ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 603 |
| AccB1I | GGYRCC | 2 cut(s) | 335, 603 |
| AccIII | TCCGGA | 2 cut(s) | 220, 799 |
| AciI | CCGC | 3 cut(s) | 179, 274, 727 |
| AcsI | RAATTY | 1 cut(s) | 20 |
| AcuI | CTGAAG | 1 cut(s) | 60 |
| AcvI | CACGTG | 1 cut(s) | 710 |
| AcyI | GRCGYC | 1 cut(s) | 1082 |
| AfaI | GTAC | 4 cut(s) | 320, 432, 605, 916 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 249, 345, 409, 1042, 1123 |
| AflII | CTTAAG | 1 cut(s) | 905 |
| AflIII | ACRYGT | 1 cut(s) | 709 |
| AgsI | TTSAA | 4 cut(s) | 205, 304, 388, 748 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 967 |
| AluBI | AGCT | 2 cut(s) | 663, 1076 |
| AluI | AGCT | 2 cut(s) | 663, 1076 |
| Alw21I | GWGCWC | 1 cut(s) | 709 |
| Alw26I | GTCTC | 3 cut(s) | 38, 975, 978 |
| Alw44I | GTGCAC | 1 cut(s) | 705 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 351, 439 |
| Ama87I | CYCGRG | 1 cut(s) | 1094 |
| Aor13HI | TCCGGA | 2 cut(s) | 220, 799 |
| AoxI | GGCC | 2 cut(s) | 240, 1008 |
| ApaLI | GTGCAC | 1 cut(s) | 705 |
| ApeKI | GCWGC | 4 cut(s) | 367, 773, 886, 1073 |
| ApoI | RAATTY | 1 cut(s) | 20 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 713, 745 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 465 |
| Asp718I | GGTACC | 1 cut(s) | 603 |
| AspS9I | GGNCC | 4 cut(s) | 436, 508, 893, 1008 |
| AsuHPI | GGTGA | 3 cut(s) | 266, 341, 1138 |
| AvaI | CYCGRG | 1 cut(s) | 1094 |
| AvaII | GGWCC | 3 cut(s) | 436, 508, 893 |
| BaeGI | GKGCMC | 1 cut(s) | 709 |
| BanI | GGYRCC | 2 cut(s) | 335, 603 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 197, 229 |
| BbrPI | CACGTG | 1 cut(s) | 710 |
| BbsI | GAAGAC | 4 cut(s) | 527, 645, 1142, 1154 |
| Bbv12I | GWGCWC | 1 cut(s) | 709 |
| BbvI | GCAGC | 4 cut(s) | 354, 760, 873, 1085 |
| BccI | CCATC | 3 cut(s) | 153, 326, 421 |
| BciVI | GTATCC | 2 cut(s) | 217, 533 |
| BcoDI | GTCTC | 3 cut(s) | 38, 975, 978 |
| BfaI | CTAG | 3 cut(s) | 210, 519, 632 |
| BfmI | CTRYAG | 2 cut(s) | 546, 1071 |
| BfrI | CTTAAG | 1 cut(s) | 905 |
| BfuI | GTATCC | 2 cut(s) | 217, 533 |
| BisI | GCNGC | 4 cut(s) | 368, 774, 887, 1074 |
| BlpI | GCTNAGC | 1 cut(s) | 150 |
| BlsI | GCNGC | 4 cut(s) | 369, 775, 888, 1075 |
| Bme18I | GGWCC | 3 cut(s) | 436, 508, 893 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 967 |
| BmeT110I | CYCGRG | 1 cut(s) | 1094 |
| BmgT120I | GGNCC | 4 cut(s) | 436, 508, 893, 1008 |
