Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 26 |
| AatII | GACGTC | 1 cut(s) | 1094 |
| Acc16I | TGCGCA | 1 cut(s) | 599 |
| AccIII | TCCGGA | 1 cut(s) | 712 |
| AciI | CCGC | 1 cut(s) | 146 |
| AclWI | GGATC | 8 cut(s) | 16, 76, 89, 191, 199, 204, 212, 498 |
| AcoI | YGGCCR | 1 cut(s) | 940 |
| AcsI | RAATTY | 1 cut(s) | 513 |
| AcyI | GRCGYC | 1 cut(s) | 1091 |
| AfaI | GTAC | 2 cut(s) | 122, 754 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 244, 841, 945, 991 |
| AgeI | ACCGGT | 1 cut(s) | 1072 |
| AgsI | TTSAA | 3 cut(s) | 92, 874, 1064 |
| AhlI | ACTAGT | 1 cut(s) | 479 |
| AjnI | CCWGG | 5 cut(s) | 4, 200, 280, 389, 989 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 202, 234 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 550, 582 |
| AluBI | AGCT | 5 cut(s) | 58, 443, 454, 587, 973 |
| AluI | AGCT | 5 cut(s) | 58, 443, 454, 587, 973 |
| Alw21I | GWGCWC | 2 cut(s) | 60, 456 |
| AlwI | GGATC | 8 cut(s) | 16, 76, 89, 191, 199, 204, 212, 498 |
| Aor13HI | TCCGGA | 1 cut(s) | 712 |
| AoxI | GGCC | 6 cut(s) | 185, 774, 843, 940, 966, 1028 |
| ApeKI | GCWGC | 4 cut(s) | 131, 587, 730, 977 |
| ApoI | RAATTY | 1 cut(s) | 513 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 668, 700 |
| AseI | ATTAAT | 2 cut(s) | 309, 660 |
| AsiGI | ACCGGT | 1 cut(s) | 1072 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 878 |
| AspLEI | GCGC | 1 cut(s) | 600 |
| AspS9I | GGNCC | 4 cut(s) | 251, 948, 966, 1070 |
| AsuC2I | CCSGG | 1 cut(s) | 534 |
| AsuHPI | GGTGA | 1 cut(s) | 553 |
| AvaII | GGWCC | 3 cut(s) | 251, 948, 1070 |
| BamHI | GGATCC | 3 cut(s) | 81, 196, 204 |
| BanII | GRGCYC | 4 cut(s) | 60, 76, 456, 1083 |
| Bbv12I | GWGCWC | 2 cut(s) | 60, 456 |
| BbvI | GCAGC | 4 cut(s) | 118, 574, 717, 989 |
| BccI | CCATC | 3 cut(s) | 242, 617, 901 |
| BceAI | ACGGC | 1 cut(s) | 200 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 44, 78 |
| BciT130I | CCWGG | 5 cut(s) | 6, 202, 282, 391, 991 |
| BclI | TGATCA | 1 cut(s) | 643 |
| BcnI | CCSGG | 1 cut(s) | 534 |
| BcuI | ACTAGT | 1 cut(s) | 479 |
| BfaI | CTAG | 1 cut(s) | 480 |
| BfmI | CTRYAG | 1 cut(s) | 731 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 974 |
| BisI | GCNGC | 4 cut(s) | 132, 588, 731, 978 |
| BlsI | GCNGC | 4 cut(s) | 133, 589, 732, 979 |
| Bme1390I | CCNGG | 6 cut(s) | 6, 202, 282, 391, 534, 991 |
| Bme18I | GGWCC | 3 cut(s) | 251, 948, 1070 |
| BmgT120I | GGNCC | 4 cut(s) | 251, 948, 966, 1070 |
| BmiI | GGNNCC | 5 cut(s) | 83, 198, 206, 950, 1080 |
| BmrFI | CCNGG | 6 cut(s) | 6, 202, 282, 391, 534, 991 |
