | 334 |
| BcoDI | GTCTC | 1 cut(s) | 124 |
| BfaI | CTAG | 1 cut(s) | 192 |
| BisI | GCNGC | 1 cut(s) | 213 |
| BlsI | GCNGC | 1 cut(s) | 214 |
| Bme18I | GGWCC | 1 cut(s) | 236 |
| BmgT120I | GGNCC | 1 cut(s) | 236 |
| BsaJI | CCNNGG | 1 cut(s) | 177 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 257 |
| BseDI | CCNNGG | 1 cut(s) | 177 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 257 |
| BseMII | CTCAG | 1 cut(s) | 268 |
| BseRI | GAGGAG | 2 cut(s) | 357, 360 |
| BseSI | GKGCMC | 1 cut(s) | 189 |
| BseXI | GCAGC | 1 cut(s) | 199 |
| BsgI | GTGCAG | 1 cut(s) | 198 |
| BshFI | GGCC | 2 cut(s) | 5, 161 |
| BsiHKAI | GWGCWC | 1 cut(s) | 189 |
| BslFI | GGGAC | 1 cut(s) | 237 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 257 |
| BsmAI | GTCTC | 1 cut(s) | 124 |
| BsmFI | GGGAC | 1 cut(s) | 237 |
| BsnI | GGCC | 2 cut(s) | 5, 161 |
| Bsp1286I | GDGCHC | 1 cut(s) | 189 |
| Bsp143I | GATC | 1 cut(s) | 334 |
| BspANI | GGCC | 2 cut(s) | 5, 161 |
| BspCNI | CTCAG | 1 cut(s) | 267 |
| BspQI | GCTCTTC | 1 cut(s) | 48 |
| BssECI | CCNNGG | 1 cut(s) | 177 |
| BssMI | GATC | 1 cut(s) | 334 |
| BssT1I | CCWWGG | 1 cut(s) | 177 |
| Bst4CI | ACNGT | 1 cut(s) | 272 |
| Bst6I | CTCTTC | 3 cut(s) | 48, 190, 380 |
| BstC8I | GCNNGC | 1 cut(s) | 189 |
| BstDEI | CTNAG | 1 cut(s) | 254 |
| BstKTI | GATC | 1 cut(s) | 337 |
| BstMAI | GTCTC | 1 cut(s) | 124 |
| BstMBI | GATC | 1 cut(s) | 334 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 209 |
| BstSLI | GKGCMC | 1 cut(s) | 189 |
| BstV1I | GCAGC | 1 cut(s) | 199 |
| BsuRI | GGCC | 2 cut(s) | 5, 161 |
| BtsI | GCAGTG | 1 cut(s) | 24 |
| BtsIMutI | CAGTG | 2 cut(s) | 24, 262 |
| Cac8I | GCNNGC | 1 cut(s) | 189 |
| Cfr13I | GGNCC | 1 cut(s) | 236 |
| CviAII | CATG | 1 cut(s) | 360 |
| CviJI | RGCY | 7 cut(s) | 5, 53, 78, 91, 161, 212, 286 |
| CviKI_1 | RGCY | 7 cut(s) | 5, 53, 78, 91, 161, 212, 286 |
| DdeI | CTNAG | 1 cut(s) | 254 |
| DpnI | GATC | 1 cut(s) | 336 |
| DpnII | GATC | 1 cut(s) | 334 |
| DraI | TTTAAA | 1 cut(s) | 309 |
| Eam1104I | CTCTTC | 3 cut(s) | 48, 190, 380 |
| EarI | CTCTTC | 3 cut(s) | 48, 190, 380 |
| Eco130I | CCWWGG | 1 cut(s) | 177 |
| Eco47I | GGWCC | 1 cut(s) | 236 |
| EcoT14I | CCWWGG | 1 cut(s) | 177 |
| ErhI | CCWWGG | 1 cut(s) | 177 |
| FaeI | CATG | 1 cut(s) | 363 |
| FaiI | YATR | 7 cut(s) | 27, 138, 146, 219, 221, 328, 361 |
| FaqI | GGGAC | 1 cut(s) | 237 |
| FatI | CATG | 1 cut(s) | 359 |
| FauNDI | CATATG | 1 cut(s) | 219 |
| FbaI | TGATCA | 1 cut(s) | 334 |
