Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 647 |
| AccB1I | GGYRCC | 1 cut(s) | 647 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 520, 644 |
| AccI | GTMKAC | 1 cut(s) | 691 |
| AccII | CGCG | 3 cut(s) | 501, 546, 551 |
| AciI | CCGC | 7 cut(s) | 429, 499, 546, 556, 567, 651, 659 |
| AcsI | RAATTY | 1 cut(s) | 224 |
| AfaI | GTAC | 2 cut(s) | 276, 649 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 23, 520, 644, 680 |
| AflIII | ACRYGT | 1 cut(s) | 701 |
| AgsI | TTSAA | 1 cut(s) | 270 |
| AjiI | CACGTC | 1 cut(s) | 702 |
| AluBI | AGCT | 7 cut(s) | 125, 188, 452, 517, 526, 605, 750 |
| AluI | AGCT | 7 cut(s) | 125, 188, 452, 517, 526, 605, 750 |
| Alw26I | GTCTC | 4 cut(s) | 93, 289, 341, 489 |
| AoxI | GGCC | 1 cut(s) | 134 |
| ApeKI | GCWGC | 3 cut(s) | 482, 605, 742 |
| ApoI | RAATTY | 1 cut(s) | 224 |
| AseI | ATTAAT | 1 cut(s) | 162 |
| Asp718I | GGTACC | 1 cut(s) | 647 |
| AspLEI | GCGC | 4 cut(s) | 53, 503, 546, 551 |
| AsuC2I | CCSGG | 2 cut(s) | 588, 716 |
| AsuHPI | GGTGA | 2 cut(s) | 581, 593 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 631, 639, 664, 672 |
| BanI | GGYRCC | 1 cut(s) | 647 |
| BanII | GRGCYC | 2 cut(s) | 594, 638 |
| BbvI | GCAGC | 3 cut(s) | 494, 592, 754 |
| BccI | CCATC | 1 cut(s) | 41 |
| BceAI | ACGGC | 1 cut(s) | 144 |
| BciVI | GTATCC | 1 cut(s) | 215 |
| BclI | TGATCA | 1 cut(s) | 676 |
| BcnI | CCSGG | 2 cut(s) | 588, 716 |
| BcoDI | GTCTC | 4 cut(s) | 93, 289, 341, 489 |
| BfaI | CTAG | 1 cut(s) | 312 |
| BfoI | RGCGCY | 1 cut(s) | 54 |
| BfuI | GTATCC | 1 cut(s) | 215 |
| BisI | GCNGC | 4 cut(s) | 483, 547, 606, 743 |
| BlsI | GCNGC | 4 cut(s) | 484, 548, 607, 744 |
| BmcAI | AGTACT | 1 cut(s) | 276 |
| Bme1390I | CCNGG | 2 cut(s) | 588, 716 |
| BmgBI | CACGTC | 1 cut(s) | 702 |
| BmiI | GGNNCC | 2 cut(s) | 593, 649 |
| BmrFI | CCNGG | 2 cut(s) | 588, 716 |
| BmsI | GCATC | 2 cut(s) | 522, 570 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 227, 259 |
| BpuEI | CTTGAG | 1 cut(s) | 407 |
| BpuMI | CCSGG | 2 cut(s) | 588, 716 |
| BsaI | GGTCTC | 1 cut(s) | 489 |
| BsaJI | CCNNGG | 3 cut(s) | 211, 587, 775 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 23, 520, 644, 680 |
| Bse1I | ACTGG | 1 cut(s) | 325 |
| Bse3DI | GCAATG | 1 cut(s) | 445 |
| BseDI | CCNNGG | 3 cut(s) | 211, 587, 775 |
| BseGI | GGATG | 1 cut(s) | 373 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 23, 520, 644, 680 |
| BseMI | GCAATG | 1 cut(s) | 445 |
| BseMII | CTCAG | 2 cut(s) | 225, 602 |
| BseNI | ACTGG | 1 cut(s) | 325 |
| BseXI | GCAGC | 3 cut(s) | 494, 592, 754 |
| BseYI | CCCAGC | 2 cut(s) | 503, 513 |
| BsgI | GTGCAG | 1 cut(s) | 591 |
| Bsh1236I | CGCG | 3 cut(s) | 501, 546, 551 |
| BshFI | GGCC | 1 cut(s) | 136 |
| BshNI | GGYRCC | 1 cut(s) | 647 |
