Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 287 |
| AccI | GTMKAC | 1 cut(s) | 105 |
| AccII | CGCG | 1 cut(s) | 56 |
| AccIII | TCCGGA | 1 cut(s) | 158 |
| AciI | CCGC | 3 cut(s) | 6, 49, 56 |
| AclI | AACGTT | 1 cut(s) | 570 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 12, 55, 121, 161, 182, 209 |
| AgsI | TTSAA | 1 cut(s) | 359 |
| AhlI | ACTAGT | 1 cut(s) | 94 |
| AjnI | CCWGG | 2 cut(s) | 193, 532 |
| AluBI | AGCT | 4 cut(s) | 254, 405, 480, 586 |
| AluI | AGCT | 4 cut(s) | 254, 405, 480, 586 |
| Alw26I | GTCTC | 1 cut(s) | 419 |
| Ama87I | CYCGRG | 1 cut(s) | 22 |
| Aor13HI | TCCGGA | 1 cut(s) | 158 |
| AoxI | GGCC | 2 cut(s) | 200, 211 |
| ApaI | GGGCCC | 2 cut(s) | 204, 215 |
| ApeKI | GCWGC | 2 cut(s) | 368, 377 |
| AseI | ATTAAT | 1 cut(s) | 330 |
| AspLEI | GCGC | 1 cut(s) | 288 |
| AspS9I | GGNCC | 4 cut(s) | 200, 201, 211, 212 |
| AsuC2I | CCSGG | 1 cut(s) | 177 |
| AsuHPI | GGTGA | 2 cut(s) | 311, 482 |
| AvaI | CYCGRG | 1 cut(s) | 22 |
| BaeGI | GKGCMC | 2 cut(s) | 204, 215 |
| BanII | GRGCYC | 2 cut(s) | 204, 215 |
| BbvI | GCAGC | 2 cut(s) | 355, 389 |
| BccI | CCATC | 3 cut(s) | 163, 260, 588 |
| BciT130I | CCWGG | 2 cut(s) | 195, 534 |
| BclI | TGATCA | 1 cut(s) | 118 |
| BcnI | CCSGG | 1 cut(s) | 177 |
| BcoDI | GTCTC | 1 cut(s) | 419 |
| BcuI | ACTAGT | 1 cut(s) | 94 |
| BfaI | CTAG | 3 cut(s) | 95, 372, 497 |
| BfmI | CTRYAG | 1 cut(s) | 255 |
| BisI | GCNGC | 3 cut(s) | 57, 369, 378 |
| BlsI | GCNGC | 3 cut(s) | 58, 370, 379 |
| Bme1390I | CCNGG | 3 cut(s) | 177, 195, 534 |
| BmeT110I | CYCGRG | 1 cut(s) | 22 |
| BmgT120I | GGNCC | 4 cut(s) | 200, 201, 211, 212 |
| BmiI | GGNNCC | 4 cut(s) | 201, 202, 212, 213 |
| BmrFI | CCNGG | 3 cut(s) | 177, 195, 534 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 464, 496 |
| BpuEI | CTTGAG | 1 cut(s) | 576 |
| BpuMI | CCSGG | 1 cut(s) | 177 |
| BsaJI | CCNNGG | 3 cut(s) | 176, 193, 194 |
| BsaWI | WCCGGW | 1 cut(s) | 158 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 12, 55, 121, 161, 182, 209 |
| BseAI | TCCGGA | 1 cut(s) | 158 |
| BseBI | CCWGG | 2 cut(s) | 195, 534 |
| BseDI | CCNNGG | 3 cut(s) | 176, 193, 194 |
| BseGI | GGATG | 2 cut(s) | 155, 508 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 12, 55, 121, 161, 182, 209 |
| BseSI | GKGCMC | 2 cut(s) | 204, 215 |