| Fnu4HI | GCNGC | 1 cut(s) | 213 |
| Fsp4HI | GCNGC | 1 cut(s) | 213 |
| FspBI | CTAG | 1 cut(s) | 192 |
| GluI | GCNGC | 1 cut(s) | 213 |
| HaeIII | GGCC | 2 cut(s) | 5, 161 |
| Hin1II | CATG | 1 cut(s) | 363 |
| HincII | GTYRAC | 1 cut(s) | 33 |
| HindII | GTYRAC | 1 cut(s) | 33 |
| Hpy166II | GTNNAC | 2 cut(s) | 33, 187 |
| Hpy188I | TCNGA | 1 cut(s) | 99 |
| Hpy188III | TCNNGA | 1 cut(s) | 332 |
| Hpy8I | GTNNAC | 2 cut(s) | 33, 187 |
| HpyAV | CCTTC | 2 cut(s) | 257, 306 |
| HpyCH4III | ACNGT | 1 cut(s) | 272 |
| HpyCH4IV | ACGT | 1 cut(s) | 304 |
| HpyCH4V | TGCA | 2 cut(s) | 187, 215 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 209 |
| HpyF3I | CTNAG | 1 cut(s) | 254 |
| HpySE526I | ACGT | 1 cut(s) | 304 |
| Hsp92II | CATG | 1 cut(s) | 363 |
| Ksp22I | TGATCA | 1 cut(s) | 334 |
| Kzo9I | GATC | 1 cut(s) | 334 |
| LguI | GCTCTTC | 1 cut(s) | 48 |
| LpnPI | CCDG | 3 cut(s) | 19, 35, 303 |
| Lsp1109I | GCAGC | 1 cut(s) | 199 |
| MaeI | CTAG | 1 cut(s) | 192 |
| MaeII | ACGT | 1 cut(s) | 304 |
| MalI | GATC | 1 cut(s) | 336 |
| MboI | GATC | 1 cut(s) | 334 |
| MboII | GAAGA | 4 cut(s) | 35, 152, 207, 367 |
| MhlI | GDGCHC | 1 cut(s) | 189 |
| MluCI | AATT | 1 cut(s) | 172 |
| MnlI | CCTC | 6 cut(s) | 127, 249, 261, 375, 378, 381 |
| MseI | TTAA | 2 cut(s) | 80, 308 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 209 |
| NdeI | CATATG | 1 cut(s) | 219 |
| NdeII | GATC | 1 cut(s) | 334 |
| NlaIII | CATG | 1 cut(s) | 363 |
| PciSI | GCTCTTC | 1 cut(s) | 48 |
| PflFI | GACNNNGTC | 1 cut(s) | 228 |
| PkrI | GCNGC | 1 cut(s) | 214 |
| PspPI | GGNCC | 1 cut(s) | 236 |
| PsyI | GACNNNGTC | 1 cut(s) | 228 |
| SapI | GCTCTTC | 1 cut(s) | 48 |
| SaqAI | TTAA | 2 cut(s) | 80, 308 |
| SatI | GCNGC | 1 cut(s) | 213 |
| Sau3AI | GATC | 1 cut(s) | 334 |
| Sau96I | GGNCC | 1 cut(s) | 236 |
| SduI | GDGCHC | 1 cut(s) | 189 |
| SetI | ASST | 7 cut(s) | 93, 119, 183, 214, 249, 298, 307 |
| SinI | GGWCC | 1 cut(s) | 236 |
| Sse9I | AATT | 1 cut(s) | 172 |
| SspMI | CTAG | 1 cut(s) | 192 |
| StyI | CCWWGG | 1 cut(s) | 177 |
| TaaI | ACNGT | 1 cut(s) | 272 |
| TaiI | ACGT | 1 cut(s) | 307 |
| TasI | AATT | 1 cut(s) | 172 |
| Tru1I | TTAA | 2 cut(s) | 80, 308 |
| Tru9I | TTAA | 2 cut(s) | 80, 308 |
| TscAI | CASTG | 2 cut(s) | 24, 262 |
| TseI | GCWGC | 1 cut(s) | 212 |
| TspDTI | ATGAA | 2 cut(s) | 35, 153 |
| TspRI | CASTG | 2 cut(s) | 24, 262 |
| Tth111I | GACNNNGTC | 1 cut(s) | 228 |
| VneI | GTGCAC | 1 cut(s) | 185 |
| VpaK11BI | GGWCC | 1 cut(s) | 236 |
| XspI | CTAG | 1 cut(s) | 192 |