| BmiI | GGNNCC | 2 cut(s) | 337, 605 |
| BpiI | GAAGAC | 4 cut(s) | 527, 645, 1142, 1154 |
| BpmI | CTGGAG | 1 cut(s) | 314 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 150 |
| BpuEI | CTTGAG | 1 cut(s) | 649 |
| BsaAI | YACGTR | 2 cut(s) | 638, 710 |
| BsaHI | GRCGYC | 1 cut(s) | 1082 |
| BsaJI | CCNNGG | 1 cut(s) | 362 |
| BsaWI | WCCGGW | 2 cut(s) | 220, 799 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 65, 95 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 249, 345, 409, 1042, 1123 |
| Bse1I | ACTGG | 1 cut(s) | 65 |
| BseAI | TCCGGA | 2 cut(s) | 220, 799 |
| BseDI | CCNNGG | 1 cut(s) | 362 |
| BseGI | GGATG | 3 cut(s) | 164, 808, 866 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 249, 345, 409, 1042, 1123 |
| BseMII | CTCAG | 1 cut(s) | 932 |
| BseNI | ACTGG | 1 cut(s) | 65 |
| BseRI | GAGGAG | 1 cut(s) | 425 |
| BseSI | GKGCMC | 1 cut(s) | 709 |
| BseXI | GCAGC | 4 cut(s) | 354, 760, 873, 1085 |
| BshFI | GGCC | 2 cut(s) | 242, 1010 |
| BshNI | GGYRCC | 2 cut(s) | 335, 603 |
| BsiHKAI | GWGCWC | 1 cut(s) | 709 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1094 |
| BsiSI | CCGG | 2 cut(s) | 221, 800 |
| BslFI | GGGAC | 1 cut(s) | 368 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 249, 345, 409, 1042, 1123 |
| BsmAI | GTCTC | 3 cut(s) | 38, 975, 978 |
| BsmFI | GGGAC | 1 cut(s) | 368 |
| BsnI | GGCC | 2 cut(s) | 242, 1010 |
| BsoBI | CYCGRG | 1 cut(s) | 1094 |
| Bsp1286I | GDGCHC | 1 cut(s) | 709 |
| Bsp13I | TCCGGA | 2 cut(s) | 220, 799 |
| Bsp143I | GATC | 2 cut(s) | 342, 477 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 150 |
| Bsp19I | CCATGG | 1 cut(s) | 362 |
| BspACI | CCGC | 3 cut(s) | 179, 274, 727 |
| BspANI | GGCC | 2 cut(s) | 242, 1010 |
| BspCNI | CTCAG | 1 cut(s) | 931 |
| BspEI | TCCGGA | 2 cut(s) | 220, 799 |
| BspHI | TCATGA | 1 cut(s) | 234 |
| BspLI | GGNNCC | 2 cut(s) | 337, 605 |
| BspMAI | CTGCAG | 1 cut(s) | 1075 |
| BspT107I | GGYRCC | 2 cut(s) | 335, 603 |
| BspTI | CTTAAG | 1 cut(s) | 905 |
| BsrI | ACTGG | 1 cut(s) | 65 |
| BssECI | CCNNGG | 1 cut(s) | 362 |
| BssMI | GATC | 2 cut(s) | 342, 477 |
| BssNI | GRCGYC | 1 cut(s) | 1082 |
| BssT1I | CCWWGG | 1 cut(s) | 362 |
| Bst4CI | ACNGT | 3 cut(s) | 318, 1005, 1126 |
| Bst6I | CTCTTC | 3 cut(s) | 36, 299, 447 |
| BstACI | GRCGYC | 1 cut(s) | 1082 |
| BstAFI | CTTAAG | 1 cut(s) | 905 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 187, 678 |
