Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 793 |
| Acc36I | ACCTGC | 1 cut(s) | 793 |
| Acc65I | GGTACC | 1 cut(s) | 1130 |
| AccB1I | GGYRCC | 2 cut(s) | 1130, 1344 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 504 |
| AccIII | TCCGGA | 1 cut(s) | 825 |
| AciI | CCGC | 3 cut(s) | 1158, 1256, 1283 |
| AclWI | GGATC | 2 cut(s) | 686, 956 |
| AcsI | RAATTY | 3 cut(s) | 500, 534, 976 |
| AfaI | GTAC | 1 cut(s) | 1132 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 22, 504, 802, 843, 1140, 1354, 1355, 1381 |
| AflII | CTTAAG | 1 cut(s) | 20 |
| AgsI | TTSAA | 2 cut(s) | 359, 1079 |
| AjnI | CCWGG | 1 cut(s) | 1348 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 523, 555 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1186, 1218 |
| AluBI | AGCT | 9 cut(s) | 239, 355, 674, 722, 770, 776, 989, 1082, 1231 |
| AluI | AGCT | 9 cut(s) | 239, 355, 674, 722, 770, 776, 989, 1082, 1231 |
| Alw26I | GTCTC | 1 cut(s) | 591 |
| AlwI | GGATC | 2 cut(s) | 686, 956 |
| Ama87I | CYCGRG | 1 cut(s) | 900 |
| Aor13HI | TCCGGA | 1 cut(s) | 825 |
| AoxI | GGCC | 3 cut(s) | 13, 566, 1155 |
| ApeKI | GCWGC | 4 cut(s) | 236, 476, 938, 1093 |
| ApoI | RAATTY | 3 cut(s) | 500, 534, 976 |
| AseI | ATTAAT | 1 cut(s) | 914 |
| Asp718I | GGTACC | 1 cut(s) | 1130 |
| AspLEI | GCGC | 1 cut(s) | 1268 |
| AspS9I | GGNCC | 3 cut(s) | 567, 834, 1155 |
| AsuC2I | CCSGG | 1 cut(s) | 1170 |
| AsuHPI | GGTGA | 2 cut(s) | 719, 821 |
| AsuNHI | GCTAGC | 1 cut(s) | 670 |
| AvaI | CYCGRG | 1 cut(s) | 900 |
| AvaII | GGWCC | 1 cut(s) | 834 |
| BaeGI | GKGCMC | 1 cut(s) | 1349 |
| BanI | GGYRCC | 2 cut(s) | 1130, 1344 |
| BbsI | GAAGAC | 1 cut(s) | 77 |
| BbvI | GCAGC | 4 cut(s) | 248, 463, 925, 1080 |
| BccI | CCATC | 2 cut(s) | 66, 806 |
| BceAI | ACGGC | 1 cut(s) | 1256 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1289, 1323 |
| BciT130I | CCWGG | 1 cut(s) | 1350 |
| BciVI | GTATCC | 1 cut(s) | 840 |
| BcnI | CCSGG | 1 cut(s) | 1170 |
| BcoDI | GTCTC | 1 cut(s) | 591 |
| BfaI | CTAG | 6 cut(s) | 626, 671, 675, 723, 986, 1116 |
| BfrI | CTTAAG | 1 cut(s) | 20 |
| BfuAI | ACCTGC | 1 cut(s) | 793 |
| BfuI | GTATCC | 1 cut(s) | 840 |
| BisI | GCNGC | 5 cut(s) | 237, 477, 939, 1094, 1158 |
| BlsI | GCNGC | 5 cut(s) | 238, 478, 940, 1095, 1159 |
| Bme1390I | CCNGG | 2 cut(s) | 1170, 1350 |
| Bme18I | GGWCC | 1 cut(s) | 834 |
| BmeT110I | CYCGRG | 1 cut(s) | 900 |
| BmgT120I | GGNCC | 3 cut(s) | 567, 834, 1155 |
| BmiI | GGNNCC | 2 cut(s) | 1132, 1346 |
| BmrFI | CCNGG | 2 cut(s) | 1170, 1350 |