| BsiSI | CCGG | 2 cut(s) | 587, 716 |
| BslFI | GGGAC | 3 cut(s) | 690, 698, 784 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 23, 520, 644, 680 |
| BsmAI | GTCTC | 4 cut(s) | 93, 289, 341, 489 |
| BsmFI | GGGAC | 3 cut(s) | 690, 698, 784 |
| BsmI | GAATGC | 2 cut(s) | 17, 265 |
| BsnI | GGCC | 1 cut(s) | 136 |
| Bso31I | GGTCTC | 1 cut(s) | 489 |
| Bsp1286I | GDGCHC | 2 cut(s) | 594, 638 |
| Bsp143I | GATC | 2 cut(s) | 571, 676 |
| BspACI | CCGC | 7 cut(s) | 429, 499, 546, 556, 567, 651, 659 |
| BspANI | GGCC | 1 cut(s) | 136 |
| BspCNI | CTCAG | 2 cut(s) | 226, 603 |
| BspFNI | CGCG | 3 cut(s) | 501, 546, 551 |
| BspLI | GGNNCC | 2 cut(s) | 593, 649 |
| BspT107I | GGYRCC | 1 cut(s) | 647 |
| BspTNI | GGTCTC | 1 cut(s) | 489 |
| BsrDI | GCAATG | 1 cut(s) | 445 |
| BsrI | ACTGG | 1 cut(s) | 325 |
| BssECI | CCNNGG | 3 cut(s) | 211, 587, 775 |
| BssMI | GATC | 2 cut(s) | 571, 676 |
| BssT1I | CCWWGG | 2 cut(s) | 211, 775 |
| Bst4CI | ACNGT | 2 cut(s) | 696, 736 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 308 |
| BstC8I | GCNNGC | 3 cut(s) | 147, 181, 634 |
| BstDEI | CTNAG | 4 cut(s) | 234, 278, 446, 611 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 21 |
| BstF5I | GGATG | 1 cut(s) | 373 |
| BstFNI | CGCG | 3 cut(s) | 501, 546, 551 |
| BstH2I | RGCGCY | 1 cut(s) | 54 |
| BstHHI | GCGC | 4 cut(s) | 53, 503, 546, 551 |
| BstKTI | GATC | 2 cut(s) | 574, 679 |
| BstMAI | GTCTC | 4 cut(s) | 93, 289, 341, 489 |
| BstMBI | GATC | 2 cut(s) | 571, 676 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 59, 142, 155, 185, 308, 514, 523, 532, 541 |
| BstNSI | RCATGY | 2 cut(s) | 149, 183 |
| BstSCI | CCNGG | 2 cut(s) | 586, 714 |
| BstUI | CGCG | 3 cut(s) | 501, 546, 551 |
| BstV1I | GCAGC | 3 cut(s) | 494, 592, 754 |
| BsuI | GTATCC | 1 cut(s) | 215 |
| BsuRI | GGCC | 1 cut(s) | 136 |
| BtrI | CACGTC | 1 cut(s) | 702 |
| BtsCI | GGATG | 1 cut(s) | 373 |
| BtsI | GCAGTG | 1 cut(s) | 660 |
| BtsIMutI | CAGTG | 5 cut(s) | 111, 398, 608, 660, 805 |
| Cac8I | GCNNGC | 3 cut(s) | 147, 181, 634 |
| CfoI | GCGC | 4 cut(s) | 53, 503, 546, 551 |
| CseI | GACGC | 1 cut(s) | 474 |
| Csp6I | GTAC | 2 cut(s) | 275, 648 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 197, 232 |
| CviAII | CATG | 2 cut(s) | 146, 180 |
| CviQI | GTAC | 2 cut(s) | 275, 648 |
| DdeI | CTNAG | 4 cut(s) | 234, 278, 446, 611 |
| DpnI | GATC | 2 cut(s) | 573, 678 |
| DpnII | GATC | 2 cut(s) | 571, 676 |
| EciI | GGCGGA | 1 cut(s) | 571 |
| Eco130I | CCWWGG | 2 cut(s) | 211, 775 |
| Eco147I | AGGCCT | 1 cut(s) | 136 |
| Eco24I | GRGCYC | 2 cut(s) | 594, 638 |
| Eco31I | GGTCTC | 1 cut(s) | 489 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 21 |
| EcoT14I | CCWWGG | 2 cut(s) | 211, 775 |
| EcoT38I | GRGCYC | 2 cut(s) | 594, 638 |
| ErhI | CCWWGG | 2 cut(s) | 211, 775 |
