ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 136 |
| Acc36I | ACCTGC | 1 cut(s) | 136 |
| AccI | GTMKAC | 1 cut(s) | 119 |
| AciI | CCGC | 3 cut(s) | 133, 454, 586 |
| AclWI | GGATC | 1 cut(s) | 986 |
| AfaI | GTAC | 3 cut(s) | 1178, 1214, 1449 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 216, 1037 |
| AflII | CTTAAG | 1 cut(s) | 14 |
| AflIII | ACRYGT | 2 cut(s) | 64, 1290 |
| AgsI | TTSAA | 7 cut(s) | 181, 592, 605, 613, 790, 827, 1428 |
| AjiI | CACGTC | 1 cut(s) | 67 |
| AjnI | CCWGG | 3 cut(s) | 209, 298, 1239 |
| AleI | CACNNNNGTG | 1 cut(s) | 69 |
| AluBI | AGCT | 7 cut(s) | 421, 466, 580, 786, 934, 1210, 1344 |
| AluI | AGCT | 7 cut(s) | 421, 466, 580, 786, 934, 1210, 1344 |
| Alw21I | GWGCWC | 5 cut(s) | 13, 224, 570, 582, 1151 |
| Alw44I | GTGCAC | 1 cut(s) | 220 |
| AlwI | GGATC | 1 cut(s) | 986 |
| AoxI | GGCC | 1 cut(s) | 18 |
| ApaLI | GTGCAC | 1 cut(s) | 220 |
| ApeKI | GCWGC | 1 cut(s) | 463 |
| AsuC2I | CCSGG | 1 cut(s) | 839 |
| AsuHPI | GGTGA | 4 cut(s) | 424, 551, 571, 1118 |
| AsuII | TTCGAA | 1 cut(s) | 153 |
| BaeGI | GKGCMC | 2 cut(s) | 224, 1436 |
| BanII | GRGCYC | 1 cut(s) | 582 |
| BbsI | GAAGAC | 1 cut(s) | 1448 |
| Bbv12I | GWGCWC | 5 cut(s) | 13, 224, 570, 582, 1151 |
| BbvI | GCAGC | 1 cut(s) | 475 |
| BccI | CCATC | 2 cut(s) | 197, 1167 |
| BciT130I | CCWGG | 3 cut(s) | 211, 300, 1241 |
| BciVI | GTATCC | 1 cut(s) | 541 |
| BclI | TGATCA | 2 cut(s) | 936, 1413 |
| BcnI | CCSGG | 1 cut(s) | 839 |
| BfaI | CTAG | 1 cut(s) | 162 |
| BfmI | CTRYAG | 2 cut(s) | 225, 867 |
| BfrI | CTTAAG | 1 cut(s) | 14 |
| BfuAI | ACCTGC | 1 cut(s) | 136 |
| BfuI | GTATCC | 1 cut(s) | 541 |
| BisI | GCNGC | 1 cut(s) | 464 |
| BlsI | GCNGC | 1 cut(s) | 465 |
| Bme1390I | CCNGG | 4 cut(s) | 211, 300, 839, 1241 |
| BmgBI | CACGTC | 1 cut(s) | 67 |
| BmiI | GGNNCC | 2 cut(s) | 208, 280 |
| BmrFI | CCNGG | 4 cut(s) | 211, 300, 839, 1241 |
| BmsI | GCATC | 2 cut(s) | 235, 887 |
| BpiI | GAAGAC | 1 cut(s) | 1448 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 330, 362, 564, 596, 1138, 1170 |
| BpmI | CTGGAG | 2 cut(s) | 321, 1067 |
| Bpu14I | TTCGAA | 1 cut(s) | 153 |
| BpuMI | CCSGG | 1 cut(s) | 839 |
| BsaJI | CCNNGG | 4 cut(s) | 282, 838, 1063, 1240 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 270, 300 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 216, 1037 |
| Bse1I | ACTGG | 4 cut(s) | 497, 675, 713, 1050 |
| Bse3DI | GCAATG | 3 cut(s) | 465, 1017, 1228 |
| BseBI | CCWGG | 3 cut(s) | 211, 300, 1241 |
| BseDI | CCNNGG | 4 cut(s) | 282, 838, 1063, 1240 |