| BmsI | GCATC | 2 cut(s) | 164, 1030 |
| BmtI | GCTAGC | 1 cut(s) | 674 |
| BoxI | GACNNNNGTC | 1 cut(s) | 902 |
| BpiI | GAAGAC | 1 cut(s) | 77 |
| BpuEI | CTTGAG | 2 cut(s) | 405, 1018 |
| BpuMI | CCSGG | 1 cut(s) | 1170 |
| BsaJI | CCNNGG | 4 cut(s) | 570, 842, 1348, 1349 |
| BsaWI | WCCGGW | 2 cut(s) | 731, 825 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1186, 1216, 1373, 1403 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 22, 504, 802, 843, 1140, 1354, 1355, 1381 |
| Bse118I | RCCGGY | 1 cut(s) | 1341 |
| BseAI | TCCGGA | 1 cut(s) | 825 |
| BseBI | CCWGG | 1 cut(s) | 1350 |
| BseDI | CCNNGG | 4 cut(s) | 570, 842, 1348, 1349 |
| BseGI | GGATG | 2 cut(s) | 549, 1291 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 22, 504, 802, 843, 1140, 1354, 1355, 1381 |
| BseMII | CTCAG | 1 cut(s) | 96 |
| BseRI | GAGGAG | 1 cut(s) | 122 |
| BseSI | GKGCMC | 1 cut(s) | 1349 |
| BseXI | GCAGC | 4 cut(s) | 248, 463, 925, 1080 |
| BseYI | CCCAGC | 3 cut(s) | 389, 1227, 1354 |
| BsgI | GTGCAG | 1 cut(s) | 1079 |
| BshFI | GGCC | 3 cut(s) | 15, 568, 1157 |
| BshNI | GGYRCC | 2 cut(s) | 1130, 1344 |
| BsiHKCI | CYCGRG | 1 cut(s) | 900 |
| BsiSI | CCGG | 4 cut(s) | 732, 826, 1169, 1342 |
| BslFI | GGGAC | 1 cut(s) | 998 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 22, 504, 802, 843, 1140, 1354, 1355, 1381 |
| BsmAI | GTCTC | 1 cut(s) | 591 |
| BsmFI | GGGAC | 1 cut(s) | 998 |
| BsmI | GAATGC | 1 cut(s) | 940 |
| BsnI | GGCC | 3 cut(s) | 15, 568, 1157 |
| BsoBI | CYCGRG | 1 cut(s) | 900 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1349 |
| Bsp13I | TCCGGA | 1 cut(s) | 825 |
| Bsp143I | GATC | 2 cut(s) | 678, 961 |
| BspACI | CCGC | 3 cut(s) | 1158, 1256, 1283 |
| BspANI | GGCC | 3 cut(s) | 15, 568, 1157 |
| BspCNI | CTCAG | 1 cut(s) | 97 |
| BspEI | TCCGGA | 1 cut(s) | 825 |
| BspHI | TCATGA | 1 cut(s) | 139 |
| BspLI | GGNNCC | 2 cut(s) | 1132, 1346 |
| BspMI | ACCTGC | 1 cut(s) | 793 |
| BspOI | GCTAGC | 1 cut(s) | 674 |
| BspPI | GGATC | 2 cut(s) | 686, 956 |
| BspT107I | GGYRCC | 2 cut(s) | 1130, 1344 |
| BspTI | CTTAAG | 1 cut(s) | 20 |
| BsrFI | RCCGGY | 1 cut(s) | 1341 |
| BssAI | RCCGGY | 1 cut(s) | 1341 |
| BssECI | CCNNGG | 4 cut(s) | 570, 842, 1348, 1349 |
| BssMI | GATC | 2 cut(s) | 678, 961 |
| BssT1I | CCWWGG | 2 cut(s) | 570, 842 |
| Bst2UI | CCWGG | 1 cut(s) | 1350 |
| Bst4CI | ACNGT | 4 cut(s) | 69, 83, 228, 1149 |
| BstAFI | CTTAAG | 1 cut(s) | 20 |
| BstC8I | GCNNGC | 1 cut(s) | 672 |
