ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 79 - 202 | 3.8e-27 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 509 |
| AccB1I | GGYRCC | 1 cut(s) | 766 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 218 |
| AccII | CGCG | 1 cut(s) | 387 |
| AciI | CCGC | 1 cut(s) | 385 |
| AcoI | YGGCCR | 2 cut(s) | 117, 585 |
| AcsI | RAATTY | 1 cut(s) | 629 |
| AcyI | GRCGYC | 1 cut(s) | 647 |
| AdeI | CACNNNGTG | 2 cut(s) | 170, 218 |
| AfaI | GTAC | 5 cut(s) | 133, 137, 351, 527, 737 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 218, 471, 472 |
| AgsI | TTSAA | 1 cut(s) | 551 |
| AluBI | AGCT | 6 cut(s) | 157, 249, 257, 323, 404, 774 |
| AluI | AGCT | 6 cut(s) | 157, 249, 257, 323, 404, 774 |
| Alw26I | GTCTC | 2 cut(s) | 51, 638 |
| AoxI | GGCC | 2 cut(s) | 117, 585 |
| ApeKI | GCWGC | 2 cut(s) | 13, 323 |
| ApoI | RAATTY | 1 cut(s) | 629 |
| AseI | ATTAAT | 1 cut(s) | 750 |
| AspLEI | GCGC | 1 cut(s) | 389 |
| AsuC2I | CCSGG | 1 cut(s) | 299 |
| AsuHPI | GGTGA | 1 cut(s) | 32 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 517, 550 |
| BalI | TGGCCA | 2 cut(s) | 119, 587 |
| BanI | GGYRCC | 1 cut(s) | 766 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 178, 210 |
| BbvCI | CCTCAGC | 1 cut(s) | 369 |
| BbvI | GCAGC | 1 cut(s) | 310 |
| BccI | CCATC | 2 cut(s) | 168, 236 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 548, 582 |
| BclI | TGATCA | 1 cut(s) | 304 |
| BcnI | CCSGG | 1 cut(s) | 299 |
| BcoDI | GTCTC | 2 cut(s) | 51, 638 |
| BfaI | CTAG | 6 cut(s) | 333, 531, 609, 696, 771, 775 |
| BisI | GCNGC | 2 cut(s) | 14, 324 |
| BlsI | GCNGC | 2 cut(s) | 15, 325 |
| Bme1390I | CCNGG | 1 cut(s) | 299 |
| BmiI | GGNNCC | 1 cut(s) | 768 |
| BmrFI | CCNGG | 1 cut(s) | 299 |
| BmsI | GCATC | 2 cut(s) | 34, 86 |
| Bpu10I | CCTNAGC | 1 cut(s) | 369 |
| BpuEI | CTTGAG | 1 cut(s) | 50 |
| BpuMI | CCSGG | 1 cut(s) | 299 |
| BsaAI | YACGTR | 1 cut(s) | 135 |
| BsaHI | GRCGYC | 1 cut(s) | 647 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 279, 303, 309, 333, 473, 503 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 218, 471, 472 |
| Bse118I | RCCGGY | 1 cut(s) | 389 |
| Bse1I | ACTGG | 1 cut(s) | 402 |
| BseGI | GGATG | 5 cut(s) | 101, 132, 160, 307, 427 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 218, 471, 472 |
| BseMII | CTCAG | 1 cut(s) | 360 |
| BseNI | ACTGG | 1 cut(s) | 402 |
| BseRI | GAGGAG | 2 cut(s) | 491, 494 |
| BseXI | GCAGC | 1 cut(s) | 310 |
| BseYI | CCCAGC | 1 cut(s) | 470 |
| Bsh1236I | CGCG | 1 cut(s) | 387 |
| BshFI | GGCC | 2 cut(s) | 119, 587 |