| BseGI | GGATG | 2 cut(s) | 374, 1284 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 216, 1037 |
| BseMI | GCAATG | 3 cut(s) | 465, 1017, 1228 |
| BseMII | CTCAG | 3 cut(s) | 361, 399, 1134 |
| BseNI | ACTGG | 4 cut(s) | 497, 675, 713, 1050 |
| BseRI | GAGGAG | 2 cut(s) | 425, 590 |
| BseSI | GKGCMC | 2 cut(s) | 224, 1436 |
| BseXI | GCAGC | 1 cut(s) | 475 |
| BseYI | CCCAGC | 1 cut(s) | 264 |
| BsgI | GTGCAG | 2 cut(s) | 108, 383 |
| Bsh1285I | CGRYCG | 1 cut(s) | 586 |
| BshFI | GGCC | 1 cut(s) | 20 |
| BsiEI | CGRYCG | 1 cut(s) | 586 |
| BsiHKAI | GWGCWC | 5 cut(s) | 13, 224, 570, 582, 1151 |
| BsiSI | CCGG | 1 cut(s) | 838 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 216, 1037 |
| BsmI | GAATGC | 2 cut(s) | 522, 598 |
| BsnI | GGCC | 1 cut(s) | 20 |
| Bsp119I | TTCGAA | 1 cut(s) | 153 |
| Bsp1286I | GDGCHC | 6 cut(s) | 13, 224, 570, 582, 1151, 1436 |
| Bsp143I | GATC | 6 cut(s) | 354, 371, 936, 950, 978, 1413 |
| Bsp19I | CCATGG | 1 cut(s) | 1063 |
| BspACI | CCGC | 3 cut(s) | 133, 454, 586 |
| BspANI | GGCC | 1 cut(s) | 20 |
| BspCNI | CTCAG | 3 cut(s) | 360, 400, 1135 |
| BspHI | TCATGA | 4 cut(s) | 402, 913, 1350, 1374 |
| BspLI | GGNNCC | 2 cut(s) | 208, 280 |
| BspMI | ACCTGC | 1 cut(s) | 136 |
| BspPI | GGATC | 1 cut(s) | 986 |
| BspQI | GCTCTTC | 1 cut(s) | 135 |
| BspT104I | TTCGAA | 1 cut(s) | 153 |
| BspTI | CTTAAG | 1 cut(s) | 14 |
| BsrDI | GCAATG | 3 cut(s) | 465, 1017, 1228 |
| BsrI | ACTGG | 4 cut(s) | 497, 675, 713, 1050 |
| BssECI | CCNNGG | 4 cut(s) | 282, 838, 1063, 1240 |
| BssMI | GATC | 6 cut(s) | 354, 371, 936, 950, 978, 1413 |
| BssT1I | CCWWGG | 2 cut(s) | 282, 1063 |
| Bst2UI | CCWGG | 3 cut(s) | 211, 300, 1241 |
| Bst4CI | ACNGT | 5 cut(s) | 430, 853, 1423, 1447, 1454 |
| Bst6I | CTCTTC | 1 cut(s) | 135 |
| BstAFI | CTTAAG | 1 cut(s) | 14 |
| BstBI | TTCGAA | 1 cut(s) | 153 |
| BstC8I | GCNNGC | 5 cut(s) | 96, 133, 456, 714, 1346 |
| BstDEI | CTNAG | 5 cut(s) | 347, 408, 1143, 1169, 1206 |
| BstDSI | CCRYGG | 1 cut(s) | 1063 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1035 |
| BstF5I | GGATG | 2 cut(s) | 374, 1284 |
| BstKTI | GATC | 6 cut(s) | 357, 374, 939, 953, 981, 1416 |
| BstMBI | GATC | 6 cut(s) | 354, 371, 936, 950, 978, 1413 |
| BstMCI | CGRYCG | 1 cut(s) | 586 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 17, 460, 687, 783, 1007 |
| BstNI | CCWGG | 3 cut(s) | 211, 300, 1241 |
| BstNSI | RCATGY | 1 cut(s) | 1294 |
| BstSCI | CCNGG | 4 cut(s) | 209, 298, 837, 1239 |
