ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_1 | PF00078 | 12 - 146 | 1.2e-09 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 537 |
| AclWI | GGATC | 4 cut(s) | 715, 728, 915, 1012 |
| AcsI | RAATTY | 1 cut(s) | 285 |
| AcuI | CTGAAG | 1 cut(s) | 792 |
| AfaI | GTAC | 5 cut(s) | 431, 508, 669, 769, 808 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 74, 764, 799 |
| AflIII | ACRYGT | 2 cut(s) | 267, 670 |
| AgsI | TTSAA | 8 cut(s) | 128, 175, 249, 280, 352, 416, 559, 677 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 657, 689 |
| AluBI | AGCT | 4 cut(s) | 596, 633, 868, 998 |
| AluI | AGCT | 4 cut(s) | 596, 633, 868, 998 |
| Alw21I | GWGCWC | 1 cut(s) | 870 |
| Alw26I | GTCTC | 3 cut(s) | 58, 76, 516 |
| AlwI | GGATC | 4 cut(s) | 715, 728, 915, 1012 |
| Ama87I | CYCGRG | 1 cut(s) | 72 |
| AoxI | GGCC | 1 cut(s) | 294 |
| ApoI | RAATTY | 1 cut(s) | 285 |
| AspA2I | CCTAGG | 1 cut(s) | 433 |
| AsuHPI | GGTGA | 4 cut(s) | 508, 574, 701, 914 |
| AvaI | CYCGRG | 1 cut(s) | 72 |
| AvrII | CCTAGG | 1 cut(s) | 433 |
| BamHI | GGATCC | 1 cut(s) | 720 |
| BanII | GRGCYC | 1 cut(s) | 870 |
| BauI | CACGAG | 1 cut(s) | 830 |
| BbsI | GAAGAC | 1 cut(s) | 547 |
| Bbv12I | GWGCWC | 1 cut(s) | 870 |
| BccI | CCATC | 1 cut(s) | 510 |
| BceAI | ACGGC | 1 cut(s) | 349 |
| BclI | TGATCA | 1 cut(s) | 144 |
| BcoDI | GTCTC | 3 cut(s) | 58, 76, 516 |
| BfaI | CTAG | 3 cut(s) | 398, 434, 981 |
| BfmI | CTRYAG | 2 cut(s) | 940, 1046 |
| BlnI | CCTAGG | 1 cut(s) | 433 |
| BmeT110I | CYCGRG | 1 cut(s) | 72 |
| BmiI | GGNNCC | 1 cut(s) | 722 |
| BmsI | GCATC | 2 cut(s) | 82, 579 |
| BpiI | GAAGAC | 1 cut(s) | 547 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 55, 87 |
| BpmI | CTGGAG | 1 cut(s) | 831 |
| BpuEI | CTTGAG | 1 cut(s) | 495 |
| BsaAI | YACGTR | 1 cut(s) | 671 |
| BsaI | GGTCTC | 1 cut(s) | 58 |
| BsaJI | CCNNGG | 2 cut(s) | 433, 716 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 171, 201, 254, 284, 657, 687, 830, 860 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 74, 764, 799 |
| Bse1I | ACTGG | 2 cut(s) | 814, 981 |
| BseDI | CCNNGG | 2 cut(s) | 433, 716 |
| BseGI | GGATG | 3 cut(s) | 97, 235, 521 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 74, 764, 799 |
| BseMII | CTCAG | 5 cut(s) | 53, 71, 466, 547, 901 |
| BseNI | ACTGG | 2 cut(s) | 814, 981 |
