zinc-binding in reverse transcriptase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| At2g31720-like | PF03754 | 155 - 252 | 4.9e-14 | B3 domain-containing protein At2g31720-like |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 266 |
| AccB1I | GGYRCC | 1 cut(s) | 266 |
| AccII | CGCG | 1 cut(s) | 697 |
| AccIII | TCCGGA | 1 cut(s) | 804 |
| AciI | CCGC | 2 cut(s) | 372, 697 |
| AclWI | GGATC | 2 cut(s) | 15, 781 |
| AcsI | RAATTY | 3 cut(s) | 73, 145, 245 |
| AcuI | CTGAAG | 1 cut(s) | 278 |
| AcyI | GRCGYC | 1 cut(s) | 383 |
| AfaI | GTAC | 4 cut(s) | 268, 343, 416, 898 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 208, 598, 822 |
| AgsI | TTSAA | 5 cut(s) | 150, 164, 190, 463, 476 |
| AjnI | CCWGG | 1 cut(s) | 631 |
| AleI | CACNNNNGTG | 1 cut(s) | 782 |
| AluBI | AGCT | 7 cut(s) | 29, 158, 178, 256, 554, 705, 944 |
| AluI | AGCT | 7 cut(s) | 29, 158, 178, 256, 554, 705, 944 |
| AlwI | GGATC | 2 cut(s) | 15, 781 |
| Ama87I | CYCGRG | 1 cut(s) | 386 |
| Aor13HI | TCCGGA | 1 cut(s) | 804 |
| ApeKI | GCWGC | 2 cut(s) | 755, 866 |
| ApoI | RAATTY | 3 cut(s) | 73, 145, 245 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 194 |
| Asp718I | GGTACC | 1 cut(s) | 266 |
| AsuC2I | CCSGG | 1 cut(s) | 871 |
| AsuHPI | GGTGA | 4 cut(s) | 71, 523, 863, 923 |
| AsuNHI | GCTAGC | 1 cut(s) | 113 |
| AvaI | CYCGRG | 1 cut(s) | 386 |
| BanI | GGYRCC | 1 cut(s) | 266 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 398, 430 |
| BbvI | GCAGC | 2 cut(s) | 742, 853 |
| BccI | CCATC | 4 cut(s) | 215, 735, 841, 902 |
| BciT130I | CCWGG | 1 cut(s) | 633 |
| BclI | TGATCA | 1 cut(s) | 85 |
| BcnI | CCSGG | 1 cut(s) | 871 |
| BfaI | CTAG | 3 cut(s) | 114, 894, 945 |
| BisI | GCNGC | 2 cut(s) | 756, 867 |
| BlsI | GCNGC | 2 cut(s) | 757, 868 |
| BmcAI | AGTACT | 3 cut(s) | 343, 416, 898 |
| Bme1390I | CCNGG | 2 cut(s) | 633, 871 |
| BmeT110I | CYCGRG | 1 cut(s) | 386 |
| BmiI | GGNNCC | 2 cut(s) | 268, 546 |
| BmrFI | CCNGG | 2 cut(s) | 633, 871 |
| BmsI | GCATC | 3 cut(s) | 172, 340, 383 |
| BmtI | GCTAGC | 1 cut(s) | 117 |
| BpuEI | CTTGAG | 1 cut(s) | 644 |
| BpuMI | CCSGG | 1 cut(s) | 871 |
| BsaHI | GRCGYC | 1 cut(s) | 383 |
| BsaJI | CCNNGG | 5 cut(s) | 21, 203, 270, 666, 777 |
| BsaWI | WCCGGW | 1 cut(s) | 804 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 208, 598, 822 |
| BseAI | TCCGGA | 1 cut(s) | 804 |
| BseBI | CCWGG | 1 cut(s) | 633 |