| BstSFI | CTRYAG | 2 cut(s) | 225, 867 |
| BstSLI | GKGCMC | 2 cut(s) | 224, 1436 |
| BstV1I | GCAGC | 1 cut(s) | 475 |
| BstV2I | GAAGAC | 1 cut(s) | 1448 |
| BstX2I | RGATCY | 1 cut(s) | 978 |
| BstYI | RGATCY | 1 cut(s) | 978 |
| BsuI | GTATCC | 1 cut(s) | 541 |
| BsuRI | GGCC | 1 cut(s) | 20 |
| BtgI | CCRYGG | 1 cut(s) | 1063 |
| BtrI | CACGTC | 1 cut(s) | 67 |
| BtsCI | GGATG | 2 cut(s) | 374, 1284 |
| BtsIMutI | CAGTG | 3 cut(s) | 426, 682, 706 |
| BveI | ACCTGC | 1 cut(s) | 136 |
| Cac8I | GCNNGC | 5 cut(s) | 96, 133, 456, 714, 1346 |
| CciI | TCATGA | 4 cut(s) | 402, 913, 1350, 1374 |
| Csp6I | GTAC | 3 cut(s) | 1177, 1213, 1448 |
| CviAII | CATG | 8 cut(s) | 403, 667, 857, 914, 1064, 1291, 1351, 1375 |
| CviQI | GTAC | 3 cut(s) | 1177, 1213, 1448 |
| DdeI | CTNAG | 5 cut(s) | 347, 408, 1143, 1169, 1206 |
| DpnI | GATC | 6 cut(s) | 356, 373, 938, 952, 980, 1415 |
| DpnII | GATC | 6 cut(s) | 354, 371, 936, 950, 978, 1413 |
| Eam1104I | CTCTTC | 1 cut(s) | 135 |
| EarI | CTCTTC | 1 cut(s) | 135 |
| Ecl136II | GAGCTC | 1 cut(s) | 580 |
| Eco130I | CCWWGG | 2 cut(s) | 282, 1063 |
| Eco147I | AGGCCT | 1 cut(s) | 20 |
| Eco24I | GRGCYC | 1 cut(s) | 582 |
| Eco32I | GATATC | 1 cut(s) | 400 |
| Eco53kI | GAGCTC | 1 cut(s) | 580 |
| EcoICRI | GAGCTC | 1 cut(s) | 580 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1035 |
| EcoRII | CCWGG | 3 cut(s) | 209, 298, 1239 |
| EcoRV | GATATC | 1 cut(s) | 400 |
| EcoT14I | CCWWGG | 2 cut(s) | 282, 1063 |
| EcoT38I | GRGCYC | 1 cut(s) | 582 |
| ErhI | CCWWGG | 2 cut(s) | 282, 1063 |
| FaeI | CATG | 8 cut(s) | 406, 670, 860, 917, 1067, 1294, 1354, 1378 |
| FalI | AAGNNNNNCTT | 3 cut(s) | 29, 940, 972 |
| FatI | CATG | 8 cut(s) | 402, 666, 856, 913, 1063, 1290, 1350, 1374 |
| FauI | CCCGC | 2 cut(s) | 140, 447 |
| FbaI | TGATCA | 2 cut(s) | 936, 1413 |
| FblI | GTMKAC | 1 cut(s) | 119 |
| Fnu4HI | GCNGC | 1 cut(s) | 464 |
| FokI | GGATG | 2 cut(s) | 361, 1271 |
| FriOI | GRGCYC | 1 cut(s) | 582 |
| Fsp4HI | GCNGC | 1 cut(s) | 464 |
| FspBI | CTAG | 1 cut(s) | 162 |
| GluI | GCNGC | 1 cut(s) | 464 |
| GsaI | CCCAGC | 1 cut(s) | 268 |
| GsuI | CTGGAG | 2 cut(s) | 321, 1067 |
| HaeIII | GGCC | 1 cut(s) | 20 |
| HapII | CCGG | 1 cut(s) | 838 |
| Hin1II | CATG | 8 cut(s) | 406, 670, 860, 917, 1067, 1294, 1354, 1378 |
| HindIII | AAGCTT | 1 cut(s) | 419 |
| HinfI | GANTC | 6 cut(s) | 79, 116, 233, 324, 1261, 1378 |
| HpaII | CCGG | 1 cut(s) | 838 |
| HphI | GGTGA | 4 cut(s) | 424, 551, 571, 1118 |
| Hpy166II | GTNNAC | 7 cut(s) | 120, 222, 672, 754, 1043, 1165, 1450 |