| BmsI | GCATC | 2 cut(s) | 821, 1016 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 479, 511 |
| BpuMI | CCSGG | 1 cut(s) | 534 |
| BsaHI | GRCGYC | 1 cut(s) | 1091 |
| BsaJI | CCNNGG | 5 cut(s) | 77, 188, 200, 990, 1031 |
| BsaWI | WCCGGW | 3 cut(s) | 253, 712, 1072 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 244, 841, 945, 991 |
| Bse118I | RCCGGY | 1 cut(s) | 1072 |
| Bse1I | ACTGG | 2 cut(s) | 682, 950 |
| Bse3DI | GCAATG | 1 cut(s) | 155 |
| BseAI | TCCGGA | 1 cut(s) | 712 |
| BseBI | CCWGG | 5 cut(s) | 6, 202, 282, 391, 991 |
| BseDI | CCNNGG | 5 cut(s) | 77, 188, 200, 990, 1031 |
| BseGI | GGATG | 7 cut(s) | 234, 253, 376, 628, 632, 836, 885 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 244, 841, 945, 991 |
| BseMI | GCAATG | 1 cut(s) | 155 |
| BseMII | CTCAG | 1 cut(s) | 953 |
| BseNI | ACTGG | 2 cut(s) | 682, 950 |
| BseRI | GAGGAG | 1 cut(s) | 464 |
| BseXI | GCAGC | 4 cut(s) | 118, 574, 717, 989 |
| BshFI | GGCC | 6 cut(s) | 187, 776, 845, 942, 968, 1030 |
| BshTI | ACCGGT | 1 cut(s) | 1072 |
| BsiHKAI | GWGCWC | 2 cut(s) | 60, 456 |
| BsiSI | CCGG | 6 cut(s) | 254, 533, 713, 835, 939, 1073 |
| BslFI | GGGAC | 2 cut(s) | 25, 689 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 244, 841, 945, 991 |
| BsmFI | GGGAC | 2 cut(s) | 25, 689 |
| BsnI | GGCC | 6 cut(s) | 187, 776, 845, 942, 968, 1030 |
| Bsp1286I | GDGCHC | 4 cut(s) | 60, 76, 456, 1083 |
| Bsp13I | TCCGGA | 1 cut(s) | 712 |
| Bsp143I | GATC | 7 cut(s) | 8, 81, 196, 204, 490, 643, 924 |
| BspACI | CCGC | 1 cut(s) | 146 |
| BspANI | GGCC | 6 cut(s) | 187, 776, 845, 942, 968, 1030 |
| BspCNI | CTCAG | 1 cut(s) | 954 |
| BspEI | TCCGGA | 1 cut(s) | 712 |
| BspHI | TCATGA | 1 cut(s) | 646 |
| BspLI | GGNNCC | 5 cut(s) | 83, 198, 206, 950, 1080 |
| BspMAI | CTGCAG | 1 cut(s) | 735 |
| BspPI | GGATC | 8 cut(s) | 16, 76, 89, 191, 199, 204, 212, 498 |
| BsrDI | GCAATG | 1 cut(s) | 155 |
| BsrFI | RCCGGY | 1 cut(s) | 1072 |
| BsrI | ACTGG | 2 cut(s) | 682, 950 |
| BssAI | RCCGGY | 1 cut(s) | 1072 |
| BssECI | CCNNGG | 5 cut(s) | 77, 188, 200, 990, 1031 |
| BssMI | GATC | 7 cut(s) | 8, 81, 196, 204, 490, 643, 924 |
| BssNI | GRCGYC | 1 cut(s) | 1091 |
| BssT1I | CCWWGG | 2 cut(s) | 188, 1031 |
| Bst2UI | CCWGG | 5 cut(s) | 6, 202, 282, 391, 991 |
| Bst4CI | ACNGT | 1 cut(s) | 383 |
| Bst6I | CTCTTC | 1 cut(s) | 502 |
| BstACI | GRCGYC | 1 cut(s) | 1091 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 727 |
| BstC8I | GCNNGC | 2 cut(s) | 975, 982 |
| BstDEI | CTNAG | 3 cut(s) | 36, 359, 962 |
| BstF5I | GGATG | 7 cut(s) | 234, 253, 376, 628, 632, 836, 885 |
| BstHHI | GCGC | 1 cut(s) | 600 |
