zinc-binding in reverse transcriptase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Methyltransf_7 | PF03492 | 55 - 362 | 6.4e-103 | SAM dependent carboxyl methyltransferase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 528 |
| Acc36I | ACCTGC | 1 cut(s) | 363 |
| AccB1I | GGYRCC | 2 cut(s) | 68, 686 |
| AccBSI | CCGCTC | 1 cut(s) | 941 |
| AccI | GTMKAC | 2 cut(s) | 600, 809 |
| AciI | CCGC | 5 cut(s) | 497, 596, 676, 926, 939 |
| AclWI | GGATC | 1 cut(s) | 742 |
| AcsI | RAATTY | 2 cut(s) | 88, 311 |
| AcyI | GRCGYC | 1 cut(s) | 69 |
| AfaI | GTAC | 4 cut(s) | 267, 405, 492, 660 |
| AfeI | AGCGCT | 1 cut(s) | 611 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 56, 451, 477, 625 |
| AjnI | CCWGG | 1 cut(s) | 670 |
| AleI | CACNNNNGTG | 1 cut(s) | 713 |
| AluBI | AGCT | 8 cut(s) | 78, 130, 157, 186, 286, 836, 953, 1006 |
| AluI | AGCT | 8 cut(s) | 78, 130, 157, 186, 286, 836, 953, 1006 |
| Alw21I | GWGCWC | 2 cut(s) | 981, 1008 |
| Alw26I | GTCTC | 4 cut(s) | 40, 822, 863, 1049 |
| AlwI | GGATC | 1 cut(s) | 742 |
| Ama87I | CYCGRG | 1 cut(s) | 624 |
| Aor51HI | AGCGCT | 1 cut(s) | 611 |
| AoxI | GGCC | 3 cut(s) | 221, 673, 908 |
| ApeKI | GCWGC | 2 cut(s) | 5, 395 |
| ApoI | RAATTY | 2 cut(s) | 88, 311 |
| AspLEI | GCGC | 2 cut(s) | 71, 612 |
| AspS9I | GGNCC | 1 cut(s) | 221 |
| AsuC2I | CCSGG | 3 cut(s) | 408, 625, 626 |
| AsuHPI | GGTGA | 3 cut(s) | 13, 154, 727 |
| AvaI | CYCGRG | 1 cut(s) | 624 |
| AxyI | CCTNAGG | 1 cut(s) | 435 |
| BaeGI | GKGCMC | 1 cut(s) | 631 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 257, 257, 290, 290 |
| BanI | GGYRCC | 2 cut(s) | 68, 686 |
| BanII | GRGCYC | 2 cut(s) | 580, 1008 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 249, 281 |
| BbsI | GAAGAC | 1 cut(s) | 313 |
| Bbv12I | GWGCWC | 2 cut(s) | 981, 1008 |
| BbvI | GCAGC | 2 cut(s) | 17, 382 |
| BccI | CCATC | 2 cut(s) | 26, 59 |
| BceAI | ACGGC | 2 cut(s) | 245, 700 |
| BciT130I | CCWGG | 1 cut(s) | 672 |
| BclI | TGATCA | 1 cut(s) | 331 |
| BcnI | CCSGG | 3 cut(s) | 408, 625, 626 |
| BcoDI | GTCTC | 4 cut(s) | 40, 822, 863, 1049 |
| BfaI | CTAG | 1 cut(s) | 164 |
| BfmI | CTRYAG | 1 cut(s) | 237 |
| BfoI | RGCGCY | 2 cut(s) | 72, 613 |
| BfuAI | ACCTGC | 1 cut(s) | 363 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 684 |
| BglII | AGATCT | 1 cut(s) | 202 |