| BseRI | GAGGAG | 2 cut(s) | 643, 851 |
| BshFI | GGCC | 1 cut(s) | 296 |
| BsiHKAI | GWGCWC | 1 cut(s) | 870 |
| BsiHKCI | CYCGRG | 1 cut(s) | 72 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 74, 764, 799 |
| BsmAI | GTCTC | 3 cut(s) | 58, 76, 516 |
| BsnI | GGCC | 1 cut(s) | 296 |
| Bso31I | GGTCTC | 1 cut(s) | 58 |
| BsoBI | CYCGRG | 1 cut(s) | 72 |
| Bsp1286I | GDGCHC | 1 cut(s) | 870 |
| Bsp143I | GATC | 5 cut(s) | 144, 448, 720, 907, 1004 |
| BspACI | CCGC | 1 cut(s) | 537 |
| BspANI | GGCC | 1 cut(s) | 296 |
| BspCNI | CTCAG | 5 cut(s) | 54, 72, 465, 546, 900 |
| BspLI | GGNNCC | 1 cut(s) | 722 |
| BspPI | GGATC | 4 cut(s) | 715, 728, 915, 1012 |
| BspTNI | GGTCTC | 1 cut(s) | 58 |
| BsrI | ACTGG | 2 cut(s) | 814, 981 |
| BssECI | CCNNGG | 2 cut(s) | 433, 716 |
| BssMI | GATC | 5 cut(s) | 144, 448, 720, 907, 1004 |
| BssSI | CACGAG | 1 cut(s) | 830 |
| BssT1I | CCWWGG | 2 cut(s) | 433, 716 |
| Bst2BI | CACGAG | 1 cut(s) | 830 |
| Bst4CI | ACNGT | 6 cut(s) | 8, 19, 378, 944, 1035, 1047 |
| Bst6I | CTCTTC | 1 cut(s) | 329 |
| BstBAI | YACGTR | 1 cut(s) | 671 |
| BstC8I | GCNNGC | 1 cut(s) | 594 |
| BstDEI | CTNAG | 6 cut(s) | 62, 80, 452, 533, 699, 887 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 797 |
| BstF5I | GGATG | 3 cut(s) | 97, 235, 521 |
| BstKTI | GATC | 5 cut(s) | 147, 451, 723, 910, 1007 |
| BstMAI | GTCTC | 3 cut(s) | 58, 76, 516 |
| BstMBI | GATC | 5 cut(s) | 144, 448, 720, 907, 1004 |
| BstSFI | CTRYAG | 2 cut(s) | 940, 1046 |
| BstV2I | GAAGAC | 1 cut(s) | 547 |
| BstX2I | RGATCY | 1 cut(s) | 720 |
| BstYI | RGATCY | 1 cut(s) | 720 |
| BsuRI | GGCC | 1 cut(s) | 296 |
| BtsCI | GGATG | 3 cut(s) | 97, 235, 521 |
| BtsI | GCAGTG | 1 cut(s) | 752 |
| BtsIMutI | CAGTG | 3 cut(s) | 444, 752, 949 |
| Cac8I | GCNNGC | 1 cut(s) | 594 |
| CseI | GACGC | 1 cut(s) | 479 |
| Csp6I | GTAC | 5 cut(s) | 430, 507, 668, 768, 807 |
| CviAII | CATG | 5 cut(s) | 51, 193, 422, 624, 918 |
| CviJI | RGCY | 9 cut(s) | 296, 439, 596, 633, 829, 868, 973, 980, 998 |
| CviKI_1 | RGCY | 9 cut(s) | 296, 439, 596, 633, 829, 868, 973, 980, 998 |
| CviQI | GTAC | 5 cut(s) | 430, 507, 668, 768, 807 |
| DdeI | CTNAG | 6 cut(s) | 62, 80, 452, 533, 699, 887 |
| DpnI | GATC | 5 cut(s) | 146, 450, 722, 909, 1006 |
| DpnII | GATC | 5 cut(s) | 144, 448, 720, 907, 1004 |