| BstBAI | YACGTR | 2 cut(s) | 638, 710 |
| BstC8I | GCNNGC | 2 cut(s) | 192, 683 |
| BstDEI | CTNAG | 4 cut(s) | 150, 832, 918, 978 |
| BstDSI | CCRYGG | 1 cut(s) | 362 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 343, 1040 |
| BstF5I | GGATG | 3 cut(s) | 164, 808, 866 |
| BstKTI | GATC | 2 cut(s) | 345, 480 |
| BstMAI | GTCTC | 3 cut(s) | 38, 975, 978 |
| BstMBI | GATC | 2 cut(s) | 342, 477 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 146, 187, 641, 669, 678, 1079 |
| BstNSI | RCATGY | 4 cut(s) | 681, 685, 847, 851 |
| BstSFI | CTRYAG | 2 cut(s) | 546, 1071 |
| BstSLI | GKGCMC | 1 cut(s) | 709 |
| BstV1I | GCAGC | 4 cut(s) | 354, 760, 873, 1085 |
| BstV2I | GAAGAC | 4 cut(s) | 527, 645, 1142, 1154 |
| BsuI | GTATCC | 2 cut(s) | 217, 533 |
| BsuRI | GGCC | 2 cut(s) | 242, 1010 |
| BtgI | CCRYGG | 1 cut(s) | 362 |
| BtsCI | GGATG | 3 cut(s) | 164, 808, 866 |
| BtsIMutI | CAGTG | 1 cut(s) | 58 |
| Cac8I | GCNNGC | 2 cut(s) | 192, 683 |
| CaiI | CAGNNNCTG | 2 cut(s) | 351, 439 |
| CciI | TCATGA | 1 cut(s) | 234 |
| Cfr13I | GGNCC | 4 cut(s) | 436, 508, 893, 1008 |
| CseI | GACGC | 1 cut(s) | 1071 |
| Csp6I | GTAC | 4 cut(s) | 319, 431, 604, 915 |
| CviQI | GTAC | 4 cut(s) | 319, 431, 604, 915 |
| DdeI | CTNAG | 4 cut(s) | 150, 832, 918, 978 |
| DpnI | GATC | 2 cut(s) | 344, 479 |
| DpnII | GATC | 2 cut(s) | 342, 477 |
| DriI | GACNNNNNGTC | 1 cut(s) | 967 |
| Eam1104I | CTCTTC | 3 cut(s) | 36, 299, 447 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 967 |
| EarI | CTCTTC | 3 cut(s) | 36, 299, 447 |
| EciI | GGCGGA | 1 cut(s) | 289 |
| Eco130I | CCWWGG | 1 cut(s) | 362 |
| Eco47I | GGWCC | 3 cut(s) | 436, 508, 893 |
| Eco57I | CTGAAG | 1 cut(s) | 60 |
| Eco72I | CACGTG | 1 cut(s) | 710 |
| Eco88I | CYCGRG | 1 cut(s) | 1094 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 343, 1040 |
| EcoO109I | RGGNCCY | 1 cut(s) | 436 |
| EcoT14I | CCWWGG | 1 cut(s) | 362 |
| EcoT22I | ATGCAT | 4 cut(s) | 6, 683, 849, 960 |
| ErhI | CCWWGG | 1 cut(s) | 362 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 296, 328, 971, 1003 |
| FaqI | GGGAC | 1 cut(s) | 368 |
| FauI | CCCGC | 1 cut(s) | 186 |
| Fnu4HI | GCNGC | 4 cut(s) | 368, 774, 887, 1074 |
| FokI | GGATG | 3 cut(s) | 171, 815, 873 |
| Fsp4HI | GCNGC | 4 cut(s) | 368, 774, 887, 1074 |
| FspBI | CTAG | 3 cut(s) | 210, 519, 632 |
| GluI | GCNGC | 4 cut(s) | 368, 774, 887, 1074 |