| BisI | GCNGC | 5 cut(s) | 6, 396, 676, 926, 939 |
| BlsI | GCNGC | 5 cut(s) | 7, 397, 677, 927, 940 |
| Bme1390I | CCNGG | 4 cut(s) | 408, 625, 626, 672 |
| BmeT110I | CYCGRG | 1 cut(s) | 624 |
| BmgT120I | GGNCC | 1 cut(s) | 221 |
| BmiI | GGNNCC | 2 cut(s) | 70, 688 |
| BmrFI | CCNGG | 4 cut(s) | 408, 625, 626, 672 |
| BpiI | GAAGAC | 1 cut(s) | 313 |
| BpuEI | CTTGAG | 1 cut(s) | 254 |
| BpuMI | CCSGG | 3 cut(s) | 408, 625, 626 |
| BsaAI | YACGTR | 1 cut(s) | 807 |
| BsaHI | GRCGYC | 1 cut(s) | 69 |
| BsaJI | CCNNGG | 2 cut(s) | 261, 624 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 802, 832 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 56, 451, 477, 625 |
| Bse118I | RCCGGY | 1 cut(s) | 398 |
| Bse1I | ACTGG | 3 cut(s) | 24, 32, 482 |
| Bse21I | CCTNAGG | 1 cut(s) | 435 |
| BseBI | CCWGG | 1 cut(s) | 672 |
| BseDI | CCNNGG | 2 cut(s) | 261, 624 |
| BseGI | GGATG | 2 cut(s) | 46, 860 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 56, 451, 477, 625 |
| BseMII | CTCAG | 3 cut(s) | 51, 389, 426 |
| BseNI | ACTGG | 3 cut(s) | 24, 32, 482 |
| BseSI | GKGCMC | 1 cut(s) | 631 |
| BseXI | GCAGC | 2 cut(s) | 17, 382 |
| BseYI | CCCAGC | 1 cut(s) | 182 |
| Bsh1285I | CGRYCG | 1 cut(s) | 424 |
| BshFI | GGCC | 3 cut(s) | 223, 675, 910 |
| BshNI | GGYRCC | 2 cut(s) | 68, 686 |
| BsiEI | CGRYCG | 1 cut(s) | 424 |
| BsiHKAI | GWGCWC | 2 cut(s) | 981, 1008 |
| BsiHKCI | CYCGRG | 1 cut(s) | 624 |
| BsiSI | CCGG | 3 cut(s) | 399, 407, 625 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 56, 451, 477, 625 |
| BsmAI | GTCTC | 4 cut(s) | 40, 822, 863, 1049 |
| BsnI | GGCC | 3 cut(s) | 223, 675, 910 |
| BsoBI | CYCGRG | 1 cut(s) | 624 |
| Bsp1286I | GDGCHC | 4 cut(s) | 580, 631, 981, 1008 |
| Bsp143I | GATC | 4 cut(s) | 202, 331, 421, 734 |
| BspACI | CCGC | 5 cut(s) | 497, 596, 676, 926, 939 |
| BspANI | GGCC | 3 cut(s) | 223, 675, 910 |
| BspCNI | CTCAG | 3 cut(s) | 50, 388, 427 |
| BspHI | TCATGA | 1 cut(s) | 580 |
| BspLI | GGNNCC | 2 cut(s) | 70, 688 |
| BspMAI | CTGCAG | 1 cut(s) | 241 |
| BspMI | ACCTGC | 1 cut(s) | 363 |
| BspPI | GGATC | 1 cut(s) | 742 |
| BspQI | GCTCTTC | 3 cut(s) | 365, 1013, 1029 |
| BspT107I | GGYRCC | 2 cut(s) | 68, 686 |
| BsrBI | CCGCTC | 1 cut(s) | 941 |
| BsrFI | RCCGGY | 1 cut(s) | 398 |
| BsrI | ACTGG | 3 cut(s) | 24, 32, 482 |