| DraI | TTTAAA | 1 cut(s) | 742 |
| Eam1104I | CTCTTC | 1 cut(s) | 329 |
| EarI | CTCTTC | 1 cut(s) | 329 |
| Ecl136II | GAGCTC | 1 cut(s) | 868 |
| Eco130I | CCWWGG | 2 cut(s) | 433, 716 |
| Eco24I | GRGCYC | 1 cut(s) | 870 |
| Eco31I | GGTCTC | 1 cut(s) | 58 |
| Eco53kI | GAGCTC | 1 cut(s) | 868 |
| Eco57I | CTGAAG | 1 cut(s) | 792 |
| Eco88I | CYCGRG | 1 cut(s) | 72 |
| EcoICRI | GAGCTC | 1 cut(s) | 868 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 797 |
| EcoT14I | CCWWGG | 2 cut(s) | 433, 716 |
| EcoT38I | GRGCYC | 1 cut(s) | 870 |
| ErhI | CCWWGG | 2 cut(s) | 433, 716 |
| FaeI | CATG | 5 cut(s) | 54, 196, 425, 627, 921 |
| FatI | CATG | 5 cut(s) | 50, 192, 421, 623, 917 |
| FbaI | TGATCA | 1 cut(s) | 144 |
| FokI | GGATG | 3 cut(s) | 104, 242, 528 |
| FriOI | GRGCYC | 1 cut(s) | 870 |
| FspBI | CTAG | 3 cut(s) | 398, 434, 981 |
| GsuI | CTGGAG | 1 cut(s) | 831 |
| HaeIII | GGCC | 1 cut(s) | 296 |
| HgaI | GACGC | 1 cut(s) | 479 |
| Hin1II | CATG | 5 cut(s) | 54, 196, 425, 627, 921 |
| HincII | GTYRAC | 1 cut(s) | 657 |
| HindII | GTYRAC | 1 cut(s) | 657 |
| HindIII | AAGCTT | 1 cut(s) | 996 |
| HinfI | GANTC | 2 cut(s) | 233, 1010 |
| HphI | GGTGA | 4 cut(s) | 508, 574, 701, 914 |
| Hpy166II | GTNNAC | 2 cut(s) | 657, 849 |
| Hpy188I | TCNGA | 4 cut(s) | 63, 81, 588, 1009 |
| Hpy188III | TCNNGA | 2 cut(s) | 647, 1002 |
| Hpy8I | GTNNAC | 2 cut(s) | 657, 849 |
| HpyAV | CCTTC | 2 cut(s) | 358, 797 |
| HpyCH4III | ACNGT | 6 cut(s) | 8, 19, 378, 944, 1035, 1047 |
| HpyCH4IV | ACGT | 3 cut(s) | 267, 505, 670 |
| HpyCH4V | TGCA | 6 cut(s) | 95, 192, 592, 763, 1019, 1041 |
| HpyF3I | CTNAG | 6 cut(s) | 62, 80, 452, 533, 699, 887 |
| HpySE526I | ACGT | 3 cut(s) | 267, 505, 670 |
| Hsp92II | CATG | 5 cut(s) | 54, 196, 425, 627, 921 |
| Ksp22I | TGATCA | 1 cut(s) | 144 |
| Kzo9I | GATC | 5 cut(s) | 144, 448, 720, 907, 1004 |
| LmnI | GCTCC | 1 cut(s) | 630 |
| LpnPI | CCDG | 4 cut(s) | 528, 647, 795, 962 |
| LweI | GCATC | 2 cut(s) | 82, 579 |
| MaeI | CTAG | 3 cut(s) | 398, 434, 981 |
| MaeII | ACGT | 3 cut(s) | 267, 505, 670 |
| MaeIII | GTNAC | 4 cut(s) | 19, 455, 710, 788 |
| MalI | GATC | 5 cut(s) | 146, 450, 722, 909, 1006 |
| MboI | GATC | 5 cut(s) | 144, 448, 720, 907, 1004 |
| MboII | GAAGA | 3 cut(s) | 346, 547, 785 |
| MflI | RGATCY | 1 cut(s) | 720 |
