ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 203 |
| AclWI | GGATC | 3 cut(s) | 278, 573, 586 |
| AcsI | RAATTY | 3 cut(s) | 46, 400, 525 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 237 |
| AflIII | ACRYGT | 2 cut(s) | 256, 275 |
| AgsI | TTSAA | 3 cut(s) | 158, 268, 530 |
| AjiI | CACGTC | 1 cut(s) | 276 |
| AjnI | CCWGG | 1 cut(s) | 354 |
| AluBI | AGCT | 5 cut(s) | 70, 128, 143, 455, 650 |
| AluI | AGCT | 5 cut(s) | 70, 128, 143, 455, 650 |
| AlwI | GGATC | 3 cut(s) | 278, 573, 586 |
| AoxI | GGCC | 3 cut(s) | 19, 432, 661 |
| ApeKI | GCWGC | 1 cut(s) | 83 |
| ApoI | RAATTY | 3 cut(s) | 46, 400, 525 |
| AspLEI | GCGC | 1 cut(s) | 659 |
| AspS9I | GGNCC | 2 cut(s) | 20, 662 |
| AsuHPI | GGTGA | 1 cut(s) | 209 |
| BamHI | GGATCC | 1 cut(s) | 578 |
| BanII | GRGCYC | 1 cut(s) | 544 |
| BauI | CACGAG | 1 cut(s) | 405 |
| BbvI | GCAGC | 1 cut(s) | 95 |
| BccI | CCATC | 1 cut(s) | 569 |
| BciT130I | CCWGG | 1 cut(s) | 356 |
| BfaI | CTAG | 3 cut(s) | 140, 513, 597 |
| BisI | GCNGC | 1 cut(s) | 84 |
| BlsI | GCNGC | 1 cut(s) | 85 |
| Bme1390I | CCNGG | 1 cut(s) | 356 |
| BmgBI | CACGTC | 1 cut(s) | 276 |
| BmgT120I | GGNCC | 2 cut(s) | 20, 662 |
| BmiI | GGNNCC | 3 cut(s) | 75, 543, 580 |
| BmrFI | CCNGG | 1 cut(s) | 356 |
| BmrI | ACTGGG | 1 cut(s) | 51 |
| BmsI | GCATC | 1 cut(s) | 160 |
| BmuI | ACTGGG | 1 cut(s) | 51 |
| BsaAI | YACGTR | 1 cut(s) | 470 |
| BsaJI | CCNNGG | 1 cut(s) | 355 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 94, 124 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 237 |
| Bse1I | ACTGG | 2 cut(s) | 46, 633 |
| Bse3DI | GCAATG | 1 cut(s) | 648 |
| BseBI | CCWGG | 1 cut(s) | 356 |
| BseDI | CCNNGG | 1 cut(s) | 355 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 237 |
| BseMI | GCAATG | 1 cut(s) | 648 |
| BseNI | ACTGG | 2 cut(s) | 46, 633 |
| BseXI | GCAGC | 1 cut(s) | 95 |
| BseYI | CCCAGC | 1 cut(s) | 650 |
| BshFI | GGCC | 3 cut(s) | 21, 434, 663 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 237 |
| BsnI | GGCC | 3 cut(s) | 21, 434, 663 |
| Bsp1286I | GDGCHC | 1 cut(s) | 544 |
| Bsp143I | GATC | 3 cut(s) | 261, 283, 578 |
| BspANI | GGCC | 3 cut(s) | 21, 434, 663 |
| BspLI | GGNNCC | 3 cut(s) | 75, 543, 580 |
| BspPI | GGATC | 3 cut(s) | 278, 573, 586 |
| BsrDI | GCAATG | 1 cut(s) | 648 |
| BsrI | ACTGG | 2 cut(s) | 46, 633 |
| BssECI | CCNNGG | 1 cut(s) | 355 |
| BssMI | GATC | 3 cut(s) | 261, 283, 578 |
| BssSI | CACGAG | 1 cut(s) | 405 |
| Bst2BI | CACGAG | 1 cut(s) | 405 |
| Bst2UI | CCWGG | 1 cut(s) | 356 |
| Bst6I | CTCTTC | 1 cut(s) | 263 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 247 |
| BstBAI | YACGTR | 1 cut(s) | 470 |
| BstC8I | GCNNGC | 1 cut(s) | 661 |