| BseDI | CCNNGG | 5 cut(s) | 21, 203, 270, 666, 777 |
| BseGI | GGATG | 3 cut(s) | 374, 787, 852 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 208, 598, 822 |
| BseMII | CTCAG | 1 cut(s) | 161 |
| BseRI | GAGGAG | 1 cut(s) | 939 |
| BseXI | GCAGC | 2 cut(s) | 742, 853 |
| BsgI | GTGCAG | 1 cut(s) | 517 |
| Bsh1236I | CGCG | 1 cut(s) | 697 |
| BshNI | GGYRCC | 1 cut(s) | 266 |
| BsiHKCI | CYCGRG | 1 cut(s) | 386 |
| BsiSI | CCGG | 2 cut(s) | 805, 870 |
| BslFI | GGGAC | 1 cut(s) | 224 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 208, 598, 822 |
| BsmFI | GGGAC | 1 cut(s) | 224 |
| BsoBI | CYCGRG | 1 cut(s) | 386 |
| Bsp13I | TCCGGA | 1 cut(s) | 804 |
| Bsp143I | GATC | 4 cut(s) | 7, 85, 786, 928 |
| Bsp19I | CCATGG | 1 cut(s) | 666 |
| BspACI | CCGC | 2 cut(s) | 372, 697 |
| BspCNI | CTCAG | 1 cut(s) | 162 |
| BspEI | TCCGGA | 1 cut(s) | 804 |
| BspFNI | CGCG | 1 cut(s) | 697 |
| BspLI | GGNNCC | 2 cut(s) | 268, 546 |
| BspOI | GCTAGC | 1 cut(s) | 117 |
| BspPI | GGATC | 2 cut(s) | 15, 781 |
| BspT107I | GGYRCC | 1 cut(s) | 266 |
| BssECI | CCNNGG | 5 cut(s) | 21, 203, 270, 666, 777 |
| BssMI | GATC | 4 cut(s) | 7, 85, 786, 928 |
| BssNI | GRCGYC | 1 cut(s) | 383 |
| BssT1I | CCWWGG | 3 cut(s) | 203, 270, 666 |
| Bst2UI | CCWGG | 1 cut(s) | 633 |
| Bst4CI | ACNGT | 2 cut(s) | 22, 299 |
| BstACI | GRCGYC | 1 cut(s) | 383 |
| BstC8I | GCNNGC | 2 cut(s) | 115, 505 |
| BstDEI | CTNAG | 3 cut(s) | 170, 279, 354 |
| BstDSI | CCRYGG | 3 cut(s) | 21, 666, 777 |
| BstF5I | GGATG | 3 cut(s) | 374, 787, 852 |
| BstFNI | CGCG | 1 cut(s) | 697 |
| BstKTI | GATC | 4 cut(s) | 10, 88, 789, 931 |
| BstMBI | GATC | 4 cut(s) | 7, 85, 786, 928 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 164, 551, 941 |
| BstNI | CCWGG | 1 cut(s) | 633 |
| BstSCI | CCNGG | 2 cut(s) | 631, 869 |
| BstUI | CGCG | 1 cut(s) | 697 |
| BstV1I | GCAGC | 2 cut(s) | 742, 853 |
| BstX2I | RGATCY | 1 cut(s) | 7 |
| BstYI | RGATCY | 1 cut(s) | 7 |
| BtgI | CCRYGG | 3 cut(s) | 21, 666, 777 |
| BtsCI | GGATG | 3 cut(s) | 374, 787, 852 |
| BtsIMutI | CAGTG | 1 cut(s) | 303 |
| Cac8I | GCNNGC | 2 cut(s) | 115, 505 |
| CseI | GACGC | 1 cut(s) | 391 |
| CsiI | ACCWGGT | 1 cut(s) | 631 |
| Csp6I | GTAC | 4 cut(s) | 267, 342, 415, 897 |
| CviAII | CATG | 2 cut(s) | 667, 932 |
| CviQI | GTAC | 4 cut(s) | 267, 342, 415, 897 |
| DdeI | CTNAG | 3 cut(s) | 170, 279, 354 |
| DpnI | GATC | 4 cut(s) | 9, 87, 788, 930 |
