ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 587 |
| AciI | CCGC | 2 cut(s) | 206, 1055 |
| AclWI | GGATC | 3 cut(s) | 538, 551, 1011 |
| AcsI | RAATTY | 1 cut(s) | 390 |
| AcyI | GRCGYC | 2 cut(s) | 709, 1058 |
| AfaI | GTAC | 4 cut(s) | 45, 289, 757, 1075 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 587, 808, 1000 |
| AgsI | TTSAA | 2 cut(s) | 387, 745 |
| AjnI | CCWGG | 1 cut(s) | 851 |
| AluBI | AGCT | 5 cut(s) | 29, 136, 182, 218, 419 |
| AluI | AGCT | 5 cut(s) | 29, 136, 182, 218, 419 |
| Alw21I | GWGCWC | 1 cut(s) | 989 |
| Alw26I | GTCTC | 1 cut(s) | 610 |
| AlwI | GGATC | 3 cut(s) | 538, 551, 1011 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 490 |
| AoxI | GGCC | 2 cut(s) | 891, 940 |
| ApeKI | GCWGC | 1 cut(s) | 656 |
| ApoI | RAATTY | 1 cut(s) | 390 |
| AspA2I | CCTAGG | 1 cut(s) | 802 |
| AspS9I | GGNCC | 3 cut(s) | 428, 892, 940 |
| AsuHPI | GGTGA | 4 cut(s) | 281, 660, 977, 1059 |
| AvaII | GGWCC | 1 cut(s) | 428 |
| AvrII | CCTAGG | 1 cut(s) | 802 |
| BamHI | GGATCC | 1 cut(s) | 543 |
| BanII | GRGCYC | 1 cut(s) | 595 |
| Bbv12I | GWGCWC | 1 cut(s) | 989 |
| BbvI | GCAGC | 1 cut(s) | 668 |
| BccI | CCATC | 4 cut(s) | 395, 489, 503, 964 |
| BciT130I | CCWGG | 1 cut(s) | 853 |
| BciVI | GTATCC | 2 cut(s) | 466, 567 |
| BclI | TGATCA | 1 cut(s) | 64 |
| BcoDI | GTCTC | 1 cut(s) | 610 |
| BfaI | CTAG | 2 cut(s) | 803, 1071 |
| BfmI | CTRYAG | 2 cut(s) | 465, 672 |
| BfuI | GTATCC | 2 cut(s) | 466, 567 |
| BisI | GCNGC | 2 cut(s) | 657, 1056 |
| BlnI | CCTAGG | 1 cut(s) | 802 |
| BlsI | GCNGC | 2 cut(s) | 658, 1057 |
| BmcAI | AGTACT | 1 cut(s) | 1075 |
| Bme1390I | CCNGG | 1 cut(s) | 853 |
| Bme18I | GGWCC | 1 cut(s) | 428 |
| BmgT120I | GGNCC | 3 cut(s) | 428, 892, 940 |
| BmiI | GGNNCC | 3 cut(s) | 429, 545, 594 |
| BmrFI | CCNGG | 1 cut(s) | 853 |
| BmrI | ACTGGG | 2 cut(s) | 300, 713 |
| BmsI | GCATC | 2 cut(s) | 422, 554 |
| BmuI | ACTGGG | 2 cut(s) | 300, 713 |
| BpmI | CTGGAG | 2 cut(s) | 118, 198 |
| Bpu10I | CCTNAGC | 1 cut(s) | 363 |
| BpuEI | CTTGAG | 1 cut(s) | 198 |
| BsaAI | YACGTR | 1 cut(s) | 961 |
| BsaBI | GATNNNNATC | 1 cut(s) | 555 |
| BsaHI | GRCGYC | 2 cut(s) | 709, 1058 |
| BsaJI | CCNNGG | 2 cut(s) | 802, 851 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 587, 808, 1000 |
| Bse118I | RCCGGY | 1 cut(s) | 253 |
| Bse1I | ACTGG | 4 cut(s) | 181, 295, 653, 708 |
| Bse8I | GATNNNNATC | 1 cut(s) | 555 |
| BseBI | CCWGG | 1 cut(s) | 853 |
| BseDI | CCNNGG | 2 cut(s) | 802, 851 |
| BseJI | GATNNNNATC | 1 cut(s) | 555 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 587, 808, 1000 |
| BseMII | CTCAG | 2 cut(s) | 482, 935 |
| BseNI | ACTGG | 4 cut(s) | 181, 295, 653, 708 |
| BseRI | GAGGAG | 1 cut(s) | 329 |
| BseXI | GCAGC | 1 cut(s) | 668 |
| Bsh1285I | CGRYCG | 1 cut(s) | 258 |
| BshFI | GGCC | 2 cut(s) | 893, 942 |