| BssAI | RCCGGY | 1 cut(s) | 398 |
| BssECI | CCNNGG | 2 cut(s) | 261, 624 |
| BssMI | GATC | 4 cut(s) | 202, 331, 421, 734 |
| BssNAI | GTATAC | 1 cut(s) | 810 |
| BssNI | GRCGYC | 1 cut(s) | 69 |
| Bst1107I | GTATAC | 1 cut(s) | 810 |
| Bst2UI | CCWGG | 1 cut(s) | 672 |
| Bst4CI | ACNGT | 2 cut(s) | 518, 1060 |
| Bst6I | CTCTTC | 5 cut(s) | 365, 466, 771, 1013, 1029 |
| BstACI | GRCGYC | 1 cut(s) | 69 |
| BstBAI | YACGTR | 1 cut(s) | 807 |
| BstC8I | GCNNGC | 3 cut(s) | 284, 955, 1041 |
| BstDEI | CTNAG | 3 cut(s) | 37, 375, 435 |
| BstDSI | CCRYGG | 1 cut(s) | 261 |
| BstEII | GGTNACC | 1 cut(s) | 715 |
| BstF5I | GGATG | 2 cut(s) | 46, 860 |
| BstH2I | RGCGCY | 2 cut(s) | 72, 613 |
| BstHHI | GCGC | 2 cut(s) | 71, 612 |
| BstKTI | GATC | 4 cut(s) | 205, 334, 424, 737 |
| BstMAI | GTCTC | 4 cut(s) | 40, 822, 863, 1049 |
| BstMBI | GATC | 4 cut(s) | 202, 331, 421, 734 |
| BstMCI | CGRYCG | 1 cut(s) | 424 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 75, 684 |
| BstNI | CCWGG | 1 cut(s) | 672 |
| BstNSI | RCATGY | 1 cut(s) | 1043 |
| BstPI | GGTNACC | 1 cut(s) | 715 |
| BstSCI | CCNGG | 4 cut(s) | 406, 623, 624, 670 |
| BstSFI | CTRYAG | 1 cut(s) | 237 |
| BstSLI | GKGCMC | 1 cut(s) | 631 |
| BstSNI | TACGTA | 1 cut(s) | 807 |
| BstV1I | GCAGC | 2 cut(s) | 17, 382 |
| BstV2I | GAAGAC | 1 cut(s) | 313 |
| BstX2I | RGATCY | 2 cut(s) | 202, 734 |
| BstYI | RGATCY | 2 cut(s) | 202, 734 |
| BstZ17I | GTATAC | 1 cut(s) | 810 |
| Bsu36I | CCTNAGG | 1 cut(s) | 435 |
| BsuRI | GGCC | 3 cut(s) | 223, 675, 910 |
| BtgI | CCRYGG | 1 cut(s) | 261 |
| BtsCI | GGATG | 2 cut(s) | 46, 860 |
| BtsI | GCAGTG | 2 cut(s) | 927, 1044 |
| BtsIMutI | CAGTG | 4 cut(s) | 31, 475, 927, 1044 |
| BveI | ACCTGC | 1 cut(s) | 363 |
| Cac8I | GCNNGC | 3 cut(s) | 284, 955, 1041 |
| CciI | TCATGA | 1 cut(s) | 580 |
| CfoI | GCGC | 2 cut(s) | 71, 612 |
| Cfr10I | RCCGGY | 1 cut(s) | 398 |
| Cfr13I | GGNCC | 1 cut(s) | 221 |
| Cfr9I | CCCGGG | 1 cut(s) | 624 |
| Csp6I | GTAC | 4 cut(s) | 266, 404, 491, 659 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1033, 1068 |
| CviAII | CATG | 5 cut(s) | 581, 604, 655, 745, 1040 |
| CviQI | GTAC | 4 cut(s) | 266, 404, 491, 659 |
| DdeI | CTNAG | 3 cut(s) | 37, 375, 435 |
| DinI | GGCGCC | 1 cut(s) | 70 |
| DpnI | GATC | 4 cut(s) | 204, 333, 423, 736 |
| DpnII | GATC | 4 cut(s) | 202, 331, 421, 734 |