| Hpy188I | TCNGA | 4 cut(s) | 801, 904, 964, 1144 |
| Hpy188III | TCNNGA | 9 cut(s) | 178, 292, 349, 403, 605, 914, 1315, 1351, 1375 |
| Hpy8I | GTNNAC | 7 cut(s) | 120, 222, 672, 754, 1043, 1165, 1450 |
| HpyAV | CCTTC | 3 cut(s) | 607, 788, 1103 |
| HpyCH4III | ACNGT | 5 cut(s) | 430, 853, 1423, 1447, 1454 |
| HpyCH4IV | ACGT | 2 cut(s) | 66, 1215 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 17, 460, 687, 783, 1007 |
| HpyF3I | CTNAG | 5 cut(s) | 347, 408, 1143, 1169, 1206 |
| HpySE526I | ACGT | 2 cut(s) | 66, 1215 |
| Hsp92II | CATG | 8 cut(s) | 406, 670, 860, 917, 1067, 1294, 1354, 1378 |
| Ksp22I | TGATCA | 2 cut(s) | 936, 1413 |
| Kzo9I | GATC | 6 cut(s) | 354, 371, 936, 950, 978, 1413 |
| LguI | GCTCTTC | 1 cut(s) | 135 |
| LmnI | GCTCC | 3 cut(s) | 8, 278, 577 |
| Lsp1109I | GCAGC | 1 cut(s) | 475 |
| LweI | GCATC | 2 cut(s) | 235, 887 |
| MaeI | CTAG | 1 cut(s) | 162 |
| MaeII | ACGT | 2 cut(s) | 66, 1215 |
| MaeIII | GTNAC | 1 cut(s) | 430 |
| MalI | GATC | 6 cut(s) | 356, 373, 938, 952, 980, 1415 |
| MboI | GATC | 6 cut(s) | 354, 371, 936, 950, 978, 1413 |
| MboII | GAAGA | 8 cut(s) | 152, 364, 381, 960, 1078, 1210, 1408, 1453 |
| MflI | RGATCY | 1 cut(s) | 978 |
| MhlI | GDGCHC | 6 cut(s) | 13, 224, 570, 582, 1151, 1436 |
| MluCI | AATT | 6 cut(s) | 87, 483, 747, 758, 803, 1320 |
| MlyI | GAGTC | 1 cut(s) | 125 |
| MmeI | TCCRAC | 1 cut(s) | 256 |
| MnlI | CCTC | 5 cut(s) | 403, 568, 666, 910, 1368 |
| MseI | TTAA | 4 cut(s) | 15, 252, 620, 761 |
| MslI | CAYNNNNRTG | 4 cut(s) | 69, 1010, 1127, 1289 |
| MspA1I | CMGCKG | 1 cut(s) | 466 |
| MspCI | CTTAAG | 1 cut(s) | 14 |
| MspI | CCGG | 1 cut(s) | 838 |
| MspR9I | CCNGG | 4 cut(s) | 211, 300, 839, 1241 |
| Mva1269I | GAATGC | 2 cut(s) | 522, 598 |
| MvaI | CCWGG | 3 cut(s) | 211, 300, 1241 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 17, 460, 687, 783, 1007 |
| NciI | CCSGG | 1 cut(s) | 839 |
| NcoI | CCATGG | 1 cut(s) | 1063 |
| NdeII | GATC | 6 cut(s) | 354, 371, 936, 950, 978, 1413 |
| NlaIII | CATG | 8 cut(s) | 406, 670, 860, 917, 1067, 1294, 1354, 1378 |
| NlaIV | GGNNCC | 2 cut(s) | 208, 280 |
| NmuCI | GTSAC | 1 cut(s) | 430 |
| NspI | RCATGY | 1 cut(s) | 1294 |
| NspV | TTCGAA | 1 cut(s) | 153 |
| OliI | CACNNNNGTG | 1 cut(s) | 69 |
| PagI | TCATGA | 4 cut(s) | 402, 913, 1350, 1374 |
| PaqCI | CACCTGC | 1 cut(s) | 136 |
| PceI | AGGCCT | 1 cut(s) | 20 |
| PciI | ACATGT | 1 cut(s) | 1290 |
| PciSI | GCTCTTC | 1 cut(s) | 135 |
| PctI | GAATGC | 2 cut(s) | 522, 598 |