| BshNI | GGYRCC | 1 cut(s) | 766 |
| BsiSI | CCGG | 2 cut(s) | 298, 390 |
| BslFI | GGGAC | 2 cut(s) | 677, 700 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 218, 471, 472 |
| BsmAI | GTCTC | 2 cut(s) | 51, 638 |
| BsmBI | CGTCTC | 1 cut(s) | 638 |
| BsmFI | GGGAC | 2 cut(s) | 677, 700 |
| BsnI | GGCC | 2 cut(s) | 119, 587 |
| Bsp1407I | TGTACA | 1 cut(s) | 349 |
| Bsp143I | GATC | 1 cut(s) | 304 |
| BspACI | CCGC | 1 cut(s) | 385 |
| BspANI | GGCC | 2 cut(s) | 119, 587 |
| BspCNI | CTCAG | 1 cut(s) | 361 |
| BspFNI | CGCG | 1 cut(s) | 387 |
| BspLI | GGNNCC | 1 cut(s) | 768 |
| BspT107I | GGYRCC | 1 cut(s) | 766 |
| BsrFI | RCCGGY | 1 cut(s) | 389 |
| BsrGI | TGTACA | 1 cut(s) | 349 |
| BsrI | ACTGG | 1 cut(s) | 402 |
| BssAI | RCCGGY | 1 cut(s) | 389 |
| BssMI | GATC | 1 cut(s) | 304 |
| BssNI | GRCGYC | 1 cut(s) | 647 |
| Bst4CI | ACNGT | 1 cut(s) | 354 |
| Bst6I | CTCTTC | 1 cut(s) | 636 |
| BstACI | GRCGYC | 1 cut(s) | 647 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 605 |
| BstAUI | TGTACA | 1 cut(s) | 349 |
| BstBAI | YACGTR | 1 cut(s) | 135 |
| BstC8I | GCNNGC | 2 cut(s) | 366, 391 |
| BstDEI | CTNAG | 2 cut(s) | 174, 369 |
| BstF5I | GGATG | 5 cut(s) | 101, 132, 160, 307, 427 |
| BstFNI | CGCG | 1 cut(s) | 387 |
| BstHHI | GCGC | 1 cut(s) | 389 |
| BstKTI | GATC | 1 cut(s) | 307 |
| BstMAI | GTCTC | 2 cut(s) | 51, 638 |
| BstMBI | GATC | 1 cut(s) | 304 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 22, 329, 365, 605 |
| BstNSI | RCATGY | 3 cut(s) | 194, 368, 563 |
| BstSCI | CCNGG | 1 cut(s) | 297 |
| BstSNI | TACGTA | 1 cut(s) | 135 |
| BstUI | CGCG | 1 cut(s) | 387 |
| BstV1I | GCAGC | 1 cut(s) | 310 |
| BsuRI | GGCC | 2 cut(s) | 119, 587 |
| BtsCI | GGATG | 5 cut(s) | 101, 132, 160, 307, 427 |
| Cac8I | GCNNGC | 2 cut(s) | 366, 391 |
| CfoI | GCGC | 1 cut(s) | 389 |
| Cfr10I | RCCGGY | 1 cut(s) | 389 |
| CseI | GACGC | 2 cut(s) | 655, 674 |
| Csp6I | GTAC | 5 cut(s) | 132, 136, 350, 526, 736 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 96, 131 |
| CviAII | CATG | 5 cut(s) | 17, 191, 308, 365, 560 |
| CviQI | GTAC | 5 cut(s) | 132, 136, 350, 526, 736 |
| DdeI | CTNAG | 2 cut(s) | 174, 369 |
| DpnI | GATC | 1 cut(s) | 306 |
| DpnII | GATC | 1 cut(s) | 304 |
| DraIII | CACNNNGTG | 2 cut(s) | 170, 218 |
| EaeI | YGGCCR | 2 cut(s) | 117, 585 |
| Eam1104I | CTCTTC | 1 cut(s) | 636 |
| EarI | CTCTTC | 1 cut(s) | 636 |
| Eco105I | TACGTA | 1 cut(s) | 135 |
| Esp3I | CGTCTC | 1 cut(s) | 638 |
| FaeI | CATG | 5 cut(s) | 20, 194, 311, 368, 563 |