| FaeI | CATG | 2 cut(s) | 149, 183 |
| FaiI | YATR | 3 cut(s) | 147, 167, 181 |
| FaqI | GGGAC | 3 cut(s) | 690, 698, 784 |
| FatI | CATG | 2 cut(s) | 145, 179 |
| FauI | CCCGC | 1 cut(s) | 652 |
| FbaI | TGATCA | 1 cut(s) | 676 |
| FblI | GTMKAC | 1 cut(s) | 691 |
| Fnu4HI | GCNGC | 4 cut(s) | 483, 547, 606, 743 |
| FokI | GGATG | 1 cut(s) | 380 |
| FriOI | GRGCYC | 2 cut(s) | 594, 638 |
| Fsp4HI | GCNGC | 4 cut(s) | 483, 547, 606, 743 |
| FspBI | CTAG | 1 cut(s) | 312 |
| GlaI | GCGC | 4 cut(s) | 52, 502, 545, 550 |
| GluI | GCNGC | 4 cut(s) | 483, 547, 606, 743 |
| GsaI | CCCAGC | 2 cut(s) | 507, 517 |
| HaeII | RGCGCY | 1 cut(s) | 54 |
| HaeIII | GGCC | 1 cut(s) | 136 |
| HapII | CCGG | 2 cut(s) | 587, 716 |
| HgaI | GACGC | 1 cut(s) | 474 |
| HhaI | GCGC | 4 cut(s) | 53, 503, 546, 551 |
| Hin1II | CATG | 2 cut(s) | 149, 183 |
| Hin6I | GCGC | 4 cut(s) | 51, 501, 544, 549 |
| HinP1I | GCGC | 4 cut(s) | 51, 501, 544, 549 |
| HincII | GTYRAC | 2 cut(s) | 667, 699 |
| HindII | GTYRAC | 2 cut(s) | 667, 699 |
| HinfI | GANTC | 4 cut(s) | 242, 349, 420, 781 |
| HpaII | CCGG | 2 cut(s) | 587, 716 |
| HphI | GGTGA | 2 cut(s) | 581, 593 |
| Hpy166II | GTNNAC | 3 cut(s) | 667, 692, 699 |
| Hpy188I | TCNGA | 5 cut(s) | 21, 255, 294, 490, 596 |
| Hpy188III | TCNNGA | 3 cut(s) | 365, 424, 760 |
| Hpy8I | GTNNAC | 3 cut(s) | 667, 692, 699 |
| Hpy99I | CGWCG | 3 cut(s) | 600, 758, 789 |
| HpyAV | CCTTC | 1 cut(s) | 260 |
| HpyCH4III | ACNGT | 2 cut(s) | 696, 736 |
| HpyCH4IV | ACGT | 3 cut(s) | 669, 701, 724 |
| HpyCH4V | TGCA | 7 cut(s) | 145, 149, 183, 265, 302, 438, 608 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 59, 142, 155, 185, 308, 514, 523, 532, 541 |
| HpyF3I | CTNAG | 4 cut(s) | 234, 278, 446, 611 |
| HpySE526I | ACGT | 3 cut(s) | 669, 701, 724 |
| Hsp92II | CATG | 2 cut(s) | 149, 183 |
| HspAI | GCGC | 4 cut(s) | 51, 501, 544, 549 |
| KpnI | GGTACC | 1 cut(s) | 651 |
| Ksp22I | TGATCA | 1 cut(s) | 676 |
| Kzo9I | GATC | 2 cut(s) | 571, 676 |
| LmnI | GCTCC | 4 cut(s) | 523, 558, 597, 602 |
| Lsp1109I | GCAGC | 3 cut(s) | 494, 592, 754 |
| LweI | GCATC | 2 cut(s) | 522, 570 |
| MaeI | CTAG | 1 cut(s) | 312 |
| MaeII | ACGT | 3 cut(s) | 669, 701, 724 |
| MaeIII | GTNAC | 2 cut(s) | 239, 736 |
| MalI | GATC | 2 cut(s) | 573, 678 |
| MboI | GATC | 2 cut(s) | 571, 676 |
| MboII | GAAGA | 2 cut(s) | 188, 392 |
| MhlI | GDGCHC | 2 cut(s) | 594, 638 |
| MluCI | AATT | 4 cut(s) | 36, 159, 224, 285 |
| MlyI | GAGTC | 3 cut(s) | 236, 343, 414 |
| MmeI | TCCRAC | 4 cut(s) | 55, 197, 321, 619 |
| MnlI | CCTC | 8 cut(s) | 17, 21, 27, 71, 169, 484, 611, 759 |
| MseI | TTAA | 2 cut(s) | 33, 162 |
| MspA1I | CMGCKG | 1 cut(s) | 567 |
| MspI | CCGG | 2 cut(s) | 587, 716 |
| MspR9I | CCNGG | 2 cut(s) | 588, 716 |