| BstDEI | CTNAG | 1 cut(s) | 503 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 235 |
| BstHHI | GCGC | 1 cut(s) | 659 |
| BstKTI | GATC | 3 cut(s) | 264, 286, 581 |
| BstMBI | GATC | 3 cut(s) | 261, 283, 578 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 247, 539, 548, 647, 656 |
| BstNI | CCWGG | 1 cut(s) | 356 |
| BstNSI | RCATGY | 2 cut(s) | 245, 260 |
| BstSCI | CCNGG | 1 cut(s) | 354 |
| BstV1I | GCAGC | 1 cut(s) | 95 |
| BstX2I | RGATCY | 1 cut(s) | 578 |
| BstYI | RGATCY | 1 cut(s) | 578 |
| BsuRI | GGCC | 3 cut(s) | 21, 434, 663 |
| BtrI | CACGTC | 1 cut(s) | 276 |
| BtsIMutI | CAGTG | 1 cut(s) | 640 |
| Cac8I | GCNNGC | 1 cut(s) | 661 |
| CfoI | GCGC | 1 cut(s) | 659 |
| Cfr13I | GGNCC | 2 cut(s) | 20, 662 |
| CviAII | CATG | 5 cut(s) | 99, 242, 257, 315, 534 |
| DdeI | CTNAG | 1 cut(s) | 503 |
| DpnI | GATC | 3 cut(s) | 263, 285, 580 |
| DpnII | GATC | 3 cut(s) | 261, 283, 578 |
| Eam1104I | CTCTTC | 1 cut(s) | 263 |
| EarI | CTCTTC | 1 cut(s) | 263 |
| Eco24I | GRGCYC | 1 cut(s) | 544 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 235 |
| EcoO109I | RGGNCCY | 2 cut(s) | 20, 662 |
| EcoRI | GAATTC | 1 cut(s) | 525 |
| EcoRII | CCWGG | 1 cut(s) | 354 |
| EcoT38I | GRGCYC | 1 cut(s) | 544 |
| FaeI | CATG | 5 cut(s) | 102, 245, 260, 318, 537 |
| FaiI | YATR | 8 cut(s) | 100, 122, 243, 258, 316, 412, 486, 535 |
| FatI | CATG | 5 cut(s) | 98, 241, 256, 314, 533 |
| FblI | GTMKAC | 1 cut(s) | 203 |
| Fnu4HI | GCNGC | 1 cut(s) | 84 |
| FriOI | GRGCYC | 1 cut(s) | 544 |
| Fsp4HI | GCNGC | 1 cut(s) | 84 |
| FspBI | CTAG | 3 cut(s) | 140, 513, 597 |
| GlaI | GCGC | 1 cut(s) | 658 |
| GluI | GCNGC | 1 cut(s) | 84 |
| GsaI | CCCAGC | 1 cut(s) | 654 |
| HaeIII | GGCC | 3 cut(s) | 21, 434, 663 |
| HhaI | GCGC | 1 cut(s) | 659 |
| Hin1II | CATG | 5 cut(s) | 102, 245, 260, 318, 537 |
| Hin6I | GCGC | 1 cut(s) | 657 |
| HinP1I | GCGC | 1 cut(s) | 657 |
| HincII | GTYRAC | 1 cut(s) | 312 |
| HindII | GTYRAC | 1 cut(s) | 312 |
| HinfI | GANTC | 3 cut(s) | 200, 458, 629 |
| HphI | GGTGA | 1 cut(s) | 209 |
| Hpy166II | GTNNAC | 2 cut(s) | 204, 312 |
| Hpy188III | TCNNGA | 5 cut(s) | 113, 131, 221, 265, 405 |
| Hpy8I | GTNNAC | 2 cut(s) | 204, 312 |
| HpyAV | CCTTC | 3 cut(s) | 11, 385, 410 |
| HpyCH4IV | ACGT | 3 cut(s) | 275, 338, 469 |
| HpyCH4V | TGCA | 4 cut(s) | 83, 98, 250, 641 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 247, 539, 548, 647, 656 |
| HpyF3I | CTNAG | 1 cut(s) | 503 |
| HpySE526I | ACGT | 3 cut(s) | 275, 338, 469 |
| Hsp92II | CATG | 5 cut(s) | 102, 245, 260, 318, 537 |
| HspAI | GCGC | 1 cut(s) | 657 |
| Kzo9I | GATC | 3 cut(s) | 261, 283, 578 |
| LmnI | GCTCC | 1 cut(s) | 547 |
| Lsp1109I | GCAGC | 1 cut(s) | 95 |
| LweI | GCATC | 1 cut(s) | 160 |
| MaeI | CTAG | 3 cut(s) | 140, 513, 597 |