| BstKTI | GATC | 7 cut(s) | 11, 84, 199, 207, 493, 646, 927 |
| BstMBI | GATC | 7 cut(s) | 8, 81, 196, 204, 490, 643, 924 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 71, 184, 727, 974, 986 |
| BstNI | CCWGG | 5 cut(s) | 6, 202, 282, 391, 991 |
| BstSCI | CCNGG | 6 cut(s) | 4, 200, 280, 389, 532, 989 |
| BstSFI | CTRYAG | 1 cut(s) | 731 |
| BstV1I | GCAGC | 4 cut(s) | 118, 574, 717, 989 |
| BstX2I | RGATCY | 4 cut(s) | 81, 196, 204, 490 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 464 |
| BstYI | RGATCY | 4 cut(s) | 81, 196, 204, 490 |
| BsuRI | GGCC | 6 cut(s) | 187, 776, 845, 942, 968, 1030 |
| BtsCI | GGATG | 7 cut(s) | 234, 253, 376, 628, 632, 836, 885 |
| BtsI | GCAGTG | 1 cut(s) | 60 |
| BtsIMutI | CAGTG | 2 cut(s) | 60, 943 |
| Cac8I | GCNNGC | 2 cut(s) | 975, 982 |
| CciI | TCATGA | 1 cut(s) | 646 |
| CfoI | GCGC | 1 cut(s) | 600 |
| Cfr10I | RCCGGY | 1 cut(s) | 1072 |
| Cfr13I | GGNCC | 4 cut(s) | 251, 948, 966, 1070 |
| Csp6I | GTAC | 2 cut(s) | 121, 753 |
| CspAI | ACCGGT | 1 cut(s) | 1072 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 144, 179 |
| CviAII | CATG | 4 cut(s) | 12, 242, 647, 722 |
| CviQI | GTAC | 2 cut(s) | 121, 753 |
| DdeI | CTNAG | 3 cut(s) | 36, 359, 962 |
| DpnI | GATC | 7 cut(s) | 10, 83, 198, 206, 492, 645, 926 |
| DpnII | GATC | 7 cut(s) | 8, 81, 196, 204, 490, 643, 924 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 26 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 26 |
| EaeI | YGGCCR | 1 cut(s) | 940 |
| Eam1104I | CTCTTC | 1 cut(s) | 502 |
| EarI | CTCTTC | 1 cut(s) | 502 |
| Ecl136II | GAGCTC | 2 cut(s) | 58, 454 |
| Eco130I | CCWWGG | 2 cut(s) | 188, 1031 |
| Eco24I | GRGCYC | 4 cut(s) | 60, 76, 456, 1083 |
| Eco32I | GATATC | 1 cut(s) | 913 |
| Eco47I | GGWCC | 3 cut(s) | 251, 948, 1070 |
| Eco53kI | GAGCTC | 2 cut(s) | 58, 454 |
| EcoICRI | GAGCTC | 2 cut(s) | 58, 454 |
| EcoRII | CCWGG | 5 cut(s) | 4, 200, 280, 389, 989 |
| EcoRV | GATATC | 1 cut(s) | 913 |
| EcoT14I | CCWWGG | 2 cut(s) | 188, 1031 |
| EcoT38I | GRGCYC | 4 cut(s) | 60, 76, 456, 1083 |
| ErhI | CCWWGG | 2 cut(s) | 188, 1031 |
| FaeI | CATG | 4 cut(s) | 15, 245, 650, 725 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 202, 234 |
| FaqI | GGGAC | 2 cut(s) | 25, 689 |
| FatI | CATG | 4 cut(s) | 11, 241, 646, 721 |
| FbaI | TGATCA | 1 cut(s) | 643 |
| Fnu4HI | GCNGC | 4 cut(s) | 132, 588, 731, 978 |
| FokI | GGATG | 7 cut(s) | 221, 260, 383, 635, 639, 843, 872 |
| FriOI | GRGCYC | 4 cut(s) | 60, 76, 456, 1083 |
| Fsp4HI | GCNGC | 4 cut(s) | 132, 588, 731, 978 |
| FspBI | CTAG | 1 cut(s) | 480 |
| FspI | TGCGCA | 1 cut(s) | 599 |
