Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 946 |
| AatII | GACGTC | 1 cut(s) | 932 |
| Acc65I | GGTACC | 2 cut(s) | 604, 685 |
| AccB1I | GGYRCC | 4 cut(s) | 155, 604, 685, 784 |
| AciI | CCGC | 1 cut(s) | 699 |
| AclWI | GGATC | 6 cut(s) | 259, 269, 277, 282, 290, 470 |
| AcuI | CTGAAG | 1 cut(s) | 240 |
| AcyI | GRCGYC | 1 cut(s) | 929 |
| AfaI | GTAC | 3 cut(s) | 327, 606, 687 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 695, 960 |
| AgsI | TTSAA | 1 cut(s) | 912 |
| AjnI | CCWGG | 2 cut(s) | 278, 607 |
| AleI | CACNNNNGTG | 1 cut(s) | 782 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 243, 275 |
| AluBI | AGCT | 4 cut(s) | 70, 670, 915, 968 |
| AluI | AGCT | 4 cut(s) | 70, 670, 915, 968 |
| AlwI | GGATC | 6 cut(s) | 259, 269, 277, 282, 290, 470 |
| Ama87I | CYCGRG | 1 cut(s) | 160 |
| AoxI | GGCC | 2 cut(s) | 290, 549 |
| ApeKI | GCWGC | 3 cut(s) | 793, 841, 888 |
| Asp718I | GGTACC | 2 cut(s) | 604, 685 |
| AsuHPI | GGTGA | 1 cut(s) | 287 |
| AvaI | CYCGRG | 1 cut(s) | 160 |
| BaeGI | GKGCMC | 2 cut(s) | 160, 789 |
| BamHI | GGATCC | 2 cut(s) | 274, 282 |
| BanI | GGYRCC | 4 cut(s) | 155, 604, 685, 784 |
| BanII | GRGCYC | 1 cut(s) | 570 |
| BbvI | GCAGC | 3 cut(s) | 780, 828, 875 |
| BccI | CCATC | 1 cut(s) | 242 |
| BciT130I | CCWGG | 2 cut(s) | 280, 609 |
| BclI | TGATCA | 2 cut(s) | 414, 774 |
| BfaI | CTAG | 3 cut(s) | 9, 128, 515 |
| BisI | GCNGC | 3 cut(s) | 794, 842, 889 |
| BlpI | GCTNAGC | 1 cut(s) | 141 |
| BlsI | GCNGC | 3 cut(s) | 795, 843, 890 |
| Bme1390I | CCNGG | 2 cut(s) | 280, 609 |
| BmeT110I | CYCGRG | 1 cut(s) | 160 |
| BmiI | GGNNCC | 6 cut(s) | 157, 276, 284, 606, 687, 786 |
| BmrFI | CCNGG | 2 cut(s) | 280, 609 |
| BmsI | GCATC | 4 cut(s) | 22, 273, 342, 586 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 141 |
| BpuEI | CTTGAG | 2 cut(s) | 203, 321 |
| BsaBI | GATNNNNATC | 1 cut(s) | 36 |
| BsaHI | GRCGYC | 1 cut(s) | 929 |
| BsaJI | CCNNGG | 3 cut(s) | 278, 287, 942 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 695, 960 |
| Bse118I | RCCGGY | 1 cut(s) | 866 |
| Bse3DI | GCAATG | 1 cut(s) | 425 |
| Bse8I | GATNNNNATC | 1 cut(s) | 36 |
| BseBI | CCWGG | 2 cut(s) | 280, 609 |
| BseDI | CCNNGG | 3 cut(s) | 278, 287, 942 |
| BseGI | GGATG | 3 cut(s) | 37, 253, 601 |
| BseJI | GATNNNNATC | 1 cut(s) | 36 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 695, 960 |
| BseMI | GCAATG | 1 cut(s) | 425 |
| BseMII | CTCAG | 3 cut(s) | 555, 680, 930 |
| BseSI | GKGCMC | 2 cut(s) | 160, 789 |
| BseXI | GCAGC | 3 cut(s) | 780, 828, 875 |