| BseXI | GCAGC | 2 cut(s) | 355, 389 |
| BseYI | CCCAGC | 1 cut(s) | 203 |
| Bsh1236I | CGCG | 1 cut(s) | 56 |
| Bsh1285I | CGRYCG | 1 cut(s) | 49 |
| BshFI | GGCC | 2 cut(s) | 202, 213 |
| BsiEI | CGRYCG | 1 cut(s) | 49 |
| BsiHKCI | CYCGRG | 1 cut(s) | 22 |
| BsiSI | CCGG | 2 cut(s) | 159, 176 |
| BslFI | GGGAC | 4 cut(s) | 60, 97, 105, 201 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 12, 55, 121, 161, 182, 209 |
| BsmAI | GTCTC | 1 cut(s) | 419 |
| BsmFI | GGGAC | 4 cut(s) | 60, 97, 105, 201 |
| BsmI | GAATGC | 1 cut(s) | 340 |
| BsnI | GGCC | 2 cut(s) | 202, 213 |
| BsoBI | CYCGRG | 1 cut(s) | 22 |
| Bsp120I | GGGCCC | 2 cut(s) | 200, 211 |
| Bsp1286I | GDGCHC | 2 cut(s) | 204, 215 |
| Bsp13I | TCCGGA | 1 cut(s) | 158 |
| Bsp143I | GATC | 1 cut(s) | 118 |
| BspACI | CCGC | 3 cut(s) | 6, 49, 56 |
| BspANI | GGCC | 2 cut(s) | 202, 213 |
| BspEI | TCCGGA | 1 cut(s) | 158 |
| BspFNI | CGCG | 1 cut(s) | 56 |
| BspLI | GGNNCC | 4 cut(s) | 201, 202, 212, 213 |
| BssECI | CCNNGG | 3 cut(s) | 176, 193, 194 |
| BssMI | GATC | 1 cut(s) | 118 |
| Bst2UI | CCWGG | 2 cut(s) | 195, 534 |
| Bst4CI | ACNGT | 3 cut(s) | 66, 74, 103 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 368 |
| BstC8I | GCNNGC | 3 cut(s) | 382, 437, 588 |
| BstF5I | GGATG | 2 cut(s) | 155, 508 |
| BstFNI | CGCG | 1 cut(s) | 56 |
| BstHHI | GCGC | 1 cut(s) | 288 |
| BstKTI | GATC | 1 cut(s) | 121 |
| BstMAI | GTCTC | 1 cut(s) | 419 |
| BstMBI | GATC | 1 cut(s) | 118 |
| BstMCI | CGRYCG | 1 cut(s) | 49 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 368, 374, 377, 572, 596 |
| BstNI | CCWGG | 2 cut(s) | 195, 534 |
| BstSCI | CCNGG | 3 cut(s) | 175, 193, 532 |
| BstSFI | CTRYAG | 1 cut(s) | 255 |
| BstSLI | GKGCMC | 2 cut(s) | 204, 215 |
| BstUI | CGCG | 1 cut(s) | 56 |
| BstV1I | GCAGC | 2 cut(s) | 355, 389 |
| BsuRI | GGCC | 2 cut(s) | 202, 213 |
| BtsCI | GGATG | 2 cut(s) | 155, 508 |
| BtsIMutI | CAGTG | 2 cut(s) | 36, 253 |
| Cac8I | GCNNGC | 3 cut(s) | 382, 437, 588 |
| CfoI | GCGC | 1 cut(s) | 288 |
| Cfr13I | GGNCC | 4 cut(s) | 200, 201, 211, 212 |
| CviAII | CATG | 1 cut(s) | 87 |
| DpnI | GATC | 1 cut(s) | 120 |
| DpnII | GATC | 1 cut(s) | 118 |
| Eco24I | GRGCYC | 2 cut(s) | 204, 215 |
| Eco88I | CYCGRG | 1 cut(s) | 22 |
| EcoO109I | RGGNCCY | 2 cut(s) | 200, 211 |
| EcoRII | CCWGG | 2 cut(s) | 193, 532 |