| GlaI | GCGC | 1 cut(s) | 599 |
| GluI | GCNGC | 4 cut(s) | 132, 588, 731, 978 |
| HaeIII | GGCC | 6 cut(s) | 187, 776, 845, 942, 968, 1030 |
| HapII | CCGG | 6 cut(s) | 254, 533, 713, 835, 939, 1073 |
| HhaI | GCGC | 1 cut(s) | 600 |
| Hin1I | GRCGYC | 1 cut(s) | 1091 |
| Hin1II | CATG | 4 cut(s) | 15, 245, 650, 725 |
| Hin6I | GCGC | 1 cut(s) | 598 |
| HinP1I | GCGC | 1 cut(s) | 598 |
| HinfI | GANTC | 3 cut(s) | 106, 295, 653 |
| HpaII | CCGG | 6 cut(s) | 254, 533, 713, 835, 939, 1073 |
| HphI | GGTGA | 1 cut(s) | 553 |
| Hpy188I | TCNGA | 6 cut(s) | 81, 239, 268, 366, 487, 1059 |
| Hpy188III | TCNNGA | 6 cut(s) | 377, 505, 620, 647, 692, 713 |
| HpyAV | CCTTC | 2 cut(s) | 225, 743 |
| HpyCH4III | ACNGT | 1 cut(s) | 383 |
| HpyCH4IV | ACGT | 5 cut(s) | 27, 755, 954, 1091, 1100 |
| HpyCH4V | TGCA | 4 cut(s) | 15, 721, 733, 866 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 71, 184, 727, 974, 986 |
| HpyF3I | CTNAG | 3 cut(s) | 36, 359, 962 |
| HpySE526I | ACGT | 5 cut(s) | 27, 755, 954, 1091, 1100 |
| Hsp92I | GRCGYC | 1 cut(s) | 1091 |
| Hsp92II | CATG | 4 cut(s) | 15, 245, 650, 725 |
| HspAI | GCGC | 1 cut(s) | 598 |
| Kpn2I | TCCGGA | 1 cut(s) | 712 |
| Ksp22I | TGATCA | 1 cut(s) | 643 |
| Kzo9I | GATC | 7 cut(s) | 8, 81, 196, 204, 490, 643, 924 |
| LmnI | GCTCC | 3 cut(s) | 451, 459, 1078 |
| Lsp1109I | GCAGC | 4 cut(s) | 118, 574, 717, 989 |
| LweI | GCATC | 2 cut(s) | 821, 1016 |
| MaeI | CTAG | 1 cut(s) | 480 |
| MaeII | ACGT | 5 cut(s) | 27, 755, 954, 1091, 1100 |
| MaeIII | GTNAC | 1 cut(s) | 1087 |
| MalI | GATC | 7 cut(s) | 10, 83, 198, 206, 492, 645, 926 |
| MboI | GATC | 7 cut(s) | 8, 81, 196, 204, 490, 643, 924 |
| MboII | GAAGA | 4 cut(s) | 210, 489, 871, 907 |
| MfeI | CAATTG | 1 cut(s) | 869 |
| MflI | RGATCY | 4 cut(s) | 81, 196, 204, 490 |
| MhlI | GDGCHC | 4 cut(s) | 60, 76, 456, 1083 |
| MluCI | AATT | 6 cut(s) | 86, 112, 269, 513, 869, 1065 |
| MmeI | TCCRAC | 2 cut(s) | 262, 808 |
| MroI | TCCGGA | 1 cut(s) | 712 |
| MroXI | GAANNNNTTC | 1 cut(s) | 878 |
| MseI | TTAA | 2 cut(s) | 309, 660 |
| MslI | CAYNNNNRTG | 1 cut(s) | 246 |
| MspA1I | CMGCKG | 1 cut(s) | 587 |
| MspI | CCGG | 6 cut(s) | 254, 533, 713, 835, 939, 1073 |
| MspR9I | CCNGG | 6 cut(s) | 6, 202, 282, 391, 534, 991 |
| MunI | CAATTG | 1 cut(s) | 869 |
| MvaI | CCWGG | 5 cut(s) | 6, 202, 282, 391, 991 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 71, 184, 727, 974, 986 |
| NciI | CCSGG | 1 cut(s) | 534 |
| NdeII | GATC | 7 cut(s) | 8, 81, 196, 204, 490, 643, 924 |
| NlaIII | CATG | 4 cut(s) | 15, 245, 650, 725 |
| NlaIV | GGNNCC | 5 cut(s) | 83, 198, 206, 950, 1080 |