| BsiEI | CGRYCG | 1 cut(s) | 258 |
| BsiHKAI | GWGCWC | 1 cut(s) | 989 |
| BsiSI | CCGG | 1 cut(s) | 254 |
| BslFI | GGGAC | 2 cut(s) | 419, 720 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 587, 808, 1000 |
| BsmAI | GTCTC | 1 cut(s) | 610 |
| BsmBI | CGTCTC | 1 cut(s) | 610 |
| BsmFI | GGGAC | 2 cut(s) | 419, 720 |
| BsmI | GAATGC | 1 cut(s) | 357 |
| BsnI | GGCC | 2 cut(s) | 893, 942 |
| Bsp1286I | GDGCHC | 2 cut(s) | 595, 989 |
| Bsp143I | GATC | 6 cut(s) | 64, 543, 615, 724, 835, 1003 |
| BspACI | CCGC | 2 cut(s) | 206, 1055 |
| BspANI | GGCC | 2 cut(s) | 893, 942 |
| BspCNI | CTCAG | 2 cut(s) | 483, 936 |
| BspHI | TCATGA | 2 cut(s) | 234, 898 |
| BspLI | GGNNCC | 3 cut(s) | 429, 545, 594 |
| BspMAI | CTGCAG | 1 cut(s) | 469 |
| BspPI | GGATC | 3 cut(s) | 538, 551, 1011 |
| BsrFI | RCCGGY | 1 cut(s) | 253 |
| BsrI | ACTGG | 4 cut(s) | 181, 295, 653, 708 |
| BssAI | RCCGGY | 1 cut(s) | 253 |
| BssECI | CCNNGG | 2 cut(s) | 802, 851 |
| BssMI | GATC | 6 cut(s) | 64, 543, 615, 724, 835, 1003 |
| BssNI | GRCGYC | 2 cut(s) | 709, 1058 |
| BssT1I | CCWWGG | 1 cut(s) | 802 |
| Bst2UI | CCWGG | 1 cut(s) | 853 |
| Bst4CI | ACNGT | 2 cut(s) | 109, 773 |
| BstACI | GRCGYC | 2 cut(s) | 709, 1058 |
| BstBAI | YACGTR | 1 cut(s) | 961 |
| BstDEI | CTNAG | 3 cut(s) | 363, 491, 944 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 806 |
| BstKTI | GATC | 6 cut(s) | 67, 546, 618, 727, 838, 1006 |
| BstMAI | GTCTC | 1 cut(s) | 610 |
| BstMBI | GATC | 6 cut(s) | 64, 543, 615, 724, 835, 1003 |
| BstMCI | CGRYCG | 1 cut(s) | 258 |
| BstNI | CCWGG | 1 cut(s) | 853 |
| BstSCI | CCNGG | 1 cut(s) | 851 |
| BstSFI | CTRYAG | 2 cut(s) | 465, 672 |
| BstV1I | GCAGC | 1 cut(s) | 668 |
| BstX2I | RGATCY | 2 cut(s) | 543, 1003 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 148 |
| BstYI | RGATCY | 2 cut(s) | 543, 1003 |
| BsuI | GTATCC | 2 cut(s) | 466, 567 |
| BsuRI | GGCC | 2 cut(s) | 893, 942 |
| BtsIMutI | CAGTG | 4 cut(s) | 396, 701, 778, 827 |
| CaiI | CAGNNNCTG | 1 cut(s) | 490 |
| CciI | TCATGA | 2 cut(s) | 234, 898 |
| Cfr10I | RCCGGY | 1 cut(s) | 253 |
| Cfr13I | GGNCC | 3 cut(s) | 428, 892, 940 |
| CseI | GACGC | 2 cut(s) | 717, 1047 |
| Csp6I | GTAC | 4 cut(s) | 44, 288, 756, 1074 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1028, 1063 |
| CviAII | CATG | 4 cut(s) | 62, 235, 899, 1079 |
| CviQI | GTAC | 4 cut(s) | 44, 288, 756, 1074 |
| DdeI | CTNAG | 3 cut(s) | 363, 491, 944 |
| DpnI | GATC | 6 cut(s) | 66, 545, 617, 726, 837, 1005 |
| DpnII | GATC | 6 cut(s) | 64, 543, 615, 724, 835, 1003 |
| DraI | TTTAAA | 1 cut(s) | 126 |
| Eco130I | CCWWGG | 1 cut(s) | 802 |
| Eco24I | GRGCYC | 1 cut(s) | 595 |
| Eco47I | GGWCC | 1 cut(s) | 428 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 806 |
| EcoO109I | RGGNCCY | 1 cut(s) | 940 |
| EcoRII | CCWGG | 1 cut(s) | 851 |