| PfeI | GAWTC | 5 cut(s) | 79, 233, 324, 1261, 1378 |
| PkrI | GCNGC | 1 cut(s) | 465 |
| PleI | GAGTC | 1 cut(s) | 124 |
| PpsI | GAGTC | 1 cut(s) | 124 |
| PscI | ACATGT | 1 cut(s) | 1290 |
| Psp124BI | GAGCTC | 1 cut(s) | 582 |
| Psp6I | CCWGG | 3 cut(s) | 209, 298, 1239 |
| PspFI | CCCAGC | 1 cut(s) | 264 |
| PspGI | CCWGG | 3 cut(s) | 209, 298, 1239 |
| PspN4I | GGNNCC | 2 cut(s) | 208, 280 |
| PsuI | RGATCY | 1 cut(s) | 978 |
| PvuII | CAGCTG | 1 cut(s) | 466 |
| RsaI | GTAC | 3 cut(s) | 1178, 1214, 1449 |
| RsaNI | GTAC | 3 cut(s) | 1177, 1213, 1448 |
| RseI | CAYNNNNRTG | 4 cut(s) | 69, 1010, 1127, 1289 |
| SacI | GAGCTC | 1 cut(s) | 582 |
| SapI | GCTCTTC | 1 cut(s) | 135 |
| SaqAI | TTAA | 4 cut(s) | 15, 252, 620, 761 |
| SatI | GCNGC | 1 cut(s) | 464 |
| Sau3AI | GATC | 6 cut(s) | 354, 371, 936, 950, 978, 1413 |
| SchI | GAGTC | 1 cut(s) | 125 |
| ScrFI | CCNGG | 4 cut(s) | 211, 300, 839, 1241 |
| SduI | GDGCHC | 6 cut(s) | 13, 224, 570, 582, 1151, 1436 |
| SfaNI | GCATC | 2 cut(s) | 235, 887 |
| SfcI | CTRYAG | 2 cut(s) | 225, 867 |
| SfuI | TTCGAA | 1 cut(s) | 153 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 69, 1010, 1127, 1289 |
| SmlI | CTYRAG | 1 cut(s) | 14 |
| SmoI | CTYRAG | 1 cut(s) | 14 |
| Sse9I | AATT | 6 cut(s) | 87, 483, 747, 758, 803, 1320 |
| SseBI | AGGCCT | 1 cut(s) | 20 |
| SsiI | CCGC | 3 cut(s) | 133, 454, 586 |
| SspMI | CTAG | 1 cut(s) | 162 |
| SstI | GAGCTC | 1 cut(s) | 582 |
| StuI | AGGCCT | 1 cut(s) | 20 |
| StyD4I | CCNGG | 4 cut(s) | 209, 298, 837, 1239 |
| StyI | CCWWGG | 2 cut(s) | 282, 1063 |
| TaaI | ACNGT | 5 cut(s) | 430, 853, 1423, 1447, 1454 |
| TaiI | ACGT | 2 cut(s) | 69, 1218 |
| TaqI | TCGA | 3 cut(s) | 153, 257, 582 |
| TasI | AATT | 6 cut(s) | 87, 483, 747, 758, 803, 1320 |
| TfiI | GAWTC | 5 cut(s) | 79, 233, 324, 1261, 1378 |
| Tru1I | TTAA | 4 cut(s) | 15, 252, 620, 761 |
| Tru9I | TTAA | 4 cut(s) | 15, 252, 620, 761 |
| TscAI | CASTG | 3 cut(s) | 433, 682, 713 |
| TseFI | GTSAC | 1 cut(s) | 430 |
| TseI | GCWGC | 1 cut(s) | 463 |
| Tsp45I | GTSAC | 1 cut(s) | 430 |
| TspDTI | ATGAA | 9 cut(s) | 15, 655, 770, 845, 902, 1261, 1273, 1295, 1391 |
| TspGWI | ACGGA | 2 cut(s) | 59, 1317 |
| TspRI | CASTG | 3 cut(s) | 433, 682, 713 |
| Vha464I | CTTAAG | 1 cut(s) | 14 |
| VneI | GTGCAC | 1 cut(s) | 220 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1035 |
| XceI | RCATGY | 1 cut(s) | 1294 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 272, 541 |
| XmiI | GTMKAC | 1 cut(s) | 119 |
| XspI | CTAG | 1 cut(s) | 162 |