| GsuI | CTGGAG | 1 cut(s) | 314 |
| HaeIII | GGCC | 2 cut(s) | 242, 1010 |
| HapII | CCGG | 2 cut(s) | 221, 800 |
| HgaI | GACGC | 1 cut(s) | 1071 |
| Hin1I | GRCGYC | 1 cut(s) | 1082 |
| HinfI | GANTC | 3 cut(s) | 55, 532, 962 |
| HpaII | CCGG | 2 cut(s) | 221, 800 |
| HphI | GGTGA | 3 cut(s) | 266, 341, 1138 |
| Hpy166II | GTNNAC | 3 cut(s) | 508, 707, 877 |
| Hpy188I | TCNGA | 5 cut(s) | 97, 426, 720, 809, 921 |
| Hpy188III | TCNNGA | 5 cut(s) | 221, 235, 657, 666, 800 |
| Hpy8I | GTNNAC | 3 cut(s) | 508, 707, 877 |
| HpyAV | CCTTC | 7 cut(s) | 199, 232, 451, 685, 715, 763, 1036 |
| HpyCH4III | ACNGT | 3 cut(s) | 318, 1005, 1126 |
| HpyCH4IV | ACGT | 3 cut(s) | 637, 650, 709 |
| HpyCH4V | TGCA | 9 cut(s) | 4, 124, 681, 707, 847, 889, 958, 1073, 1114 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 146, 187, 641, 669, 678, 1079 |
| HpyF3I | CTNAG | 4 cut(s) | 150, 832, 918, 978 |
| HpySE526I | ACGT | 3 cut(s) | 637, 650, 709 |
| Hsp92I | GRCGYC | 1 cut(s) | 1082 |
| Kpn2I | TCCGGA | 2 cut(s) | 220, 799 |
| KpnI | GGTACC | 1 cut(s) | 607 |
| Kzo9I | GATC | 2 cut(s) | 342, 477 |
| LmnI | GCTCC | 1 cut(s) | 276 |
| Lsp1109I | GCAGC | 4 cut(s) | 354, 760, 873, 1085 |
| MaeI | CTAG | 3 cut(s) | 210, 519, 632 |
| MaeII | ACGT | 3 cut(s) | 637, 650, 709 |
| MaeIII | GTNAC | 1 cut(s) | 999 |
| MalI | GATC | 2 cut(s) | 344, 479 |
| MboI | GATC | 2 cut(s) | 342, 477 |
| MhlI | GDGCHC | 1 cut(s) | 709 |
| MluCI | AATT | 5 cut(s) | 20, 382, 485, 759, 795 |
| MlyI | GAGTC | 2 cut(s) | 541, 956 |
| Mph1103I | ATGCAT | 4 cut(s) | 6, 683, 849, 960 |
| MroI | TCCGGA | 2 cut(s) | 220, 799 |
| MroXI | GAANNNNTTC | 1 cut(s) | 465 |
| MseI | TTAA | 5 cut(s) | 11, 132, 783, 906, 1065 |
| MslI | CAYNNNNRTG | 1 cut(s) | 848 |
| MspCI | CTTAAG | 1 cut(s) | 905 |
| MspI | CCGG | 2 cut(s) | 221, 800 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 146, 187, 641, 669, 678, 1079 |
| NcoI | CCATGG | 1 cut(s) | 362 |
| NdeII | GATC | 2 cut(s) | 342, 477 |
| NlaIV | GGNNCC | 2 cut(s) | 337, 605 |
| NsiI | ATGCAT | 4 cut(s) | 6, 683, 849, 960 |
| NspI | RCATGY | 4 cut(s) | 681, 685, 847, 851 |
| PaeI | GCATGC | 1 cut(s) | 685 |
| PaeR7I | CTCGAG | 1 cut(s) | 1094 |
| PagI | TCATGA | 1 cut(s) | 234 |
| PdmI | GAANNNNTTC | 1 cut(s) | 465 |
| PfeI | GAWTC | 1 cut(s) | 55 |
| PkrI | GCNGC | 4 cut(s) | 369, 775, 888, 1075 |
| PleI | GAGTC | 2 cut(s) | 540, 956 |
| PmaCI | CACGTG | 1 cut(s) | 710 |