| BseYI | CCCAGC | 1 cut(s) | 150 |
| BsgI | GTGCAG | 1 cut(s) | 404 |
| Bsh1285I | CGRYCG | 1 cut(s) | 942 |
| BshFI | GGCC | 2 cut(s) | 292, 551 |
| BshNI | GGYRCC | 4 cut(s) | 155, 604, 685, 784 |
| BsiEI | CGRYCG | 1 cut(s) | 942 |
| BsiHKCI | CYCGRG | 1 cut(s) | 160 |
| BsiSI | CCGG | 1 cut(s) | 867 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 695, 960 |
| BsnI | GGCC | 2 cut(s) | 292, 551 |
| BsoBI | CYCGRG | 1 cut(s) | 160 |
| Bsp1286I | GDGCHC | 3 cut(s) | 160, 570, 789 |
| Bsp143I | GATC | 8 cut(s) | 170, 251, 274, 282, 414, 454, 475, 774 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 141 |
| BspACI | CCGC | 1 cut(s) | 699 |
| BspANI | GGCC | 2 cut(s) | 292, 551 |
| BspCNI | CTCAG | 3 cut(s) | 556, 679, 929 |
| BspLI | GGNNCC | 6 cut(s) | 157, 276, 284, 606, 687, 786 |
| BspPI | GGATC | 6 cut(s) | 259, 269, 277, 282, 290, 470 |
| BspT107I | GGYRCC | 4 cut(s) | 155, 604, 685, 784 |
| BsrDI | GCAATG | 1 cut(s) | 425 |
| BsrFI | RCCGGY | 1 cut(s) | 866 |
| BssAI | RCCGGY | 1 cut(s) | 866 |
| BssECI | CCNNGG | 3 cut(s) | 278, 287, 942 |
| BssMI | GATC | 8 cut(s) | 170, 251, 274, 282, 414, 454, 475, 774 |
| BssNI | GRCGYC | 1 cut(s) | 929 |
| Bst2UI | CCWGG | 2 cut(s) | 280, 609 |
| Bst4CI | ACNGT | 3 cut(s) | 234, 755, 943 |
| BstACI | GRCGYC | 1 cut(s) | 929 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 137, 802 |
| BstC8I | GCNNGC | 5 cut(s) | 117, 387, 627, 846, 850 |
| BstDEI | CTNAG | 4 cut(s) | 141, 564, 666, 916 |
| BstDSI | CCRYGG | 1 cut(s) | 942 |
| BstF5I | GGATG | 3 cut(s) | 37, 253, 601 |
| BstKTI | GATC | 8 cut(s) | 173, 254, 277, 285, 417, 457, 478, 777 |
| BstMBI | GATC | 8 cut(s) | 170, 251, 274, 282, 414, 454, 475, 774 |
| BstMCI | CGRYCG | 1 cut(s) | 942 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 137, 793, 802, 841 |
| BstNI | CCWGG | 2 cut(s) | 280, 609 |
| BstNSI | RCATGY | 3 cut(s) | 119, 629, 852 |
| BstSCI | CCNGG | 2 cut(s) | 278, 607 |
| BstSLI | GKGCMC | 2 cut(s) | 160, 789 |
| BstV1I | GCAGC | 3 cut(s) | 780, 828, 875 |
| BstX2I | RGATCY | 3 cut(s) | 251, 274, 282 |
| BstYI | RGATCY | 3 cut(s) | 251, 274, 282 |
| BsuRI | GGCC | 2 cut(s) | 292, 551 |
| BtgI | CCRYGG | 1 cut(s) | 942 |
| BtsCI | GGATG | 3 cut(s) | 37, 253, 601 |
| Cac8I | GCNNGC | 5 cut(s) | 117, 387, 627, 846, 850 |
| Cfr10I | RCCGGY | 1 cut(s) | 866 |
| Csp6I | GTAC | 3 cut(s) | 326, 605, 686 |
| CviAII | CATG | 5 cut(s) | 116, 320, 626, 630, 849 |
| CviQI | GTAC | 3 cut(s) | 326, 605, 686 |
| DdeI | CTNAG | 4 cut(s) | 141, 564, 666, 916 |
| DpnI | GATC | 8 cut(s) | 172, 253, 276, 284, 416, 456, 477, 776 |