| FaqI | GGGAC | 2 cut(s) | 677, 700 |
| FatI | CATG | 5 cut(s) | 16, 190, 307, 364, 559 |
| FbaI | TGATCA | 1 cut(s) | 304 |
| Fnu4HI | GCNGC | 2 cut(s) | 14, 324 |
| FokI | GGATG | 5 cut(s) | 108, 139, 147, 314, 434 |
| Fsp4HI | GCNGC | 2 cut(s) | 14, 324 |
| FspBI | CTAG | 6 cut(s) | 333, 531, 609, 696, 771, 775 |
| GlaI | GCGC | 1 cut(s) | 388 |
| GluI | GCNGC | 2 cut(s) | 14, 324 |
| GsaI | CCCAGC | 1 cut(s) | 474 |
| HaeIII | GGCC | 2 cut(s) | 119, 587 |
| HapII | CCGG | 2 cut(s) | 298, 390 |
| HgaI | GACGC | 2 cut(s) | 655, 674 |
| HhaI | GCGC | 1 cut(s) | 389 |
| Hin1I | GRCGYC | 1 cut(s) | 647 |
| Hin1II | CATG | 5 cut(s) | 20, 194, 311, 368, 563 |
| Hin6I | GCGC | 1 cut(s) | 387 |
| HinP1I | GCGC | 1 cut(s) | 387 |
| HincII | GTYRAC | 1 cut(s) | 235 |
| HindII | GTYRAC | 1 cut(s) | 235 |
| HindIII | AAGCTT | 1 cut(s) | 247 |
| HinfI | GANTC | 2 cut(s) | 377, 437 |
| HpaI | GTTAAC | 1 cut(s) | 235 |
| HpaII | CCGG | 2 cut(s) | 298, 390 |
| HphI | GGTGA | 1 cut(s) | 32 |
| Hpy166II | GTNNAC | 4 cut(s) | 132, 212, 221, 235 |
| Hpy188I | TCNGA | 2 cut(s) | 442, 493 |
| Hpy188III | TCNNGA | 3 cut(s) | 29, 569, 662 |
| Hpy8I | GTNNAC | 4 cut(s) | 132, 212, 221, 235 |
| HpyAV | CCTTC | 1 cut(s) | 180 |
| HpyCH4III | ACNGT | 1 cut(s) | 354 |
| HpyCH4IV | ACGT | 2 cut(s) | 134, 166 |
| HpyCH4V | TGCA | 2 cut(s) | 16, 364 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 22, 329, 365, 605 |
| HpyF3I | CTNAG | 2 cut(s) | 174, 369 |
| HpySE526I | ACGT | 2 cut(s) | 134, 166 |
| Hsp92I | GRCGYC | 1 cut(s) | 647 |
| Hsp92II | CATG | 5 cut(s) | 20, 194, 311, 368, 563 |
| HspAI | GCGC | 1 cut(s) | 387 |
| KroI | GCCGGC | 1 cut(s) | 389 |
| KroNI | GCCGGC | 1 cut(s) | 391 |
| Ksp22I | TGATCA | 1 cut(s) | 304 |
| KspAI | GTTAAC | 1 cut(s) | 235 |
| Kzo9I | GATC | 1 cut(s) | 304 |
| LmnI | GCTCC | 1 cut(s) | 162 |
| LpnPI | CCDG | 7 cut(s) | 243, 311, 383, 403, 456, 663, 690 |
| Lsp1109I | GCAGC | 1 cut(s) | 310 |
| LweI | GCATC | 2 cut(s) | 34, 86 |
| MaeI | CTAG | 6 cut(s) | 333, 531, 609, 696, 771, 775 |
| MaeII | ACGT | 2 cut(s) | 134, 166 |
| MaeIII | GTNAC | 2 cut(s) | 193, 378 |
| MalI | GATC | 1 cut(s) | 306 |
| MboI | GATC | 1 cut(s) | 304 |
| MboII | GAAGA | 3 cut(s) | 190, 584, 653 |
| MlsI | TGGCCA | 2 cut(s) | 119, 587 |
| MluCI | AATT | 1 cut(s) | 629 |
| MluNI | TGGCCA | 2 cut(s) | 119, 587 |
| MlyI | GAGTC | 2 cut(s) | 386, 446 |
| MmeI | TCCRAC | 1 cut(s) | 593 |
| MnlI | CCTC | 8 cut(s) | 348, 364, 424, 469, 472, 475, 670, 757 |
| Mox20I | TGGCCA | 2 cut(s) | 119, 587 |
| MroNI | GCCGGC | 1 cut(s) | 389 |