| MhlI | GDGCHC | 1 cut(s) | 870 |
| MluCI | AATT | 5 cut(s) | 96, 285, 599, 650, 736 |
| MlyI | GAGTC | 1 cut(s) | 227 |
| MmeI | TCCRAC | 1 cut(s) | 797 |
| MseI | TTAA | 5 cut(s) | 183, 324, 602, 741, 876 |
| MspA1I | CMGCKG | 1 cut(s) | 537 |
| NdeII | GATC | 5 cut(s) | 144, 448, 720, 907, 1004 |
| NlaIII | CATG | 5 cut(s) | 54, 196, 425, 627, 921 |
| NlaIV | GGNNCC | 1 cut(s) | 722 |
| NmuCI | GTSAC | 2 cut(s) | 710, 788 |
| PaeR7I | CTCGAG | 1 cut(s) | 72 |
| PfeI | GAWTC | 1 cut(s) | 1010 |
| PleI | GAGTC | 1 cut(s) | 227 |
| PpsI | GAGTC | 1 cut(s) | 227 |
| Ppu21I | YACGTR | 1 cut(s) | 671 |
| Psp124BI | GAGCTC | 1 cut(s) | 870 |
| PspN4I | GGNNCC | 1 cut(s) | 722 |
| PspXI | VCTCGAGB | 1 cut(s) | 72 |
| PsuI | RGATCY | 1 cut(s) | 720 |
| RsaI | GTAC | 5 cut(s) | 431, 508, 669, 769, 808 |
| RsaNI | GTAC | 5 cut(s) | 430, 507, 668, 768, 807 |
| SacI | GAGCTC | 1 cut(s) | 870 |
| SaqAI | TTAA | 5 cut(s) | 183, 324, 602, 741, 876 |
| Sau3AI | GATC | 5 cut(s) | 144, 448, 720, 907, 1004 |
| SchI | GAGTC | 1 cut(s) | 227 |
| SduI | GDGCHC | 1 cut(s) | 870 |
| SfaNI | GCATC | 2 cut(s) | 82, 579 |
| SfcI | CTRYAG | 2 cut(s) | 940, 1046 |
| Sfr274I | CTCGAG | 1 cut(s) | 72 |
| SlaI | CTCGAG | 1 cut(s) | 72 |
| SmlI | CTYRAG | 2 cut(s) | 72, 510 |
| SmoI | CTYRAG | 2 cut(s) | 72, 510 |
| Sse9I | AATT | 5 cut(s) | 96, 285, 599, 650, 736 |
| SsiI | CCGC | 1 cut(s) | 537 |
| SspMI | CTAG | 3 cut(s) | 398, 434, 981 |
| SstI | GAGCTC | 1 cut(s) | 870 |
| StyI | CCWWGG | 2 cut(s) | 433, 716 |
| TaaI | ACNGT | 6 cut(s) | 8, 19, 378, 944, 1035, 1047 |
| TaiI | ACGT | 3 cut(s) | 270, 508, 673 |
| TaqI | TCGA | 1 cut(s) | 73 |
| TasI | AATT | 5 cut(s) | 96, 285, 599, 650, 736 |
| TfiI | GAWTC | 1 cut(s) | 1010 |
| Tru1I | TTAA | 5 cut(s) | 183, 324, 602, 741, 876 |
| Tru9I | TTAA | 5 cut(s) | 183, 324, 602, 741, 876 |
| TscAI | CASTG | 3 cut(s) | 451, 759, 949 |
| TseFI | GTSAC | 2 cut(s) | 710, 788 |
| Tsp45I | GTSAC | 2 cut(s) | 710, 788 |
| TspDTI | ATGAA | 4 cut(s) | 17, 209, 297, 837 |
| TspGWI | ACGGA | 2 cut(s) | 93, 242 |
| TspRI | CASTG | 3 cut(s) | 451, 759, 949 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 797 |
| XapI | RAATTY | 1 cut(s) | 285 |
| XhoI | CTCGAG | 1 cut(s) | 72 |
| XmaJI | CCTAGG | 1 cut(s) | 433 |
| XspI | CTAG | 3 cut(s) | 398, 434, 981 |