Polygalacturonase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 36 - 134 | 3.8e-10 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclI | AACGTT | 1 cut(s) | 256 |
| AcuI | CTGAAG | 1 cut(s) | 204 |
| AfaI | GTAC | 2 cut(s) | 148, 342 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 89 |
| AgsI | TTSAA | 5 cut(s) | 14, 184, 262, 280, 302 |
| AluBI | AGCT | 3 cut(s) | 29, 120, 218 |
| AluI | AGCT | 3 cut(s) | 29, 120, 218 |
| Alw26I | GTCTC | 2 cut(s) | 159, 211 |
| ApeKI | GCWGC | 1 cut(s) | 188 |
| AsuHPI | GGTGA | 1 cut(s) | 280 |
| BanII | GRGCYC | 1 cut(s) | 350 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 357, 389 |
| BbvI | GCAGC | 1 cut(s) | 200 |
| BcoDI | GTCTC | 2 cut(s) | 159, 211 |
| BfmI | CTRYAG | 1 cut(s) | 210 |
| BisI | GCNGC | 1 cut(s) | 189 |
| BlsI | GCNGC | 1 cut(s) | 190 |
| BmrI | ACTGGG | 1 cut(s) | 159 |
| BmsI | GCATC | 1 cut(s) | 379 |
| BmuI | ACTGGG | 1 cut(s) | 159 |
| Bpu10I | CCTNAGC | 1 cut(s) | 30 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 89 |
| Bse1I | ACTGG | 3 cut(s) | 94, 154, 270 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 89 |
| BseMII | CTCAG | 1 cut(s) | 44 |
| BseNI | ACTGG | 3 cut(s) | 94, 154, 270 |
| BseXI | GCAGC | 1 cut(s) | 200 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 89 |
| BsmAI | GTCTC | 2 cut(s) | 159, 211 |
| BsmBI | CGTCTC | 1 cut(s) | 159 |
| BsmI | GAATGC | 1 cut(s) | 23 |
| Bsp1286I | GDGCHC | 1 cut(s) | 350 |
| Bsp1407I | TGTACA | 1 cut(s) | 340 |
| Bsp143I | GATC | 1 cut(s) | 169 |
| BspCNI | CTCAG | 1 cut(s) | 43 |
| BsrGI | TGTACA | 1 cut(s) | 340 |
| BsrI | ACTGG | 3 cut(s) | 94, 154, 270 |
| BssMI | GATC | 1 cut(s) | 169 |
| Bst4CI | ACNGT | 1 cut(s) | 214 |
| Bst6I | CTCTTC | 1 cut(s) | 133 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 194 |
| BstAUI | TGTACA | 1 cut(s) | 340 |
| BstDEI | CTNAG | 1 cut(s) | 30 |
| BstKTI | GATC | 1 cut(s) | 172 |
| BstMAI | GTCTC | 2 cut(s) | 159, 211 |
| BstMBI | GATC | 1 cut(s) | 169 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 194 |
| BstNSI | RCATGY | 1 cut(s) | 330 |
| BstSFI | CTRYAG | 1 cut(s) | 210 |
| BstV1I | GCAGC | 1 cut(s) | 200 |
| Csp6I | GTAC | 2 cut(s) | 147, 341 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 213, 248 |
| CviAII | CATG | 5 cut(s) | 6, 140, 327, 377, 394 |
| CviJI | RGCY | 9 cut(s) | 10, 29, 79, 120, 191, 218, 320, 348, 361 |
| CviKI_1 | RGCY | 9 cut(s) | 10, 29, 79, 120, 191, 218, 320, 348, 361 |
| CviQI | GTAC | 2 cut(s) | 147, 341 |
| DdeI | CTNAG | 1 cut(s) | 30 |
| DpnI | GATC | 1 cut(s) | 171 |