| MaeII | ACGT | 3 cut(s) | 275, 338, 469 |
| MaeIII | GTNAC | 3 cut(s) | 37, 110, 302 |
| MalI | GATC | 3 cut(s) | 263, 285, 580 |
| MboI | GATC | 3 cut(s) | 261, 283, 578 |
| MboII | GAAGA | 5 cut(s) | 146, 280, 440, 531, 534 |
| MflI | RGATCY | 1 cut(s) | 578 |
| MhlI | GDGCHC | 1 cut(s) | 544 |
| MluCI | AATT | 3 cut(s) | 46, 400, 525 |
| MlyI | GAGTC | 1 cut(s) | 209 |
| MnlI | CCTC | 5 cut(s) | 96, 182, 231, 264, 327 |
| MseI | TTAA | 1 cut(s) | 560 |
| MslI | CAYNNNNRTG | 2 cut(s) | 255, 409 |
| MspR9I | CCNGG | 1 cut(s) | 356 |
| MvaI | CCWGG | 1 cut(s) | 356 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 247, 539, 548, 647, 656 |
| NdeII | GATC | 3 cut(s) | 261, 283, 578 |
| NlaIII | CATG | 5 cut(s) | 102, 245, 260, 318, 537 |
| NlaIV | GGNNCC | 3 cut(s) | 75, 543, 580 |
| NmuCI | GTSAC | 3 cut(s) | 37, 110, 302 |
| NspI | RCATGY | 2 cut(s) | 245, 260 |
| PciI | ACATGT | 1 cut(s) | 256 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 475 |
| PfeI | GAWTC | 2 cut(s) | 458, 629 |
| PkrI | GCNGC | 1 cut(s) | 85 |
| PleI | GAGTC | 1 cut(s) | 208 |
| PpsI | GAGTC | 1 cut(s) | 208 |
| Ppu21I | YACGTR | 1 cut(s) | 470 |
| PscI | ACATGT | 1 cut(s) | 256 |
| Psp6I | CCWGG | 1 cut(s) | 354 |
| PspFI | CCCAGC | 1 cut(s) | 650 |
| PspGI | CCWGG | 1 cut(s) | 354 |
| PspN4I | GGNNCC | 3 cut(s) | 75, 543, 580 |
| PspPI | GGNCC | 2 cut(s) | 20, 662 |
| PsuI | RGATCY | 1 cut(s) | 578 |
| RseI | CAYNNNNRTG | 2 cut(s) | 255, 409 |
| SaqAI | TTAA | 1 cut(s) | 560 |
| SatI | GCNGC | 1 cut(s) | 84 |
| Sau3AI | GATC | 3 cut(s) | 261, 283, 578 |
| Sau96I | GGNCC | 2 cut(s) | 20, 662 |
| SchI | GAGTC | 1 cut(s) | 209 |
| ScrFI | CCNGG | 1 cut(s) | 356 |
| SduI | GDGCHC | 1 cut(s) | 544 |
| SfaNI | GCATC | 1 cut(s) | 160 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 255, 409 |
| Sse9I | AATT | 3 cut(s) | 46, 400, 525 |
| SspI | AATATT | 1 cut(s) | 93 |
| SspMI | CTAG | 3 cut(s) | 140, 513, 597 |
| StyD4I | CCNGG | 1 cut(s) | 354 |
| TaiI | ACGT | 3 cut(s) | 278, 341, 472 |
| TaqI | TCGA | 2 cut(s) | 220, 451 |
| TasI | AATT | 3 cut(s) | 46, 400, 525 |
| TfiI | GAWTC | 2 cut(s) | 458, 629 |
| Tru1I | TTAA | 1 cut(s) | 560 |
| Tru9I | TTAA | 1 cut(s) | 560 |
| TscAI | CASTG | 1 cut(s) | 640 |
| TseFI | GTSAC | 3 cut(s) | 37, 110, 302 |
| TseI | GCWGC | 1 cut(s) | 83 |
| Tsp45I | GTSAC | 3 cut(s) | 37, 110, 302 |
| TspDTI | ATGAA | 1 cut(s) | 473 |
| TspGWI | ACGGA | 1 cut(s) | 267 |
| TspRI | CASTG | 1 cut(s) | 640 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 235 |
| XapI | RAATTY | 3 cut(s) | 46, 400, 525 |
| XceI | RCATGY | 2 cut(s) | 245, 260 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 640 |
| XmiI | GTMKAC | 1 cut(s) | 203 |
| XspI | CTAG | 3 cut(s) | 140, 513, 597 |