| MteI | GCGCNGCGC | 1 cut(s) | 547 |
| Mva1269I | GAATGC | 2 cut(s) | 17, 265 |
| MvnI | CGCG | 3 cut(s) | 501, 546, 551 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 59, 142, 155, 185, 308, 514, 523, 532, 541 |
| NciI | CCSGG | 2 cut(s) | 588, 716 |
| NdeII | GATC | 2 cut(s) | 571, 676 |
| NlaIII | CATG | 2 cut(s) | 149, 183 |
| NlaIV | GGNNCC | 2 cut(s) | 593, 649 |
| NmeAIII | GCCGAG | 1 cut(s) | 134 |
| NmuCI | GTSAC | 1 cut(s) | 239 |
| NspI | RCATGY | 2 cut(s) | 149, 183 |
| PaeI | GCATGC | 2 cut(s) | 149, 183 |
| PceI | AGGCCT | 1 cut(s) | 136 |
| PctI | GAATGC | 2 cut(s) | 17, 265 |
| PfeI | GAWTC | 1 cut(s) | 781 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 520, 644 |
| PfoI | TCCNGGA | 1 cut(s) | 714 |
| PkrI | GCNGC | 4 cut(s) | 484, 548, 607, 744 |
| PleI | GAGTC | 3 cut(s) | 236, 343, 414 |
| PpsI | GAGTC | 3 cut(s) | 236, 343, 414 |
| PshBI | ATTAAT | 1 cut(s) | 162 |
| PspFI | CCCAGC | 2 cut(s) | 503, 513 |
| PspN4I | GGNNCC | 2 cut(s) | 593, 649 |
| RsaI | GTAC | 2 cut(s) | 276, 649 |
| RsaNI | GTAC | 2 cut(s) | 275, 648 |
| SaqAI | TTAA | 2 cut(s) | 33, 162 |
| SatI | GCNGC | 4 cut(s) | 483, 547, 606, 743 |
| Sau3AI | GATC | 2 cut(s) | 571, 676 |
| ScaI | AGTACT | 1 cut(s) | 276 |
| SchI | GAGTC | 3 cut(s) | 236, 343, 414 |
| ScrFI | CCNGG | 2 cut(s) | 588, 716 |
| SduI | GDGCHC | 2 cut(s) | 594, 638 |
| SfaNI | GCATC | 2 cut(s) | 522, 570 |
| SmlI | CTYRAG | 1 cut(s) | 422 |
| SmoI | CTYRAG | 1 cut(s) | 422 |
| SphI | GCATGC | 2 cut(s) | 149, 183 |
| Sse9I | AATT | 4 cut(s) | 36, 159, 224, 285 |
| SseBI | AGGCCT | 1 cut(s) | 136 |
| SsiI | CCGC | 7 cut(s) | 429, 499, 546, 556, 567, 651, 659 |
| SspMI | CTAG | 1 cut(s) | 312 |
| StuI | AGGCCT | 1 cut(s) | 136 |
| StyD4I | CCNGG | 2 cut(s) | 586, 714 |
| StyI | CCWWGG | 2 cut(s) | 211, 775 |
| TaaI | ACNGT | 2 cut(s) | 696, 736 |
| TaiI | ACGT | 3 cut(s) | 672, 704, 727 |
| TaqI | TCGA | 1 cut(s) | 45 |
| TasI | AATT | 4 cut(s) | 36, 159, 224, 285 |
| TatI | WGTACW | 1 cut(s) | 274 |
| TauI | GCSGC | 1 cut(s) | 549 |
| TfiI | GAWTC | 1 cut(s) | 781 |
| Tru1I | TTAA | 2 cut(s) | 33, 162 |
| Tru9I | TTAA | 2 cut(s) | 33, 162 |
| TscAI | CASTG | 4 cut(s) | 118, 398, 615, 660 |
| TseFI | GTSAC | 1 cut(s) | 239 |
| TseI | GCWGC | 3 cut(s) | 482, 605, 742 |
| Tsp45I | GTSAC | 1 cut(s) | 239 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| TspGWI | ACGGA | 2 cut(s) | 236, 735 |
| TspRI | CASTG | 4 cut(s) | 118, 398, 615, 660 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 520, 644 |
| VspI | ATTAAT | 1 cut(s) | 162 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 21 |
| XapI | RAATTY | 1 cut(s) | 224 |
| XceI | RCATGY | 2 cut(s) | 149, 183 |
| XmiI | GTMKAC | 1 cut(s) | 691 |
| XspI | CTAG | 1 cut(s) | 312 |
| ZrmI | AGTACT | 1 cut(s) | 276 |