| DpnII | GATC | 8 cut(s) | 170, 251, 274, 282, 414, 454, 475, 774 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 946 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 946 |
| Eco147I | AGGCCT | 1 cut(s) | 551 |
| Eco24I | GRGCYC | 1 cut(s) | 570 |
| Eco57I | CTGAAG | 1 cut(s) | 240 |
| Eco88I | CYCGRG | 1 cut(s) | 160 |
| EcoRII | CCWGG | 2 cut(s) | 278, 607 |
| EcoT22I | ATGCAT | 1 cut(s) | 631 |
| EcoT38I | GRGCYC | 1 cut(s) | 570 |
| FaeI | CATG | 5 cut(s) | 119, 323, 629, 633, 852 |
| FatI | CATG | 5 cut(s) | 115, 319, 625, 629, 848 |
| FbaI | TGATCA | 2 cut(s) | 414, 774 |
| Fnu4HI | GCNGC | 3 cut(s) | 794, 842, 889 |
| FokI | GGATG | 3 cut(s) | 44, 260, 608 |
| FriOI | GRGCYC | 1 cut(s) | 570 |
| Fsp4HI | GCNGC | 3 cut(s) | 794, 842, 889 |
| FspBI | CTAG | 3 cut(s) | 9, 128, 515 |
| GluI | GCNGC | 3 cut(s) | 794, 842, 889 |
| GsaI | CCCAGC | 1 cut(s) | 154 |
| HaeIII | GGCC | 2 cut(s) | 292, 551 |
| HapII | CCGG | 1 cut(s) | 867 |
| Hin1I | GRCGYC | 1 cut(s) | 929 |
| Hin1II | CATG | 5 cut(s) | 119, 323, 629, 633, 852 |
| HinfI | GANTC | 4 cut(s) | 728, 824, 875, 947 |
| HpaII | CCGG | 1 cut(s) | 867 |
| HphI | GGTGA | 1 cut(s) | 287 |
| Hpy166II | GTNNAC | 4 cut(s) | 230, 527, 751, 951 |
| Hpy188I | TCNGA | 4 cut(s) | 42, 305, 565, 919 |
| Hpy188III | TCNNGA | 5 cut(s) | 107, 168, 220, 466, 937 |
| Hpy8I | GTNNAC | 4 cut(s) | 230, 527, 751, 951 |
| Hpy99I | CGWCG | 1 cut(s) | 934 |
| HpyAV | CCTTC | 4 cut(s) | 83, 186, 217, 628 |
| HpyCH4III | ACNGT | 3 cut(s) | 234, 755, 943 |
| HpyCH4IV | ACGT | 2 cut(s) | 313, 929 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 137, 793, 802, 841 |
| HpyF3I | CTNAG | 4 cut(s) | 141, 564, 666, 916 |
| HpySE526I | ACGT | 2 cut(s) | 313, 929 |
| Hsp92I | GRCGYC | 1 cut(s) | 929 |
| Hsp92II | CATG | 5 cut(s) | 119, 323, 629, 633, 852 |
| KpnI | GGTACC | 2 cut(s) | 608, 689 |
| Ksp22I | TGATCA | 2 cut(s) | 414, 774 |
| Kzo9I | GATC | 8 cut(s) | 170, 251, 274, 282, 414, 454, 475, 774 |
| Lsp1109I | GCAGC | 3 cut(s) | 780, 828, 875 |
| LweI | GCATC | 4 cut(s) | 22, 273, 342, 586 |
| MaeI | CTAG | 3 cut(s) | 9, 128, 515 |
| MaeII | ACGT | 2 cut(s) | 313, 929 |
| MalI | GATC | 8 cut(s) | 172, 253, 276, 284, 416, 456, 477, 776 |
| MboI | GATC | 8 cut(s) | 170, 251, 274, 282, 414, 454, 475, 774 |
| MboII | GAAGA | 3 cut(s) | 246, 734, 849 |
| MflI | RGATCY | 3 cut(s) | 251, 274, 282 |
| MhlI | GDGCHC | 3 cut(s) | 160, 570, 789 |
| MluCI | AATT | 4 cut(s) | 377, 469, 574, 853 |
| MlyI | GAGTC | 3 cut(s) | 737, 884, 956 |
| Mph1103I | ATGCAT | 1 cut(s) | 631 |