| DpnII | GATC | 1 cut(s) | 169 |
| Eam1104I | CTCTTC | 1 cut(s) | 133 |
| EarI | CTCTTC | 1 cut(s) | 133 |
| Eco24I | GRGCYC | 1 cut(s) | 350 |
| Eco57I | CTGAAG | 1 cut(s) | 204 |
| EcoT38I | GRGCYC | 1 cut(s) | 350 |
| Esp3I | CGTCTC | 1 cut(s) | 159 |
| FaeI | CATG | 5 cut(s) | 9, 143, 330, 380, 397 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 176, 208 |
| FatI | CATG | 5 cut(s) | 5, 139, 326, 376, 393 |
| FauNDI | CATATG | 1 cut(s) | 352 |
| Fnu4HI | GCNGC | 1 cut(s) | 189 |
| FriOI | GRGCYC | 1 cut(s) | 350 |
| Fsp4HI | GCNGC | 1 cut(s) | 189 |
| GluI | GCNGC | 1 cut(s) | 189 |
| Hin1II | CATG | 5 cut(s) | 9, 143, 330, 380, 397 |
| HinfI | GANTC | 1 cut(s) | 369 |
| HphI | GGTGA | 1 cut(s) | 280 |
| Hpy188I | TCNGA | 1 cut(s) | 337 |
| Hpy188III | TCNNGA | 1 cut(s) | 67 |
| HpyAV | CCTTC | 1 cut(s) | 359 |
| HpyCH4III | ACNGT | 1 cut(s) | 214 |
| HpyCH4IV | ACGT | 1 cut(s) | 256 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 194 |
| HpyF3I | CTNAG | 1 cut(s) | 30 |
| HpySE526I | ACGT | 1 cut(s) | 256 |
| Hsp92II | CATG | 5 cut(s) | 9, 143, 330, 380, 397 |
| Kzo9I | GATC | 1 cut(s) | 169 |
| LpnPI | CCDG | 8 cut(s) | 17, 75, 96, 135, 216, 251, 329, 347 |
| Lsp1109I | GCAGC | 1 cut(s) | 200 |
| LweI | GCATC | 1 cut(s) | 379 |
| MaeII | ACGT | 1 cut(s) | 256 |
| MalI | GATC | 1 cut(s) | 171 |
| MboI | GATC | 1 cut(s) | 169 |
| MboII | GAAGA | 2 cut(s) | 26, 120 |
| MhlI | GDGCHC | 1 cut(s) | 350 |
| MluCI | AATT | 1 cut(s) | 236 |
| MmeI | TCCRAC | 1 cut(s) | 84 |
| MnlI | CCTC | 2 cut(s) | 90, 310 |
| Mva1269I | GAATGC | 1 cut(s) | 23 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 194 |
| NdeI | CATATG | 1 cut(s) | 352 |
| NdeII | GATC | 1 cut(s) | 169 |
| NlaIII | CATG | 5 cut(s) | 9, 143, 330, 380, 397 |
| NspI | RCATGY | 1 cut(s) | 330 |
| PctI | GAATGC | 1 cut(s) | 23 |
| PfeI | GAWTC | 1 cut(s) | 369 |
| PkrI | GCNGC | 1 cut(s) | 190 |
| Psp1406I | AACGTT | 1 cut(s) | 256 |
| RsaI | GTAC | 2 cut(s) | 148, 342 |
| RsaNI | GTAC | 2 cut(s) | 147, 341 |
| SatI | GCNGC | 1 cut(s) | 189 |
| Sau3AI | GATC | 1 cut(s) | 169 |
| SduI | GDGCHC | 1 cut(s) | 350 |
| SetI | ASST | 6 cut(s) | 31, 36, 122, 220, 259, 285 |
| SfaNI | GCATC | 1 cut(s) | 379 |
| SfcI | CTRYAG | 1 cut(s) | 210 |
| Sse9I | AATT | 1 cut(s) | 236 |
| TaaI | ACNGT | 1 cut(s) | 214 |
| TaiI | ACGT | 1 cut(s) | 259 |
| TasI | AATT | 1 cut(s) | 236 |
| TatI | WGTACW | 1 cut(s) | 340 |
| TfiI | GAWTC | 1 cut(s) | 369 |
| TseI | GCWGC | 1 cut(s) | 188 |
| TspDTI | ATGAA | 2 cut(s) | 112, 119 |
| XceI | RCATGY | 1 cut(s) | 330 |