| Eam1104I | CTCTTC | 5 cut(s) | 365, 466, 771, 1013, 1029 |
| EarI | CTCTTC | 5 cut(s) | 365, 466, 771, 1013, 1029 |
| Ecl136II | GAGCTC | 1 cut(s) | 1006 |
| Eco105I | TACGTA | 1 cut(s) | 807 |
| Eco147I | AGGCCT | 1 cut(s) | 910 |
| Eco24I | GRGCYC | 2 cut(s) | 580, 1008 |
| Eco47III | AGCGCT | 1 cut(s) | 611 |
| Eco53kI | GAGCTC | 1 cut(s) | 1006 |
| Eco81I | CCTNAGG | 1 cut(s) | 435 |
| Eco88I | CYCGRG | 1 cut(s) | 624 |
| Eco91I | GGTNACC | 1 cut(s) | 715 |
| EcoICRI | GAGCTC | 1 cut(s) | 1006 |
| EcoO65I | GGTNACC | 1 cut(s) | 715 |
| EcoRII | CCWGG | 1 cut(s) | 670 |
| EcoT38I | GRGCYC | 2 cut(s) | 580, 1008 |
| EgeI | GGCGCC | 1 cut(s) | 70 |
| EheI | GGCGCC | 1 cut(s) | 70 |
| FaeI | CATG | 5 cut(s) | 584, 607, 658, 748, 1043 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 704, 736, 965, 997 |
| FatI | CATG | 5 cut(s) | 580, 603, 654, 744, 1039 |
| FauNDI | CATATG | 1 cut(s) | 945 |
| FbaI | TGATCA | 1 cut(s) | 331 |
| FblI | GTMKAC | 2 cut(s) | 600, 809 |
| Fnu4HI | GCNGC | 5 cut(s) | 6, 396, 676, 926, 939 |
| FokI | GGATG | 2 cut(s) | 33, 867 |
| FriOI | GRGCYC | 2 cut(s) | 580, 1008 |
| Fsp4HI | GCNGC | 5 cut(s) | 6, 396, 676, 926, 939 |
| FspBI | CTAG | 1 cut(s) | 164 |
| GlaI | GCGC | 2 cut(s) | 70, 611 |
| GluI | GCNGC | 5 cut(s) | 6, 396, 676, 926, 939 |
| GsaI | CCCAGC | 1 cut(s) | 186 |
| HaeII | RGCGCY | 2 cut(s) | 72, 613 |
| HaeIII | GGCC | 3 cut(s) | 223, 675, 910 |
| HapII | CCGG | 3 cut(s) | 399, 407, 625 |
| HhaI | GCGC | 2 cut(s) | 71, 612 |
| Hin1I | GRCGYC | 1 cut(s) | 69 |
| Hin1II | CATG | 5 cut(s) | 584, 607, 658, 748, 1043 |
| Hin6I | GCGC | 2 cut(s) | 69, 610 |
| HinP1I | GCGC | 2 cut(s) | 69, 610 |
| HindIII | AAGCTT | 1 cut(s) | 155 |
| HinfI | GANTC | 3 cut(s) | 540, 651, 788 |
| HpaII | CCGG | 3 cut(s) | 399, 407, 625 |
| HphI | GGTGA | 3 cut(s) | 13, 154, 727 |
| Hpy166II | GTNNAC | 5 cut(s) | 29, 404, 457, 601, 810 |
| Hpy188I | TCNGA | 3 cut(s) | 40, 202, 378 |
| Hpy188III | TCNNGA | 3 cut(s) | 100, 434, 581 |
| Hpy8I | GTNNAC | 5 cut(s) | 29, 404, 457, 601, 810 |
| HpyAV | CCTTC | 3 cut(s) | 455, 482, 956 |
| HpyCH4III | ACNGT | 2 cut(s) | 518, 1060 |
| HpyCH4IV | ACGT | 1 cut(s) | 806 |
| HpyCH4V | TGCA | 3 cut(s) | 149, 239, 724 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 75, 684 |
| HpyF3I | CTNAG | 3 cut(s) | 37, 375, 435 |