| EcoT38I | GRGCYC | 2 cut(s) | 204, 215 |
| FaeI | CATG | 1 cut(s) | 90 |
| FaiI | YATR | 6 cut(s) | 88, 272, 353, 402, 416, 552 |
| FaqI | GGGAC | 4 cut(s) | 60, 97, 105, 201 |
| FatI | CATG | 1 cut(s) | 86 |
| FbaI | TGATCA | 1 cut(s) | 118 |
| FblI | GTMKAC | 1 cut(s) | 105 |
| Fnu4HI | GCNGC | 3 cut(s) | 57, 369, 378 |
| FokI | GGATG | 2 cut(s) | 142, 515 |
| FriOI | GRGCYC | 2 cut(s) | 204, 215 |
| Fsp4HI | GCNGC | 3 cut(s) | 57, 369, 378 |
| FspBI | CTAG | 3 cut(s) | 95, 372, 497 |
| FspI | TGCGCA | 1 cut(s) | 287 |
| GlaI | GCGC | 1 cut(s) | 287 |
| GluI | GCNGC | 3 cut(s) | 57, 369, 378 |
| GsaI | CCCAGC | 1 cut(s) | 207 |
| HaeIII | GGCC | 2 cut(s) | 202, 213 |
| HapII | CCGG | 2 cut(s) | 159, 176 |
| HhaI | GCGC | 1 cut(s) | 288 |
| Hin1II | CATG | 1 cut(s) | 90 |
| Hin6I | GCGC | 1 cut(s) | 286 |
| HinP1I | GCGC | 1 cut(s) | 286 |
| HinfI | GANTC | 1 cut(s) | 189 |
| HpaII | CCGG | 2 cut(s) | 159, 176 |
| HphI | GGTGA | 2 cut(s) | 311, 482 |
| Hpy166II | GTNNAC | 1 cut(s) | 106 |
| Hpy188I | TCNGA | 2 cut(s) | 70, 484 |
| Hpy188III | TCNNGA | 3 cut(s) | 22, 159, 560 |
| Hpy8I | GTNNAC | 1 cut(s) | 106 |
| HpyAV | CCTTC | 1 cut(s) | 486 |
| HpyCH4III | ACNGT | 3 cut(s) | 66, 74, 103 |
| HpyCH4IV | ACGT | 1 cut(s) | 570 |
| HpyCH4V | TGCA | 3 cut(s) | 340, 439, 575 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 368, 374, 377, 572, 596 |
| HpySE526I | ACGT | 1 cut(s) | 570 |
| Hsp92II | CATG | 1 cut(s) | 90 |
| HspAI | GCGC | 1 cut(s) | 286 |
| Kpn2I | TCCGGA | 1 cut(s) | 158 |
| Ksp22I | TGATCA | 1 cut(s) | 118 |
| Kzo9I | GATC | 1 cut(s) | 118 |
| LmnI | GCTCC | 1 cut(s) | 485 |
| Lsp1109I | GCAGC | 2 cut(s) | 355, 389 |
| MaeI | CTAG | 3 cut(s) | 95, 372, 497 |
| MaeII | ACGT | 1 cut(s) | 570 |
| MaeIII | GTNAC | 2 cut(s) | 60, 97 |
| MalI | GATC | 1 cut(s) | 120 |
| MboI | GATC | 1 cut(s) | 118 |
| MfeI | CAATTG | 1 cut(s) | 289 |
| MhlI | GDGCHC | 2 cut(s) | 204, 215 |
| MluCI | AATT | 4 cut(s) | 289, 331, 519, 541 |
| MlyI | GAGTC | 1 cut(s) | 183 |
| MnlI | CCTC | 7 cut(s) | 18, 144, 155, 290, 451, 460, 466 |
| MroI | TCCGGA | 1 cut(s) | 158 |
| MseI | TTAA | 3 cut(s) | 330, 522, 607 |
| MspI | CCGG | 2 cut(s) | 159, 176 |
| MspR9I | CCNGG | 3 cut(s) | 177, 195, 534 |
| MunI | CAATTG | 1 cut(s) | 289 |
| Mva1269I | GAATGC | 1 cut(s) | 340 |