| MscI | TGGCCA | 2 cut(s) | 119, 587 |
| MseI | TTAA | 4 cut(s) | 228, 234, 540, 750 |
| MslI | CAYNNNNRTG | 1 cut(s) | 107 |
| Msp20I | TGGCCA | 2 cut(s) | 119, 587 |
| MspI | CCGG | 2 cut(s) | 298, 390 |
| MspR9I | CCNGG | 1 cut(s) | 299 |
| MvnI | CGCG | 1 cut(s) | 387 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 22, 329, 365, 605 |
| NaeI | GCCGGC | 1 cut(s) | 391 |
| NciI | CCSGG | 1 cut(s) | 299 |
| NdeII | GATC | 1 cut(s) | 304 |
| NgoMIV | GCCGGC | 1 cut(s) | 389 |
| NlaIII | CATG | 5 cut(s) | 20, 194, 311, 368, 563 |
| NlaIV | GGNNCC | 1 cut(s) | 768 |
| NmuCI | GTSAC | 1 cut(s) | 378 |
| NspI | RCATGY | 3 cut(s) | 194, 368, 563 |
| PaeI | GCATGC | 1 cut(s) | 368 |
| PdiI | GCCGGC | 1 cut(s) | 391 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 218 |
| PfoI | TCCNGGA | 1 cut(s) | 297 |
| PkrI | GCNGC | 2 cut(s) | 15, 325 |
| PleI | GAGTC | 2 cut(s) | 385, 445 |
| PpsI | GAGTC | 2 cut(s) | 385, 445 |
| Ppu21I | YACGTR | 1 cut(s) | 135 |
| PshBI | ATTAAT | 1 cut(s) | 750 |
| PsiI | TTATAA | 1 cut(s) | 509 |
| PspFI | CCCAGC | 1 cut(s) | 470 |
| PspN4I | GGNNCC | 1 cut(s) | 768 |
| RsaI | GTAC | 5 cut(s) | 133, 137, 351, 527, 737 |
| RsaNI | GTAC | 5 cut(s) | 132, 136, 350, 526, 736 |
| RseI | CAYNNNNRTG | 1 cut(s) | 107 |
| SaqAI | TTAA | 4 cut(s) | 228, 234, 540, 750 |
| SatI | GCNGC | 2 cut(s) | 14, 324 |
| Sau3AI | GATC | 1 cut(s) | 304 |
| SchI | GAGTC | 2 cut(s) | 386, 446 |
| ScrFI | CCNGG | 1 cut(s) | 299 |
| SfaNI | GCATC | 2 cut(s) | 34, 86 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 107 |
| SmlI | CTYRAG | 1 cut(s) | 29 |
| SmoI | CTYRAG | 1 cut(s) | 29 |
| SnaBI | TACGTA | 1 cut(s) | 135 |
| SphI | GCATGC | 1 cut(s) | 368 |
| Sse9I | AATT | 1 cut(s) | 629 |
| SsiI | CCGC | 1 cut(s) | 385 |
| SspMI | CTAG | 6 cut(s) | 333, 531, 609, 696, 771, 775 |
| StyD4I | CCNGG | 1 cut(s) | 297 |
| TaaI | ACNGT | 1 cut(s) | 354 |
| TaiI | ACGT | 2 cut(s) | 137, 169 |
| TasI | AATT | 1 cut(s) | 629 |
| TatI | WGTACW | 2 cut(s) | 349, 735 |
| Tru1I | TTAA | 4 cut(s) | 228, 234, 540, 750 |
| Tru9I | TTAA | 4 cut(s) | 228, 234, 540, 750 |
| TseFI | GTSAC | 1 cut(s) | 378 |
| TseI | GCWGC | 2 cut(s) | 13, 323 |
| Tsp45I | GTSAC | 1 cut(s) | 378 |
| TspDTI | ATGAA | 5 cut(s) | 81, 91, 125, 642, 773 |
| TspGWI | ACGGA | 1 cut(s) | 517 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 218 |
| VspI | ATTAAT | 1 cut(s) | 750 |
| XapI | RAATTY | 1 cut(s) | 629 |
| XceI | RCATGY | 3 cut(s) | 194, 368, 563 |
| XspI | CTAG | 6 cut(s) | 333, 531, 609, 696, 771, 775 |