| HpySE526I | ACGT | 1 cut(s) | 806 |
| Hsp92I | GRCGYC | 1 cut(s) | 69 |
| Hsp92II | CATG | 5 cut(s) | 584, 607, 658, 748, 1043 |
| HspAI | GCGC | 2 cut(s) | 69, 610 |
| KasI | GGCGCC | 1 cut(s) | 68 |
| Ksp22I | TGATCA | 1 cut(s) | 331 |
| Kzo9I | GATC | 4 cut(s) | 202, 331, 421, 734 |
| LguI | GCTCTTC | 3 cut(s) | 365, 1013, 1029 |
| LmnI | GCTCC | 3 cut(s) | 191, 607, 976 |
| Lsp1109I | GCAGC | 2 cut(s) | 17, 382 |
| MaeI | CTAG | 1 cut(s) | 164 |
| MaeII | ACGT | 1 cut(s) | 806 |
| MaeIII | GTNAC | 3 cut(s) | 715, 882, 1060 |
| MalI | GATC | 4 cut(s) | 204, 333, 423, 736 |
| MbiI | CCGCTC | 1 cut(s) | 941 |
| MboI | GATC | 4 cut(s) | 202, 331, 421, 734 |
| MboII | GAAGA | 9 cut(s) | 23, 313, 316, 352, 453, 788, 1000, 1001, 1046 |
| MflI | RGATCY | 2 cut(s) | 202, 734 |
| MhlI | GDGCHC | 4 cut(s) | 580, 631, 981, 1008 |
| MluCI | AATT | 3 cut(s) | 88, 252, 311 |
| Mly113I | GGCGCC | 1 cut(s) | 69 |
| MlyI | GAGTC | 1 cut(s) | 645 |
| MmeI | TCCRAC | 1 cut(s) | 486 |
| MnlI | CCTC | 9 cut(s) | 349, 380, 384, 430, 493, 628, 641, 752, 897 |
| MseI | TTAA | 2 cut(s) | 795, 1080 |
| MslI | CAYNNNNRTG | 1 cut(s) | 713 |
| MspA1I | CMGCKG | 1 cut(s) | 497 |
| MspI | CCGG | 3 cut(s) | 399, 407, 625 |
| MspR9I | CCNGG | 4 cut(s) | 408, 625, 626, 672 |
| MvaI | CCWGG | 1 cut(s) | 672 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 75, 684 |
| NarI | GGCGCC | 1 cut(s) | 69 |
| NciI | CCSGG | 3 cut(s) | 408, 625, 626 |
| NdeI | CATATG | 1 cut(s) | 945 |
| NdeII | GATC | 4 cut(s) | 202, 331, 421, 734 |
| NlaIII | CATG | 5 cut(s) | 584, 607, 658, 748, 1043 |
| NlaIV | GGNNCC | 2 cut(s) | 70, 688 |
| NmuCI | GTSAC | 1 cut(s) | 715 |
| NspI | RCATGY | 1 cut(s) | 1043 |
| OliI | CACNNNNGTG | 1 cut(s) | 713 |
| PaeI | GCATGC | 1 cut(s) | 1043 |
| PagI | TCATGA | 1 cut(s) | 580 |
| PceI | AGGCCT | 1 cut(s) | 910 |
| PciSI | GCTCTTC | 3 cut(s) | 365, 1013, 1029 |
| PfeI | GAWTC | 2 cut(s) | 540, 788 |
| PkrI | GCNGC | 5 cut(s) | 7, 397, 677, 927, 940 |
| Ple19I | CGATCG | 1 cut(s) | 424 |
| PleI | GAGTC | 1 cut(s) | 645 |
| PluTI | GGCGCC | 1 cut(s) | 72 |
| PpsI | GAGTC | 1 cut(s) | 645 |
| Ppu21I | YACGTR | 1 cut(s) | 807 |
| PsiI | TTATAA | 1 cut(s) | 528 |
| Psp124BI | GAGCTC | 1 cut(s) | 1008 |
| Psp6I | CCWGG | 1 cut(s) | 670 |
| PspEI | GGTNACC | 1 cut(s) | 715 |