| EcoT14I | CCWWGG | 1 cut(s) | 802 |
| EcoT22I | ATGCAT | 1 cut(s) | 359 |
| EcoT38I | GRGCYC | 1 cut(s) | 595 |
| ErhI | CCWWGG | 1 cut(s) | 802 |
| Esp3I | CGTCTC | 1 cut(s) | 610 |
| FaeI | CATG | 4 cut(s) | 65, 238, 902, 1082 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 879, 911 |
| FaqI | GGGAC | 2 cut(s) | 419, 720 |
| FatI | CATG | 4 cut(s) | 61, 234, 898, 1078 |
| FbaI | TGATCA | 1 cut(s) | 64 |
| Fnu4HI | GCNGC | 2 cut(s) | 657, 1056 |
| FriOI | GRGCYC | 1 cut(s) | 595 |
| Fsp4HI | GCNGC | 2 cut(s) | 657, 1056 |
| FspBI | CTAG | 2 cut(s) | 803, 1071 |
| GluI | GCNGC | 2 cut(s) | 657, 1056 |
| GsuI | CTGGAG | 2 cut(s) | 118, 198 |
| HaeIII | GGCC | 2 cut(s) | 893, 942 |
| HapII | CCGG | 1 cut(s) | 254 |
| HgaI | GACGC | 2 cut(s) | 717, 1047 |
| Hin1I | GRCGYC | 2 cut(s) | 709, 1058 |
| Hin1II | CATG | 4 cut(s) | 65, 238, 902, 1082 |
| HincII | GTYRAC | 1 cut(s) | 848 |
| HindII | GTYRAC | 1 cut(s) | 848 |
| HinfI | GANTC | 4 cut(s) | 328, 729, 946, 1083 |
| HpaII | CCGG | 1 cut(s) | 254 |
| HphI | GGTGA | 4 cut(s) | 281, 660, 977, 1059 |
| Hpy166II | GTNNAC | 1 cut(s) | 848 |
| Hpy188I | TCNGA | 4 cut(s) | 492, 610, 721, 951 |
| Hpy188III | TCNNGA | 3 cut(s) | 235, 387, 899 |
| Hpy8I | GTNNAC | 1 cut(s) | 848 |
| Hpy99I | CGWCG | 1 cut(s) | 1063 |
| HpyAV | CCTTC | 5 cut(s) | 447, 579, 850, 905, 946 |
| HpyCH4III | ACNGT | 2 cut(s) | 109, 773 |
| HpyCH4IV | ACGT | 1 cut(s) | 960 |
| HpyCH4V | TGCA | 8 cut(s) | 22, 357, 396, 413, 467, 739, 1012, 1037 |
| HpyF3I | CTNAG | 3 cut(s) | 363, 491, 944 |
| HpySE526I | ACGT | 1 cut(s) | 960 |
| Hsp92I | GRCGYC | 2 cut(s) | 709, 1058 |
| Hsp92II | CATG | 4 cut(s) | 65, 238, 902, 1082 |
| Ksp22I | TGATCA | 1 cut(s) | 64 |
| Kzo9I | GATC | 6 cut(s) | 64, 543, 615, 724, 835, 1003 |
| LmnI | GCTCC | 3 cut(s) | 179, 598, 992 |
| Lsp1109I | GCAGC | 1 cut(s) | 668 |
| LweI | GCATC | 2 cut(s) | 422, 554 |
| MaeI | CTAG | 2 cut(s) | 803, 1071 |
| MaeII | ACGT | 1 cut(s) | 960 |
| MaeIII | GTNAC | 2 cut(s) | 956, 1065 |
| MalI | GATC | 6 cut(s) | 66, 545, 617, 726, 837, 1005 |
| MboI | GATC | 6 cut(s) | 64, 543, 615, 724, 835, 1003 |
| MboII | GAAGA | 2 cut(s) | 331, 564 |
| MfeI | CAATTG | 1 cut(s) | 422 |
| MflI | RGATCY | 2 cut(s) | 543, 1003 |
| MhlI | GDGCHC | 2 cut(s) | 595, 989 |
| MluCI | AATT | 6 cut(s) | 146, 390, 422, 519, 611, 1030 |
| MlyI | GAGTC | 3 cut(s) | 723, 955, 1092 |
| MmeI | TCCRAC | 5 cut(s) | 137, 304, 455, 617, 929 |
| Mph1103I | ATGCAT | 1 cut(s) | 359 |
| MseI | TTAA | 6 cut(s) | 125, 201, 275, 686, 1089, 1095 |
| MslI | CAYNNNNRTG | 1 cut(s) | 445 |
| MspI | CCGG | 1 cut(s) | 254 |
| MspR9I | CCNGG | 1 cut(s) | 853 |
| MunI | CAATTG | 1 cut(s) | 422 |
| Mva1269I | GAATGC | 1 cut(s) | 357 |
| MvaI | CCWGG | 1 cut(s) | 853 |
| NdeII | GATC | 6 cut(s) | 64, 543, 615, 724, 835, 1003 |
| NlaIII | CATG | 4 cut(s) | 65, 238, 902, 1082 |