| DpnII | GATC | 4 cut(s) | 7, 85, 786, 928 |
| Eco130I | CCWWGG | 3 cut(s) | 203, 270, 666 |
| Eco57I | CTGAAG | 1 cut(s) | 278 |
| Eco88I | CYCGRG | 1 cut(s) | 386 |
| EcoRI | GAATTC | 3 cut(s) | 73, 145, 245 |
| EcoRII | CCWGG | 1 cut(s) | 631 |
| EcoT14I | CCWWGG | 3 cut(s) | 203, 270, 666 |
| ErhI | CCWWGG | 3 cut(s) | 203, 270, 666 |
| FaeI | CATG | 2 cut(s) | 670, 935 |
| FaqI | GGGAC | 1 cut(s) | 224 |
| FatI | CATG | 2 cut(s) | 666, 931 |
| FbaI | TGATCA | 1 cut(s) | 85 |
| Fnu4HI | GCNGC | 2 cut(s) | 756, 867 |
| FokI | GGATG | 3 cut(s) | 361, 794, 859 |
| Fsp4HI | GCNGC | 2 cut(s) | 756, 867 |
| FspBI | CTAG | 3 cut(s) | 114, 894, 945 |
| GluI | GCNGC | 2 cut(s) | 756, 867 |
| HapII | CCGG | 2 cut(s) | 805, 870 |
| HgaI | GACGC | 1 cut(s) | 391 |
| Hin1I | GRCGYC | 1 cut(s) | 383 |
| Hin1II | CATG | 2 cut(s) | 670, 935 |
| HindIII | AAGCTT | 1 cut(s) | 176 |
| HinfI | GANTC | 1 cut(s) | 275 |
| HpaII | CCGG | 2 cut(s) | 805, 870 |
| HphI | GGTGA | 4 cut(s) | 71, 523, 863, 923 |
| Hpy188I | TCNGA | 1 cut(s) | 496 |
| Hpy188III | TCNNGA | 6 cut(s) | 161, 250, 443, 463, 638, 805 |
| HpyAV | CCTTC | 2 cut(s) | 514, 598 |
| HpyCH4III | ACNGT | 2 cut(s) | 22, 299 |
| HpyCH4V | TGCA | 4 cut(s) | 34, 534, 758, 935 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 164, 551, 941 |
| HpyF3I | CTNAG | 3 cut(s) | 170, 279, 354 |
| Hsp92I | GRCGYC | 1 cut(s) | 383 |
| Hsp92II | CATG | 2 cut(s) | 670, 935 |
| Kpn2I | TCCGGA | 1 cut(s) | 804 |
| KpnI | GGTACC | 1 cut(s) | 270 |
| Ksp22I | TGATCA | 1 cut(s) | 85 |
| Kzo9I | GATC | 4 cut(s) | 7, 85, 786, 928 |
| LmnI | GCTCC | 3 cut(s) | 550, 702, 941 |
| LpnPI | CCDG | 9 cut(s) | 182, 349, 465, 562, 618, 645, 808, 818, 883 |
| Lsp1109I | GCAGC | 2 cut(s) | 742, 853 |
| LweI | GCATC | 3 cut(s) | 172, 340, 383 |
| MabI | ACCWGGT | 1 cut(s) | 631 |
| MaeI | CTAG | 3 cut(s) | 114, 894, 945 |
| MaeIII | GTNAC | 3 cut(s) | 59, 311, 430 |
| MalI | GATC | 4 cut(s) | 9, 87, 788, 930 |
| MboI | GATC | 4 cut(s) | 7, 85, 786, 928 |
| MboII | GAAGA | 7 cut(s) | 82, 137, 140, 271, 415, 418, 689 |
| MfeI | CAATTG | 1 cut(s) | 89 |
| MflI | RGATCY | 1 cut(s) | 7 |
| MluCI | AATT | 7 cut(s) | 73, 89, 132, 145, 233, 245, 641 |
| MlyI | GAGTC | 1 cut(s) | 269 |
| MnlI | CCTC | 7 cut(s) | 201, 231, 479, 493, 837, 847, 917 |
| MroI | TCCGGA | 1 cut(s) | 804 |
| MroXI | GAANNNNTTC | 1 cut(s) | 194 |
| MseI | TTAA | 4 cut(s) | 42, 672, 692, 771 |
| MslI | CAYNNNNRTG | 1 cut(s) | 782 |