| PspFI | CCCAGC | 1 cut(s) | 182 |
| PspGI | CCWGG | 1 cut(s) | 670 |
| PspN4I | GGNNCC | 2 cut(s) | 70, 688 |
| PspPI | GGNCC | 1 cut(s) | 221 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 371, 403 |
| PstI | CTGCAG | 1 cut(s) | 241 |
| PsuI | RGATCY | 2 cut(s) | 202, 734 |
| PvuI | CGATCG | 1 cut(s) | 424 |
| RsaI | GTAC | 4 cut(s) | 267, 405, 492, 660 |
| RsaNI | GTAC | 4 cut(s) | 266, 404, 491, 659 |
| RseI | CAYNNNNRTG | 1 cut(s) | 713 |
| SacI | GAGCTC | 1 cut(s) | 1008 |
| SapI | GCTCTTC | 3 cut(s) | 365, 1013, 1029 |
| SaqAI | TTAA | 2 cut(s) | 795, 1080 |
| SatI | GCNGC | 5 cut(s) | 6, 396, 676, 926, 939 |
| Sau3AI | GATC | 4 cut(s) | 202, 331, 421, 734 |
| Sau96I | GGNCC | 1 cut(s) | 221 |
| SchI | GAGTC | 1 cut(s) | 645 |
| ScrFI | CCNGG | 4 cut(s) | 408, 625, 626, 672 |
| SduI | GDGCHC | 4 cut(s) | 580, 631, 981, 1008 |
| SfcI | CTRYAG | 1 cut(s) | 237 |
| SfoI | GGCGCC | 1 cut(s) | 70 |
| SmaI | CCCGGG | 1 cut(s) | 626 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 713 |
| SmlI | CTYRAG | 1 cut(s) | 269 |
| SmoI | CTYRAG | 1 cut(s) | 269 |
| SnaBI | TACGTA | 1 cut(s) | 807 |
| SphI | GCATGC | 1 cut(s) | 1043 |
| Sse9I | AATT | 3 cut(s) | 88, 252, 311 |
| SseBI | AGGCCT | 1 cut(s) | 910 |
| SsiI | CCGC | 5 cut(s) | 497, 596, 676, 926, 939 |
| SspDI | GGCGCC | 1 cut(s) | 68 |
| SspI | AATATT | 1 cut(s) | 996 |
| SspMI | CTAG | 1 cut(s) | 164 |
| SstI | GAGCTC | 1 cut(s) | 1008 |
| StuI | AGGCCT | 1 cut(s) | 910 |
| StyD4I | CCNGG | 4 cut(s) | 406, 623, 624, 670 |
| TaaI | ACNGT | 2 cut(s) | 518, 1060 |
| TaiI | ACGT | 1 cut(s) | 809 |
| TaqI | TCGA | 1 cut(s) | 1011 |
| TasI | AATT | 3 cut(s) | 88, 252, 311 |
| TauI | GCSGC | 3 cut(s) | 678, 928, 941 |
| TfiI | GAWTC | 2 cut(s) | 540, 788 |
| Tru1I | TTAA | 2 cut(s) | 795, 1080 |
| Tru9I | TTAA | 2 cut(s) | 795, 1080 |
| TscAI | CASTG | 4 cut(s) | 31, 482, 927, 1051 |
| TseFI | GTSAC | 1 cut(s) | 715 |
| TseI | GCWGC | 2 cut(s) | 5, 395 |
| Tsp45I | GTSAC | 1 cut(s) | 715 |
| TspDTI | ATGAA | 3 cut(s) | 68, 579, 597 |
| TspGWI | ACGGA | 1 cut(s) | 974 |
| TspMI | CCCGGG | 1 cut(s) | 624 |
| TspRI | CASTG | 4 cut(s) | 31, 482, 927, 1051 |
| XapI | RAATTY | 2 cut(s) | 88, 311 |
| XceI | RCATGY | 1 cut(s) | 1043 |
| XmaI | CCCGGG | 1 cut(s) | 624 |
| XmiI | GTMKAC | 2 cut(s) | 600, 809 |
| XspI | CTAG | 1 cut(s) | 164 |