| NmuCI | GTSAC | 1 cut(s) | 1087 |
| NsbI | TGCGCA | 1 cut(s) | 599 |
| PagI | TCATGA | 1 cut(s) | 646 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 24, 1097 |
| PdmI | GAANNNNTTC | 1 cut(s) | 878 |
| PfeI | GAWTC | 3 cut(s) | 106, 295, 653 |
| PinAI | ACCGGT | 1 cut(s) | 1072 |
| PkrI | GCNGC | 4 cut(s) | 133, 589, 732, 979 |
| PshBI | ATTAAT | 2 cut(s) | 309, 660 |
| Psp124BI | GAGCTC | 2 cut(s) | 60, 456 |
| Psp6I | CCWGG | 5 cut(s) | 4, 200, 280, 389, 989 |
| PspGI | CCWGG | 5 cut(s) | 4, 200, 280, 389, 989 |
| PspN4I | GGNNCC | 5 cut(s) | 83, 198, 206, 950, 1080 |
| PspPI | GGNCC | 4 cut(s) | 251, 948, 966, 1070 |
| PstI | CTGCAG | 1 cut(s) | 735 |
| PsuI | RGATCY | 4 cut(s) | 81, 196, 204, 490 |
| PvuII | CAGCTG | 1 cut(s) | 587 |
| RsaI | GTAC | 2 cut(s) | 122, 754 |
| RsaNI | GTAC | 2 cut(s) | 121, 753 |
| RseI | CAYNNNNRTG | 1 cut(s) | 246 |
| SacI | GAGCTC | 2 cut(s) | 60, 456 |
| SaqAI | TTAA | 2 cut(s) | 309, 660 |
| SatI | GCNGC | 4 cut(s) | 132, 588, 731, 978 |
| Sau3AI | GATC | 7 cut(s) | 8, 81, 196, 204, 490, 643, 924 |
| Sau96I | GGNCC | 4 cut(s) | 251, 948, 966, 1070 |
| ScrFI | CCNGG | 6 cut(s) | 6, 202, 282, 391, 534, 991 |
| SduI | GDGCHC | 4 cut(s) | 60, 76, 456, 1083 |
| SfaNI | GCATC | 2 cut(s) | 821, 1016 |
| SfcI | CTRYAG | 1 cut(s) | 731 |
| SinI | GGWCC | 3 cut(s) | 251, 948, 1070 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 246 |
| SpeI | ACTAGT | 1 cut(s) | 479 |
| Sse9I | AATT | 6 cut(s) | 86, 112, 269, 513, 869, 1065 |
| SsiI | CCGC | 1 cut(s) | 146 |
| SspI | AATATT | 1 cut(s) | 317 |
| SspMI | CTAG | 1 cut(s) | 480 |
| SstI | GAGCTC | 2 cut(s) | 60, 456 |
| StyD4I | CCNGG | 6 cut(s) | 4, 200, 280, 389, 532, 989 |
| StyI | CCWWGG | 2 cut(s) | 188, 1031 |
| TaaI | ACNGT | 1 cut(s) | 383 |
| TaiI | ACGT | 5 cut(s) | 30, 758, 957, 1094, 1103 |
| TaqI | TCGA | 3 cut(s) | 70, 958, 1104 |
| TasI | AATT | 6 cut(s) | 86, 112, 269, 513, 869, 1065 |
| TfiI | GAWTC | 3 cut(s) | 106, 295, 653 |
| Tru1I | TTAA | 2 cut(s) | 309, 660 |
| Tru9I | TTAA | 2 cut(s) | 309, 660 |
| TscAI | CASTG | 2 cut(s) | 67, 950 |
| TseFI | GTSAC | 1 cut(s) | 1087 |
| TseI | GCWGC | 4 cut(s) | 131, 587, 730, 977 |
| Tsp45I | GTSAC | 1 cut(s) | 1087 |
| TspDTI | ATGAA | 3 cut(s) | 539, 666, 762 |
| TspGWI | ACGGA | 1 cut(s) | 878 |
| TspRI | CASTG | 2 cut(s) | 67, 950 |
| VpaK11BI | GGWCC | 3 cut(s) | 251, 948, 1070 |
| VspI | ATTAAT | 2 cut(s) | 309, 660 |
| XapI | RAATTY | 1 cut(s) | 513 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 288 |
| XmnI | GAANNNNTTC | 1 cut(s) | 878 |
| XspI | CTAG | 1 cut(s) | 480 |
| ZraI | GACGTC | 1 cut(s) | 1092 |