| BstDEI | CTNAG | 2 cut(s) | 105, 380 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 20 |
| BstF5I | GGATG | 2 cut(s) | 549, 1291 |
| BstHHI | GCGC | 1 cut(s) | 1268 |
| BstKTI | GATC | 2 cut(s) | 681, 964 |
| BstMAI | GTCTC | 1 cut(s) | 591 |
| BstMBI | GATC | 2 cut(s) | 678, 961 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 574, 626, 1030 |
| BstNI | CCWGG | 1 cut(s) | 1350 |
| BstNSI | RCATGY | 2 cut(s) | 1247, 1304 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 902 |
| BstSCI | CCNGG | 2 cut(s) | 1168, 1348 |
| BstSLI | GKGCMC | 1 cut(s) | 1349 |
| BstV1I | GCAGC | 4 cut(s) | 248, 463, 925, 1080 |
| BstV2I | GAAGAC | 1 cut(s) | 77 |
| BstX2I | RGATCY | 1 cut(s) | 678 |
| BstYI | RGATCY | 1 cut(s) | 678 |
| BsuI | GTATCC | 1 cut(s) | 840 |
| BsuRI | GGCC | 3 cut(s) | 15, 568, 1157 |
| BtsCI | GGATG | 2 cut(s) | 549, 1291 |
| BtsI | GCAGTG | 2 cut(s) | 193, 425 |
| BtsIMutI | CAGTG | 4 cut(s) | 193, 425, 913, 1119 |
| BveI | ACCTGC | 1 cut(s) | 793 |
| Cac8I | GCNNGC | 1 cut(s) | 672 |
| CciI | TCATGA | 1 cut(s) | 139 |
| CfoI | GCGC | 1 cut(s) | 1268 |
| Cfr10I | RCCGGY | 1 cut(s) | 1341 |
| Cfr13I | GGNCC | 3 cut(s) | 567, 834, 1155 |
| Csp6I | GTAC | 1 cut(s) | 1131 |
| CviAII | CATG | 6 cut(s) | 140, 215, 269, 442, 1244, 1301 |
| CviQI | GTAC | 1 cut(s) | 1131 |
| DdeI | CTNAG | 2 cut(s) | 105, 380 |
| DpnI | GATC | 2 cut(s) | 680, 963 |
| DpnII | GATC | 2 cut(s) | 678, 961 |
| Eco130I | CCWWGG | 2 cut(s) | 570, 842 |
| Eco47I | GGWCC | 1 cut(s) | 834 |
| Eco88I | CYCGRG | 1 cut(s) | 900 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 20 |
| EcoRII | CCWGG | 1 cut(s) | 1348 |
| EcoT14I | CCWWGG | 2 cut(s) | 570, 842 |
| ErhI | CCWWGG | 2 cut(s) | 570, 842 |
| FaeI | CATG | 6 cut(s) | 143, 218, 272, 445, 1247, 1304 |
| FaqI | GGGAC | 1 cut(s) | 998 |
| FatI | CATG | 6 cut(s) | 139, 214, 268, 441, 1243, 1300 |
| FauI | CCCGC | 1 cut(s) | 1249 |
| Fnu4HI | GCNGC | 5 cut(s) | 237, 477, 939, 1094, 1158 |
| FokI | GGATG | 2 cut(s) | 556, 1298 |
| Fsp4HI | GCNGC | 5 cut(s) | 237, 477, 939, 1094, 1158 |
| FspBI | CTAG | 6 cut(s) | 626, 671, 675, 723, 986, 1116 |
| GlaI | GCGC | 1 cut(s) | 1267 |
| GluI | GCNGC | 5 cut(s) | 237, 477, 939, 1094, 1158 |
| GsaI | CCCAGC | 3 cut(s) | 393, 1231, 1358 |
| HaeIII | GGCC | 3 cut(s) | 15, 568, 1157 |
| HapII | CCGG | 4 cut(s) | 732, 826, 1169, 1342 |
| HhaI | GCGC | 1 cut(s) | 1268 |
| Hin1II | CATG | 6 cut(s) | 143, 218, 272, 445, 1247, 1304 |
| Hin6I | GCGC | 1 cut(s) | 1266 |
| HinP1I | GCGC | 1 cut(s) | 1266 |
| HincII | GTYRAC | 1 cut(s) | 1238 |