| MseI | TTAA | 2 cut(s) | 434, 970 |
| MslI | CAYNNNNRTG | 1 cut(s) | 782 |
| MspI | CCGG | 1 cut(s) | 867 |
| MspR9I | CCNGG | 2 cut(s) | 280, 609 |
| MvaI | CCWGG | 2 cut(s) | 280, 609 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 137, 793, 802, 841 |
| NdeII | GATC | 8 cut(s) | 170, 251, 274, 282, 414, 454, 475, 774 |
| NlaIII | CATG | 5 cut(s) | 119, 323, 629, 633, 852 |
| NlaIV | GGNNCC | 6 cut(s) | 157, 276, 284, 606, 687, 786 |
| NmeAIII | GCCGAG | 1 cut(s) | 268 |
| NsiI | ATGCAT | 1 cut(s) | 631 |
| NspI | RCATGY | 3 cut(s) | 119, 629, 852 |
| OliI | CACNNNNGTG | 1 cut(s) | 782 |
| PaeI | GCATGC | 3 cut(s) | 119, 629, 852 |
| PceI | AGGCCT | 1 cut(s) | 551 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 935 |
| PfeI | GAWTC | 1 cut(s) | 824 |
| PkrI | GCNGC | 3 cut(s) | 795, 843, 890 |
| PleI | GAGTC | 3 cut(s) | 736, 883, 955 |
| PpsI | GAGTC | 3 cut(s) | 736, 883, 955 |
| Psp6I | CCWGG | 2 cut(s) | 278, 607 |
| PspFI | CCCAGC | 1 cut(s) | 150 |
| PspGI | CCWGG | 2 cut(s) | 278, 607 |
| PspN4I | GGNNCC | 6 cut(s) | 157, 276, 284, 606, 687, 786 |
| PsuI | RGATCY | 3 cut(s) | 251, 274, 282 |
| RsaI | GTAC | 3 cut(s) | 327, 606, 687 |
| RsaNI | GTAC | 3 cut(s) | 326, 605, 686 |
| RseI | CAYNNNNRTG | 1 cut(s) | 782 |
| SaqAI | TTAA | 2 cut(s) | 434, 970 |
| SatI | GCNGC | 3 cut(s) | 794, 842, 889 |
| Sau3AI | GATC | 8 cut(s) | 170, 251, 274, 282, 414, 454, 475, 774 |
| SchI | GAGTC | 3 cut(s) | 737, 884, 956 |
| ScrFI | CCNGG | 2 cut(s) | 280, 609 |
| SduI | GDGCHC | 3 cut(s) | 160, 570, 789 |
| SfaNI | GCATC | 4 cut(s) | 22, 273, 342, 586 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 782 |
| SmlI | CTYRAG | 2 cut(s) | 218, 336 |
| SmoI | CTYRAG | 2 cut(s) | 218, 336 |
| SphI | GCATGC | 3 cut(s) | 119, 629, 852 |
| Sse9I | AATT | 4 cut(s) | 377, 469, 574, 853 |
| SseBI | AGGCCT | 1 cut(s) | 551 |
| SsiI | CCGC | 1 cut(s) | 699 |
| SspMI | CTAG | 3 cut(s) | 9, 128, 515 |
| StuI | AGGCCT | 1 cut(s) | 551 |
| StyD4I | CCNGG | 2 cut(s) | 278, 607 |
| TaaI | ACNGT | 3 cut(s) | 234, 755, 943 |
| TaiI | ACGT | 2 cut(s) | 316, 932 |
| TaqI | TCGA | 4 cut(s) | 106, 457, 487, 938 |
| TasI | AATT | 4 cut(s) | 377, 469, 574, 853 |
| TfiI | GAWTC | 1 cut(s) | 824 |
| Tru1I | TTAA | 2 cut(s) | 434, 970 |
| Tru9I | TTAA | 2 cut(s) | 434, 970 |
| TseI | GCWGC | 3 cut(s) | 793, 841, 888 |
| TspDTI | ATGAA | 2 cut(s) | 102, 549 |
| XceI | RCATGY | 3 cut(s) | 119, 629, 852 |
| XspI | CTAG | 3 cut(s) | 9, 128, 515 |
| ZraI | GACGTC | 1 cut(s) | 930 |
| Zsp2I | ATGCAT | 1 cut(s) | 631 |