| MspI | CCGG | 2 cut(s) | 805, 870 |
| MspR9I | CCNGG | 2 cut(s) | 633, 871 |
| MunI | CAATTG | 1 cut(s) | 89 |
| MvaI | CCWGG | 1 cut(s) | 633 |
| MvnI | CGCG | 1 cut(s) | 697 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 164, 551, 941 |
| NciI | CCSGG | 1 cut(s) | 871 |
| NcoI | CCATGG | 1 cut(s) | 666 |
| NdeII | GATC | 4 cut(s) | 7, 85, 786, 928 |
| NheI | GCTAGC | 1 cut(s) | 113 |
| NlaIII | CATG | 2 cut(s) | 670, 935 |
| NlaIV | GGNNCC | 2 cut(s) | 268, 546 |
| NmuCI | GTSAC | 1 cut(s) | 59 |
| OliI | CACNNNNGTG | 1 cut(s) | 782 |
| PdmI | GAANNNNTTC | 1 cut(s) | 194 |
| PkrI | GCNGC | 2 cut(s) | 757, 868 |
| PleI | GAGTC | 1 cut(s) | 269 |
| PpsI | GAGTC | 1 cut(s) | 269 |
| Psp6I | CCWGG | 1 cut(s) | 631 |
| PspGI | CCWGG | 1 cut(s) | 631 |
| PspN4I | GGNNCC | 2 cut(s) | 268, 546 |
| PsuI | RGATCY | 1 cut(s) | 7 |
| RsaI | GTAC | 4 cut(s) | 268, 343, 416, 898 |
| RsaNI | GTAC | 4 cut(s) | 267, 342, 415, 897 |
| RseI | CAYNNNNRTG | 1 cut(s) | 782 |
| SaqAI | TTAA | 4 cut(s) | 42, 672, 692, 771 |
| SatI | GCNGC | 2 cut(s) | 756, 867 |
| Sau3AI | GATC | 4 cut(s) | 7, 85, 786, 928 |
| ScaI | AGTACT | 3 cut(s) | 343, 416, 898 |
| SchI | GAGTC | 1 cut(s) | 269 |
| ScrFI | CCNGG | 2 cut(s) | 633, 871 |
| SexAI | ACCWGGT | 1 cut(s) | 631 |
| SfaNI | GCATC | 3 cut(s) | 172, 340, 383 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 782 |
| SmlI | CTYRAG | 1 cut(s) | 623 |
| SmoI | CTYRAG | 1 cut(s) | 623 |
| Sse9I | AATT | 7 cut(s) | 73, 89, 132, 145, 233, 245, 641 |
| SsiI | CCGC | 2 cut(s) | 372, 697 |
| SspI | AATATT | 1 cut(s) | 195 |
| SspMI | CTAG | 3 cut(s) | 114, 894, 945 |
| StyD4I | CCNGG | 2 cut(s) | 631, 869 |
| StyI | CCWWGG | 3 cut(s) | 203, 270, 666 |
| TaaI | ACNGT | 2 cut(s) | 22, 299 |
| TaqI | TCGA | 1 cut(s) | 739 |
| TasI | AATT | 7 cut(s) | 73, 89, 132, 145, 233, 245, 641 |
| TatI | WGTACW | 3 cut(s) | 341, 414, 896 |
| Tru1I | TTAA | 4 cut(s) | 42, 672, 692, 771 |
| Tru9I | TTAA | 4 cut(s) | 42, 672, 692, 771 |
| TscAI | CASTG | 1 cut(s) | 310 |
| TseFI | GTSAC | 1 cut(s) | 59 |
| TseI | GCWGC | 2 cut(s) | 755, 866 |
| Tsp45I | GTSAC | 1 cut(s) | 59 |
| TspDTI | ATGAA | 4 cut(s) | 308, 333, 425, 690 |
| TspGWI | ACGGA | 1 cut(s) | 794 |
| TspRI | CASTG | 1 cut(s) | 310 |
| XapI | RAATTY | 3 cut(s) | 73, 145, 245 |
| XmnI | GAANNNNTTC | 1 cut(s) | 194 |
| XspI | CTAG | 3 cut(s) | 114, 894, 945 |
| ZrmI | AGTACT | 3 cut(s) | 343, 416, 898 |