| HindII | GTYRAC | 1 cut(s) | 1238 |
| HindIII | AAGCTT | 2 cut(s) | 353, 1080 |
| HinfI | GANTC | 5 cut(s) | 468, 898, 923, 1124, 1289 |
| HpaII | CCGG | 4 cut(s) | 732, 826, 1169, 1342 |
| HphI | GGTGA | 2 cut(s) | 719, 821 |
| Hpy166II | GTNNAC | 2 cut(s) | 221, 1238 |
| Hpy188I | TCNGA | 7 cut(s) | 106, 316, 596, 838, 885, 922, 1381 |
| Hpy188III | TCNNGA | 3 cut(s) | 140, 826, 1310 |
| Hpy8I | GTNNAC | 2 cut(s) | 221, 1238 |
| HpyAV | CCTTC | 8 cut(s) | 145, 199, 353, 388, 441, 711, 867, 887 |
| HpyCH4III | ACNGT | 4 cut(s) | 69, 83, 228, 1149 |
| HpyCH4V | TGCA | 4 cut(s) | 47, 121, 1096, 1186 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 574, 626, 1030 |
| HpyF3I | CTNAG | 2 cut(s) | 105, 380 |
| Hsp92II | CATG | 6 cut(s) | 143, 218, 272, 445, 1247, 1304 |
| HspAI | GCGC | 1 cut(s) | 1266 |
| Kpn2I | TCCGGA | 1 cut(s) | 825 |
| KpnI | GGTACC | 1 cut(s) | 1134 |
| Kzo9I | GATC | 2 cut(s) | 678, 961 |
| LmnI | GCTCC | 2 cut(s) | 553, 574 |
| Lsp1109I | GCAGC | 4 cut(s) | 248, 463, 925, 1080 |
| LweI | GCATC | 2 cut(s) | 164, 1030 |
| MaeI | CTAG | 6 cut(s) | 626, 671, 675, 723, 986, 1116 |
| MaeIII | GTNAC | 6 cut(s) | 275, 648, 692, 815, 895, 1274 |
| MalI | GATC | 2 cut(s) | 680, 963 |
| MboI | GATC | 2 cut(s) | 678, 961 |
| MboII | GAAGA | 3 cut(s) | 77, 446, 1197 |
| MflI | RGATCY | 1 cut(s) | 678 |
| MhlI | GDGCHC | 1 cut(s) | 1349 |
| MluCI | AATT | 9 cut(s) | 172, 255, 500, 534, 613, 911, 915, 976, 1087 |
| MlyI | GAGTC | 2 cut(s) | 892, 1298 |
| MmeI | TCCRAC | 2 cut(s) | 861, 911 |
| MroI | TCCGGA | 1 cut(s) | 825 |
| MseI | TTAA | 7 cut(s) | 21, 126, 171, 914, 1086, 1179, 1326 |
| MslI | CAYNNNNRTG | 2 cut(s) | 144, 1038 |
| MspCI | CTTAAG | 1 cut(s) | 20 |
| MspI | CCGG | 4 cut(s) | 732, 826, 1169, 1342 |
| MspR9I | CCNGG | 2 cut(s) | 1170, 1350 |
| Mva1269I | GAATGC | 1 cut(s) | 940 |
| MvaI | CCWGG | 1 cut(s) | 1350 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 574, 626, 1030 |
| NciI | CCSGG | 1 cut(s) | 1170 |
| NdeII | GATC | 2 cut(s) | 678, 961 |
| NheI | GCTAGC | 1 cut(s) | 670 |
| NlaIII | CATG | 6 cut(s) | 143, 218, 272, 445, 1247, 1304 |
| NlaIV | GGNNCC | 2 cut(s) | 1132, 1346 |
| NmuCI | GTSAC | 1 cut(s) | 895 |
| NspI | RCATGY | 2 cut(s) | 1247, 1304 |
| PagI | TCATGA | 1 cut(s) | 139 |
| PaqCI | CACCTGC | 1 cut(s) | 793 |
| PasI | CCCWGGG | 1 cut(s) | 1349 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1385 |
| PctI | GAATGC | 1 cut(s) | 940 |
| PfeI | GAWTC | 3 cut(s) | 468, 923, 1124 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 504 |