| NlaIV | GGNNCC | 3 cut(s) | 429, 545, 594 |
| NmeAIII | GCCGAG | 1 cut(s) | 737 |
| NmuCI | GTSAC | 1 cut(s) | 1065 |
| NsiI | ATGCAT | 1 cut(s) | 359 |
| PagI | TCATGA | 2 cut(s) | 234, 898 |
| PctI | GAATGC | 1 cut(s) | 357 |
| PfeI | GAWTC | 1 cut(s) | 328 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 587 |
| PkrI | GCNGC | 2 cut(s) | 658, 1057 |
| PleI | GAGTC | 3 cut(s) | 723, 954, 1091 |
| PpsI | GAGTC | 3 cut(s) | 723, 954, 1091 |
| Ppu21I | YACGTR | 1 cut(s) | 961 |
| Psp6I | CCWGG | 1 cut(s) | 851 |
| PspGI | CCWGG | 1 cut(s) | 851 |
| PspN4I | GGNNCC | 3 cut(s) | 429, 545, 594 |
| PspPI | GGNCC | 3 cut(s) | 428, 892, 940 |
| PstI | CTGCAG | 1 cut(s) | 469 |
| PstNI | CAGNNNCTG | 1 cut(s) | 490 |
| PsuI | RGATCY | 2 cut(s) | 543, 1003 |
| RsaI | GTAC | 4 cut(s) | 45, 289, 757, 1075 |
| RsaNI | GTAC | 4 cut(s) | 44, 288, 756, 1074 |
| RseI | CAYNNNNRTG | 1 cut(s) | 445 |
| SaqAI | TTAA | 6 cut(s) | 125, 201, 275, 686, 1089, 1095 |
| SatI | GCNGC | 2 cut(s) | 657, 1056 |
| Sau3AI | GATC | 6 cut(s) | 64, 543, 615, 724, 835, 1003 |
| Sau96I | GGNCC | 3 cut(s) | 428, 892, 940 |
| ScaI | AGTACT | 1 cut(s) | 1075 |
| SchI | GAGTC | 3 cut(s) | 723, 955, 1092 |
| ScrFI | CCNGG | 1 cut(s) | 853 |
| SduI | GDGCHC | 2 cut(s) | 595, 989 |
| SfaNI | GCATC | 2 cut(s) | 422, 554 |
| SfcI | CTRYAG | 2 cut(s) | 465, 672 |
| SinI | GGWCC | 1 cut(s) | 428 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 445 |
| SmlI | CTYRAG | 1 cut(s) | 213 |
| SmoI | CTYRAG | 1 cut(s) | 213 |
| Sse9I | AATT | 6 cut(s) | 146, 390, 422, 519, 611, 1030 |
| SsiI | CCGC | 2 cut(s) | 206, 1055 |
| SspMI | CTAG | 2 cut(s) | 803, 1071 |
| StyD4I | CCNGG | 1 cut(s) | 851 |
| StyI | CCWWGG | 1 cut(s) | 802 |
| TaaI | ACNGT | 2 cut(s) | 109, 773 |
| TaiI | ACGT | 1 cut(s) | 963 |
| TaqI | TCGA | 2 cut(s) | 618, 727 |
| TasI | AATT | 6 cut(s) | 146, 390, 422, 519, 611, 1030 |
| TatI | WGTACW | 3 cut(s) | 43, 287, 1073 |
| TauI | GCSGC | 1 cut(s) | 1058 |
| TfiI | GAWTC | 1 cut(s) | 328 |
| Tru1I | TTAA | 6 cut(s) | 125, 201, 275, 686, 1089, 1095 |
| Tru9I | TTAA | 6 cut(s) | 125, 201, 275, 686, 1089, 1095 |
| TscAI | CASTG | 4 cut(s) | 403, 708, 778, 834 |
| TseFI | GTSAC | 1 cut(s) | 1065 |
| TseI | GCWGC | 1 cut(s) | 656 |
| Tsp45I | GTSAC | 1 cut(s) | 1065 |
| TspDTI | ATGAA | 6 cut(s) | 251, 320, 429, 887, 915, 1013 |
| TspGWI | ACGGA | 1 cut(s) | 326 |
| TspRI | CASTG | 4 cut(s) | 403, 708, 778, 834 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 587 |
| VpaK11BI | GGWCC | 1 cut(s) | 428 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 806 |
| XapI | RAATTY | 1 cut(s) | 390 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 287 |
| XmaJI | CCTAGG | 1 cut(s) | 802 |
| XspI | CTAG | 2 cut(s) | 803, 1071 |
| ZrmI | AGTACT | 1 cut(s) | 1075 |
| Zsp2I | ATGCAT | 1 cut(s) | 359 |