| PmlI | CACGTG | 1 cut(s) | 710 |
| PpsI | GAGTC | 2 cut(s) | 540, 956 |
| Ppu21I | YACGTR | 2 cut(s) | 638, 710 |
| PpuMI | RGGWCCY | 1 cut(s) | 436 |
| Psp5II | RGGWCCY | 1 cut(s) | 436 |
| PspCI | CACGTG | 1 cut(s) | 710 |
| PspN4I | GGNNCC | 2 cut(s) | 337, 605 |
| PspPI | GGNCC | 4 cut(s) | 436, 508, 893, 1008 |
| PspPPI | RGGWCCY | 1 cut(s) | 436 |
| PspXI | VCTCGAGB | 1 cut(s) | 1094 |
| PstI | CTGCAG | 1 cut(s) | 1075 |
| PstNI | CAGNNNCTG | 2 cut(s) | 351, 439 |
| RsaI | GTAC | 4 cut(s) | 320, 432, 605, 916 |
| RsaNI | GTAC | 4 cut(s) | 319, 431, 604, 915 |
| RseI | CAYNNNNRTG | 1 cut(s) | 848 |
| SaqAI | TTAA | 5 cut(s) | 11, 132, 783, 906, 1065 |
| SatI | GCNGC | 4 cut(s) | 368, 774, 887, 1074 |
| Sau3AI | GATC | 2 cut(s) | 342, 477 |
| Sau96I | GGNCC | 4 cut(s) | 436, 508, 893, 1008 |
| SchI | GAGTC | 2 cut(s) | 541, 956 |
| SduI | GDGCHC | 1 cut(s) | 709 |
| SfcI | CTRYAG | 2 cut(s) | 546, 1071 |
| Sfr274I | CTCGAG | 1 cut(s) | 1094 |
| SinI | GGWCC | 3 cut(s) | 436, 508, 893 |
| SlaI | CTCGAG | 1 cut(s) | 1094 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 848 |
| SmlI | CTYRAG | 3 cut(s) | 664, 905, 1094 |
| SmoI | CTYRAG | 3 cut(s) | 664, 905, 1094 |
| SphI | GCATGC | 1 cut(s) | 685 |
| Sse9I | AATT | 5 cut(s) | 20, 382, 485, 759, 795 |
| SsiI | CCGC | 3 cut(s) | 179, 274, 727 |
| SspMI | CTAG | 3 cut(s) | 210, 519, 632 |
| StyI | CCWWGG | 1 cut(s) | 362 |
| TaaI | ACNGT | 3 cut(s) | 318, 1005, 1126 |
| TaiI | ACGT | 3 cut(s) | 640, 653, 712 |
| TaqI | TCGA | 6 cut(s) | 196, 341, 480, 616, 1020, 1095 |
| TasI | AATT | 5 cut(s) | 20, 382, 485, 759, 795 |
| TatI | WGTACW | 1 cut(s) | 914 |
| TfiI | GAWTC | 1 cut(s) | 55 |
| Tru1I | TTAA | 5 cut(s) | 11, 132, 783, 906, 1065 |
| Tru9I | TTAA | 5 cut(s) | 11, 132, 783, 906, 1065 |
| TscAI | CASTG | 1 cut(s) | 65 |
| TseI | GCWGC | 4 cut(s) | 367, 773, 886, 1073 |
| TspDTI | ATGAA | 4 cut(s) | 223, 251, 465, 943 |
| TspGWI | ACGGA | 1 cut(s) | 242 |
| TspRI | CASTG | 1 cut(s) | 65 |
| Vha464I | CTTAAG | 1 cut(s) | 905 |
| VneI | GTGCAC | 1 cut(s) | 705 |
| VpaK11BI | GGWCC | 3 cut(s) | 436, 508, 893 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 343, 1040 |
| XapI | RAATTY | 1 cut(s) | 20 |
| XceI | RCATGY | 4 cut(s) | 681, 685, 847, 851 |
| XhoI | CTCGAG | 1 cut(s) | 1094 |
| XmnI | GAANNNNTTC | 1 cut(s) | 465 |
| XspI | CTAG | 3 cut(s) | 210, 519, 632 |
| Zsp2I | ATGCAT | 4 cut(s) | 6, 683, 849, 960 |