| MvaI | CCWGG | 2 cut(s) | 195, 534 |
| MvnI | CGCG | 1 cut(s) | 56 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 368, 374, 377, 572, 596 |
| NciI | CCSGG | 1 cut(s) | 177 |
| NdeII | GATC | 1 cut(s) | 118 |
| NlaIII | CATG | 1 cut(s) | 90 |
| NlaIV | GGNNCC | 4 cut(s) | 201, 202, 212, 213 |
| NmuCI | GTSAC | 1 cut(s) | 97 |
| NsbI | TGCGCA | 1 cut(s) | 287 |
| PaeR7I | CTCGAG | 1 cut(s) | 22 |
| PasI | CCCWGGG | 1 cut(s) | 194 |
| PctI | GAATGC | 1 cut(s) | 340 |
| PkrI | GCNGC | 3 cut(s) | 58, 370, 379 |
| PleI | GAGTC | 1 cut(s) | 183 |
| PpsI | GAGTC | 1 cut(s) | 183 |
| PshBI | ATTAAT | 1 cut(s) | 330 |
| Psp1406I | AACGTT | 1 cut(s) | 570 |
| Psp6I | CCWGG | 2 cut(s) | 193, 532 |
| PspFI | CCCAGC | 1 cut(s) | 203 |
| PspGI | CCWGG | 2 cut(s) | 193, 532 |
| PspN4I | GGNNCC | 4 cut(s) | 201, 202, 212, 213 |
| PspOMI | GGGCCC | 2 cut(s) | 200, 211 |
| PspPI | GGNCC | 4 cut(s) | 200, 201, 211, 212 |
| SaqAI | TTAA | 3 cut(s) | 330, 522, 607 |
| SatI | GCNGC | 3 cut(s) | 57, 369, 378 |
| Sau3AI | GATC | 1 cut(s) | 118 |
| Sau96I | GGNCC | 4 cut(s) | 200, 201, 211, 212 |
| SchI | GAGTC | 1 cut(s) | 183 |
| ScrFI | CCNGG | 3 cut(s) | 177, 195, 534 |
| SduI | GDGCHC | 2 cut(s) | 204, 215 |
| SetI | ASST | 8 cut(s) | 166, 256, 277, 301, 407, 482, 573, 588 |
| SfcI | CTRYAG | 1 cut(s) | 255 |
| Sfr274I | CTCGAG | 1 cut(s) | 22 |
| SlaI | CTCGAG | 1 cut(s) | 22 |
| SmlI | CTYRAG | 2 cut(s) | 22, 591 |
| SmoI | CTYRAG | 2 cut(s) | 22, 591 |
| SpeI | ACTAGT | 1 cut(s) | 94 |
| Sse9I | AATT | 4 cut(s) | 289, 331, 519, 541 |
| SsiI | CCGC | 3 cut(s) | 6, 49, 56 |
| SspMI | CTAG | 3 cut(s) | 95, 372, 497 |
| StyD4I | CCNGG | 3 cut(s) | 175, 193, 532 |
| TaaI | ACNGT | 3 cut(s) | 66, 74, 103 |
| TaiI | ACGT | 1 cut(s) | 573 |
| TaqI | TCGA | 2 cut(s) | 23, 396 |
| TasI | AATT | 4 cut(s) | 289, 331, 519, 541 |
| TauI | GCSGC | 1 cut(s) | 59 |
| Tru1I | TTAA | 3 cut(s) | 330, 522, 607 |
| Tru9I | TTAA | 3 cut(s) | 330, 522, 607 |
| TscAI | CASTG | 2 cut(s) | 43, 253 |
| TseFI | GTSAC | 1 cut(s) | 97 |
| TseI | GCWGC | 2 cut(s) | 368, 377 |
| Tsp45I | GTSAC | 1 cut(s) | 97 |
| TspGWI | ACGGA | 1 cut(s) | 28 |
| TspRI | CASTG | 2 cut(s) | 43, 253 |
| VspI | ATTAAT | 1 cut(s) | 330 |
| XhoI | CTCGAG | 1 cut(s) | 22 |
| XmiI | GTMKAC | 1 cut(s) | 105 |
| XspI | CTAG | 3 cut(s) | 95, 372, 497 |