| PkrI | GCNGC | 5 cut(s) | 238, 478, 940, 1095, 1159 |
| PleI | GAGTC | 2 cut(s) | 892, 1297 |
| PpsI | GAGTC | 2 cut(s) | 892, 1297 |
| PshAI | GACNNNNGTC | 1 cut(s) | 902 |
| PshBI | ATTAAT | 1 cut(s) | 914 |
| Psp6I | CCWGG | 1 cut(s) | 1348 |
| PspFI | CCCAGC | 3 cut(s) | 389, 1227, 1354 |
| PspGI | CCWGG | 1 cut(s) | 1348 |
| PspN4I | GGNNCC | 2 cut(s) | 1132, 1346 |
| PspPI | GGNCC | 3 cut(s) | 567, 834, 1155 |
| PsuI | RGATCY | 1 cut(s) | 678 |
| RsaI | GTAC | 1 cut(s) | 1132 |
| RsaNI | GTAC | 1 cut(s) | 1131 |
| RseI | CAYNNNNRTG | 2 cut(s) | 144, 1038 |
| SaqAI | TTAA | 7 cut(s) | 21, 126, 171, 914, 1086, 1179, 1326 |
| SatI | GCNGC | 5 cut(s) | 237, 477, 939, 1094, 1158 |
| Sau3AI | GATC | 2 cut(s) | 678, 961 |
| Sau96I | GGNCC | 3 cut(s) | 567, 834, 1155 |
| SchI | GAGTC | 2 cut(s) | 892, 1298 |
| ScrFI | CCNGG | 2 cut(s) | 1170, 1350 |
| SduI | GDGCHC | 1 cut(s) | 1349 |
| SfaNI | GCATC | 2 cut(s) | 164, 1030 |
| SinI | GGWCC | 1 cut(s) | 834 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 144, 1038 |
| SmlI | CTYRAG | 3 cut(s) | 20, 420, 997 |
| SmoI | CTYRAG | 3 cut(s) | 20, 420, 997 |
| Sse9I | AATT | 9 cut(s) | 172, 255, 500, 534, 613, 911, 915, 976, 1087 |
| SsiI | CCGC | 3 cut(s) | 1158, 1256, 1283 |
| SspI | AATATT | 2 cut(s) | 889, 955 |
| SspMI | CTAG | 6 cut(s) | 626, 671, 675, 723, 986, 1116 |
| StyD4I | CCNGG | 2 cut(s) | 1168, 1348 |
| StyI | CCWWGG | 2 cut(s) | 570, 842 |
| TaaI | ACNGT | 4 cut(s) | 69, 83, 228, 1149 |
| TaqI | TCGA | 1 cut(s) | 1309 |
| TasI | AATT | 9 cut(s) | 172, 255, 500, 534, 613, 911, 915, 976, 1087 |
| TauI | GCSGC | 1 cut(s) | 1160 |
| TfiI | GAWTC | 3 cut(s) | 468, 923, 1124 |
| Tru1I | TTAA | 7 cut(s) | 21, 126, 171, 914, 1086, 1179, 1326 |
| Tru9I | TTAA | 7 cut(s) | 21, 126, 171, 914, 1086, 1179, 1326 |
| TscAI | CASTG | 4 cut(s) | 193, 432, 913, 1126 |
| TseFI | GTSAC | 1 cut(s) | 895 |
| TseI | GCWGC | 4 cut(s) | 236, 476, 938, 1093 |
| Tsp45I | GTSAC | 1 cut(s) | 895 |
| TspDTI | ATGAA | 3 cut(s) | 128, 285, 527 |
| TspGWI | ACGGA | 1 cut(s) | 785 |
| TspRI | CASTG | 4 cut(s) | 193, 432, 913, 1126 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 504 |
| Vha464I | CTTAAG | 1 cut(s) | 20 |
| VpaK11BI | GGWCC | 1 cut(s) | 834 |
| VspI | ATTAAT | 1 cut(s) | 914 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 20 |
| XapI | RAATTY | 3 cut(s) | 500, 534, 976 |
| XceI | RCATGY | 2 cut(s) | 1247, 1304 |
| XspI | CTAG | 6 cut(s) | 626, 671, 675, 723, 986, 1116 |